Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	SPDYE3	Gene	0	78.63	50.30	97.87	102.81	75.05	61.22	76.34	91.12	60.98	85.58	22.63	33.03	56.69	28.21	53.28	57.20	36.28	89.21	77.24	79.14	19.87	12.57	32.34
2	332397	Transcript	0	5.86	6.94	15.79	24.88	10.58	3.90	8.36	19.81	13.28	18.64	1.10	4.20	10.72	1.87	7.30	8.41	4.07	14.84	15.71	12.47	2.32	0.85	4.09
3	437326	Transcript	0	376.23	179.92	291.31	284.09	273.62	169.41	245.45	289.33	196.35	267.11	56.32	71.24	119.76	63.13	164.96	164.38	106.43	333.81	304.59	263.00	48.83	23.91	85.14
4	489778	Transcript	0	37.34	34.80	122.98	116.04	99.48	51.29	77.90	109.25	58.90	92.94	23.04	23.10	27.41	35.17	66.88	74.81	36.89	128.51	71.04	104.26	37.06	25.55	82.77
5	ER1a	ExonRegion	0	8.57	7.59	30.28	35.59	24.57	11.02	12.36	29.98	20.43	24.19	1.73	1.52	3.43	2.94	9.79	11.58	5.22	23.97	28.13	15.00	4.30	0.37	5.16
6	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER2a	ExonRegion	0	10.34	7.96	44.95	59.76	14.20	4.20	5.53	62.28	30.81	59.51	5.36	2.49	6.12	4.85	19.38	24.79	9.99	51.26	54.75	43.07	5.08	2.91	6.17
8	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER3a	ExonRegion	0	3.94	9.46	19.55	25.05	7.48	2.14	7.39	25.78	16.29	25.87	1.35	4.15	3.60	3.07	9.82	8.31	5.40	19.71	22.98	17.82	3.57	0.49	8.19
10	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER4a	ExonRegion	1	14.29	17.52	32.75	64.81	23.06	8.11	9.56	35.97	37.28	38.19	0.45	4.86	9.77	4.27	24.24	26.99	13.82	32.49	34.12	25.79	8.23	0.49	15.05
12	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	Ix_SR1	SilentIntronRegion	0	20.00	13.94	0.62	2.25	4.05	4.32	5.74	3.15	1.01	3.82	1.12	0.00	3.58	2.69	4.90	5.55	0.94	2.33	11.77	4.58	1.23	0.46	1.76
14	Ix_AR2	ActiveIntronRegion	0	31.98	36.68	3.68	14.99	44.60	13.79	24.62	12.10	6.18	21.79	1.29	0.00	7.47	10.71	23.00	16.40	12.23	7.32	44.48	25.37	5.39	0.00	6.85
15	ER5a	ExonRegion	0	9.86	11.37	27.65	28.84	10.59	4.70	7.71	26.41	19.29	18.73	1.80	4.15	5.46	2.45	6.40	13.15	6.92	32.49	24.48	16.85	4.11	0.49	7.52
16	E5a_E6b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	Ix_AR1	ActiveIntronRegion	0	5.89	6.13	36.83	38.14	8.68	4.25	10.74	40.60	22.19	26.15	0.45	0.83	0.00	3.48	6.17	5.51	3.83	23.84	7.38	10.85	2.03	0.00	2.04
18	E6_Aa	NovelBoundary	0	209.07	117.54	223.32	243.26	120.37	23.57	110.27	259.83	143.95	231.47	11.48	18.91	44.32	26.90	55.38	64.85	33.66	181.52	102.69	142.02	54.06	8.94	39.61
19	ER6a	ExonRegion	1	530.00	229.60	333.67	356.85	367.30	138.43	296.81	380.60	251.49	347.18	37.04	49.27	108.74	39.30	184.10	175.55	108.21	457.70	413.37	336.33	47.12	13.79	102.40
20	E6_Ab	KnownBoundary	0	71.64	42.82	17.47	58.53	44.82	13.29	8.39	2.22	33.36	18.29	0.00	0.00	0.00	0.00	0.00	21.79	13.65	2.03	8.28	17.71	2.72	0.00	4.35
21	ER6b	ExonRegion	0	25.89	23.95	96.65	121.15	17.76	5.51	12.88	112.19	69.95	113.78	4.72	3.52	16.59	5.95	26.43	37.17	16.11	97.88	69.23	56.17	6.84	1.98	15.84
22	E6a_E7b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	E7_Aa	NovelBoundary	0	228.56	211.94	513.26	488.05	249.15	190.40	412.26	599.64	384.02	403.33	175.78	72.77	130.67	250.81	383.96	341.88	278.17	358.65	339.21	706.99	212.02	296.68	484.52
24	ER7a	ExonRegion	0	74.69	69.59	245.96	232.07	198.96	102.57	155.79	218.50	117.80	185.89	46.09	46.20	54.83	70.35	133.76	149.62	73.79	257.02	142.07	208.53	74.12	51.11	165.55
25	E7_Ab	KnownBoundary	0	10.45	12.96	41.78	39.99	29.03	2.90	23.98	37.34	22.34	33.58	0.00	0.00	0.00	2.30	0.00	8.63	9.26	25.20	23.72	18.73	3.15	3.12	3.84
26	ER7b	ExonRegion	0	91.92	50.31	108.00	80.65	118.89	65.38	99.89	87.56	67.19	63.57	49.12	46.28	42.05	77.31	120.20	85.12	72.34	101.34	103.03	165.66	95.71	42.46	95.90
27	E7_Da	NovelBoundary	1	24.30	50.06	46.24	86.14	84.21	22.26	41.87	65.35	38.77	43.14	8.58	56.57	42.85	11.65	26.95	4.10	25.71	55.17	74.92	77.08	17.85	8.14	11.10
28	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	Ix	Intron	0	3.79	5.62	16.78	15.53	9.36	6.10	7.22	9.64	8.23	11.96	0.79	0.54	1.01	1.40	4.64	7.49	3.49	18.74	15.29	11.25	2.69	0.68	4.54
31	Ix_SR1	SilentIntronRegion	0	3.80	5.64	16.84	15.58	9.39	6.12	7.24	9.67	8.25	11.99	0.79	0.54	1.01	1.41	4.65	7.52	3.50	18.80	15.34	11.29	2.70	0.68	4.55
32	ER8a	ExonRegion	0	0.00	0.00	1.08	0.00	0.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	Ix	Intron	1	7.31	12.77	33.34	40.54	22.56	12.01	14.78	27.04	14.61	22.77	3.47	1.28	8.44	3.20	14.27	12.53	8.14	26.25	21.72	18.99	3.75	0.75	5.53
35	Ix_SR1	SilentIntronRegion	0	7.86	11.27	36.75	45.60	23.29	10.67	15.19	28.42	15.61	24.92	1.93	0.99	9.70	1.13	15.27	13.18	7.50	29.13	23.31	19.70	3.78	0.69	5.53
36	ER9a	ExonRegion	0	33.62	22.94	76.74	62.42	38.28	48.71	26.83	62.27	43.36	56.59	31.92	22.09	18.53	42.06	40.34	56.57	44.83	58.27	49.84	53.85	14.72	5.67	13.50
37	E9_Da	NovelBoundary	0	30.30	19.08	11.41	17.61	7.81	35.66	10.42	25.79	8.25	6.45	12.16	11.25	20.13	10.01	4.45	40.50	22.44	21.80	32.10	9.01	0.00	0.00	8.54
38	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	E10_Aa	NovelBoundary	0	17.63	9.54	17.15	18.81	7.72	11.07	4.37	23.04	6.71	17.62	5.26	10.95	11.85	0.00	0.00	7.26	0.00	27.44	4.52	3.26	5.75	0.00	0.00
40	ER10a	ExonRegion	0	12.46	20.08	77.13	67.90	6.63	52.32	32.72	43.77	53.95	64.41	19.26	30.68	34.88	23.85	37.80	26.13	27.00	54.97	30.46	49.75	14.94	8.37	11.66
41	E10_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	E10a_E10b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	ER10b	ExonRegion	0	222.45	130.24	248.95	211.32	179.94	200.39	194.09	198.06	141.21	187.04	75.60	93.20	130.77	86.96	145.82	153.20	104.66	209.92	195.81	189.67	50.54	34.02	67.89
44	E10_Ab	KnownBoundary	0	44.16	21.71	12.48	28.77	18.68	28.34	37.85	9.57	7.58	8.06	2.32	23.86	21.26	0.00	0.00	11.45	0.00	16.21	3.86	6.39	0.00	0.00	0.00
45	ER10c	ExonRegion	0	94.26	47.39	27.67	42.20	36.41	46.56	67.11	25.31	13.39	24.02	3.22	15.52	19.81	3.77	11.98	18.06	10.13	33.98	35.85	34.60	2.73	3.12	10.04
46	E10_Db	KnownBoundary	1	242.71	214.24	232.07	301.29	273.01	143.21	455.41	305.59	170.95	202.14	67.02	245.63	272.87	87.53	95.68	162.86	96.77	226.25	184.85	297.41	117.19	69.56	171.58
47	ER10d	ExonRegion	1	69.54	46.32	30.17	56.02	38.33	22.69	58.94	37.51	28.38	38.35	3.36	21.29	59.86	3.90	8.91	15.18	14.89	22.00	21.74	28.61	2.58	1.14	6.32
48	E10_Dc	KnownBoundary	0	169.96	311.52	652.34	936.28	452.29	267.69	556.85	851.42	443.37	641.06	152.51	297.40	528.21	52.98	84.43	157.14	204.30	80.96	82.07	464.23	48.68	114.75	165.52
49	ER10e	ExonRegion	1	17.41	22.43	18.47	59.63	36.47	12.71	49.36	37.45	21.97	38.55	1.37	29.04	89.58	2.97	10.63	7.64	3.38	3.29	8.36	18.66	0.28	4.62	2.87