Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC093668.1 Gene 0 37.48 31.27 16.32 15.31 22.90 44.89 22.49 21.06 23.46 23.74 0.98 0.64 0.98 1.36 1.53 0.76 1.25 9.38 11.60 7.03 1.78 0.71 3.48 2 344427 Transcript 0 118.12 89.94 13.31 19.32 50.47 101.59 50.28 16.03 13.04 19.30 1.29 0.26 0.41 0.56 0.63 1.68 0.52 4.73 7.84 3.78 0.74 0.29 4.26 3 ER1a ExonRegion 0 4.24 1.05 0.00 0.00 0.57 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 E1_Da NovelBoundary 0 117.13 99.39 10.82 10.89 69.78 136.51 42.44 3.24 4.02 4.75 1.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 E1a_E2a KnownJunction 0 304.42 230.02 19.57 38.86 122.41 248.49 122.77 21.81 9.84 28.29 2.63 0.00 0.00 0.00 0.00 4.10 0.00 2.49 9.04 2.56 0.00 0.00 8.45 6 I1_AR3 ActiveIntronRegion 0 39.90 18.55 0.00 8.67 37.03 8.20 6.87 5.28 6.59 3.22 11.57 0.00 0.00 9.72 10.31 2.05 0.00 12.09 61.21 11.01 0.00 16.64 75.96 7 Ix_AR16 ActiveIntronRegion 0 3.60 3.11 72.33 91.84 2.27 2.18 2.70 108.59 39.42 77.87 25.31 12.82 13.69 25.56 49.21 61.64 45.45 64.95 50.36 51.36 38.59 26.92 77.38 8 Ix_SR10 SilentIntronRegion 0 20.24 4.86 0.00 0.00 4.26 2.92 5.28 0.00 0.00 0.00 1.54 5.68 0.00 0.00 0.00 2.37 2.63 0.00 0.00 3.39 0.00 0.00 4.68 9 Ix_AR14 ActiveIntronRegion 0 164.09 40.64 84.27 95.56 66.50 66.67 103.10 106.20 53.74 69.27 22.87 27.14 39.65 37.40 80.01 61.76 36.37 68.97 41.46 82.82 25.74 41.28 97.25 10 Ix_SR9 SilentIntronRegion 0 42.35 29.13 1.99 1.55 32.30 53.18 54.08 2.66 0.69 0.17 7.90 21.27 30.06 15.22 38.11 35.34 17.03 11.31 20.79 31.06 9.64 8.56 54.32 11 Ix_SR7 SilentIntronRegion 0 17.57 19.30 0.00 0.00 1.59 1.09 3.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.76 0.00 4.36 0.00 0.00 0.00 0.00 0.00 12 Ix_AR10 ActiveIntronRegion 0 7.99 20.12 49.92 52.82 30.02 16.65 16.48 50.97 24.41 43.93 7.10 10.42 7.96 8.23 14.00 17.58 8.75 27.82 8.77 30.17 10.12 16.58 26.95 13 Ix_AR9 ActiveIntronRegion 0 13.26 9.77 19.18 23.95 8.44 3.79 15.43 16.66 14.34 15.64 1.18 7.16 9.58 5.66 8.02 11.27 14.76 21.04 10.09 19.83 12.82 2.60 16.76 14 Ix_SR5 SilentIntronRegion 0 5.87 3.14 21.44 21.39 11.02 2.32 3.80 22.98 8.70 18.35 2.95 15.29 23.63 5.10 6.06 4.18 3.85 14.14 4.38 7.86 2.62 1.16 12.38 15 Ix_AR6 ActiveIntronRegion 0 2.12 2.03 0.00 19.29 0.00 0.00 0.00 22.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 16 Ix_SR4 SilentIntronRegion 0 36.15 32.19 52.73 74.27 104.60 48.72 57.62 65.27 26.08 43.70 15.48 17.49 23.83 29.66 37.70 31.98 17.56 40.86 25.92 47.27 18.43 30.41 55.76 17 Ix_SR1 SilentIntronRegion 0 0.00 4.64 0.00 0.00 4.07 0.00 2.02 1.96 2.80 1.30 11.77 0.00 5.88 0.02 0.00 0.00 0.00 0.00 4.85 0.00 0.00 6.34 11.18 18 Ix_AR1 ActiveIntronRegion 0 19.78 19.28 126.04 108.46 40.37 36.48 28.28 111.07 57.01 90.59 33.81 9.59 13.48 51.53 65.91 42.85 31.29 80.29 17.01 57.94 30.29 31.71 56.07 19 Ix Intron 0 3.89 7.48 1.02 13.88 3.96 3.01 8.47 11.53 16.19 16.67 3.09 2.58 4.58 2.54 5.97 3.68 3.30 11.27 5.09 5.44 6.34 5.41 12.09 20 Ix_SR1 SilentIntronRegion 0 3.92 7.96 1.11 15.06 4.29 3.26 9.13 12.51 17.56 18.09 3.35 2.79 4.97 2.76 6.48 4.00 3.58 12.22 5.53 5.91 6.88 5.87 13.12 21 I1_AR1 ActiveIntronRegion 0 1.69 3.81 31.25 51.35 5.22 6.44 2.55 68.03 34.94 59.67 2.91 1.25 0.00 2.53 3.08 6.09 4.71 28.20 3.67 5.27 6.69 6.70 10.08 22 I1_SR2 SilentIntronRegion 0 18.50 11.32 4.67 6.80 31.33 33.56 20.11 8.88 4.18 6.54 9.52 7.19 3.97 10.81 15.30 24.40 3.52 6.95 32.02 6.55 6.91 14.43 29.96 23 I1_SR3 SilentIntronRegion 0 7.35 8.46 22.75 33.56 25.70 13.21 19.18 22.87 10.03 14.61 3.48 4.27 1.23 2.22 2.25 5.89 4.97 11.74 6.87 4.45 5.23 6.50 3.40 24 Ix_AR1 ActiveIntronRegion 0 4.17 0.40 9.80 9.00 13.55 7.23 7.93 15.13 8.82 9.27 0.00 0.00 0.95 1.32 1.30 0.00 0.96 6.93 2.28 2.28 0.54 0.51 1.45 25 Ix Intron 0 0.00 0.00 3.69 2.28 2.40 3.71 5.65 5.79 7.44 21.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.13 4.29 0.00 0.50 0.00 0.66 26 Ix_SR1 SilentIntronRegion 0 0.00 0.00 3.73 2.30 2.43 3.74 5.70 5.84 7.51 22.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.16 4.33 0.00 0.50 0.00 0.67 27 Ix_AR2 ActiveIntronRegion 0 0.00 0.00 14.70 5.45 0.00 0.00 0.00 13.83 12.35 16.06 0.00 8.66 0.00 0.00 0.00 0.00 0.00 7.39 0.00 0.00 0.00 0.00 0.00 28 Ix Intron 0 3.26 6.63 12.27 11.38 5.97 10.27 6.54 26.37 13.79 18.82 0.50 0.31 1.10 0.46 0.77 0.51 1.23 5.78 6.56 6.63 2.20 0.60 2.02 29 Ix_SR1 SilentIntronRegion 0 3.27 6.63 12.28 11.39 5.97 10.28 6.55 26.39 13.80 18.83 0.50 0.31 1.11 0.46 0.77 0.51 1.23 5.78 6.57 6.64 2.21 0.60 2.02 30 Ix_AR2 ActiveIntronRegion 0 2.06 3.48 0.00 0.00 23.98 39.25 0.00 0.00 8.13 31.41 9.19 10.56 12.23 0.64 1.14 22.67 3.15 24.11 13.66 15.27 1.05 5.96 52.97 31 Ix_AR2 ActiveIntronRegion 0 3.31 3.91 97.08 89.66 7.40 10.15 8.28 97.59 48.26 85.73 43.95 1.59 2.82 14.12 21.70 19.30 36.94 52.56 11.49 45.30 32.06 28.32 20.84 32 Ix_SR1 SilentIntronRegion 0 4.76 1.53 0.00 0.00 30.10 17.88 13.90 1.96 0.00 1.30 10.18 0.00 0.00 42.70 23.04 6.69 0.00 0.00 16.72 3.19 9.92 17.19 8.81 33 Ix Intron 0 6.36 2.20 27.43 53.80 8.36 8.08 13.00 55.75 11.28 25.47 1.86 3.87 3.21 3.05 9.59 8.57 8.07 4.63 3.57 9.55 16.95 1.34 11.18 34 Ix_SR1 SilentIntronRegion 0 6.91 2.39 29.77 58.38 8.96 8.77 14.10 60.50 12.24 27.64 2.02 4.20 3.48 3.31 10.40 9.30 8.75 5.02 3.88 10.27 18.39 1.45 12.12 35 Ix_AR6 ActiveIntronRegion 0 2.58 4.14 44.58 55.36 9.44 11.94 6.82 80.01 49.42 70.48 6.71 6.06 4.76 8.75 12.08 6.45 7.17 28.79 16.42 9.81 9.87 8.76 18.73 36 Ix_AR5 ActiveIntronRegion 0 0.00 0.81 26.58 41.87 4.82 2.50 1.95 68.31 25.74 33.77 7.45 0.30 2.67 5.71 4.59 7.27 4.61 35.61 17.80 2.94 7.64 11.64 14.28 37 Ix_SR4 SilentIntronRegion 0 3.29 10.06 7.76 5.43 20.77 27.12 20.52 10.35 6.06 6.22 3.41 1.77 0.00 3.59 6.22 3.28 5.56 8.41 9.22 4.54 3.48 4.41 6.30 38 Ix_AR4 ActiveIntronRegion 0 3.30 4.33 15.96 27.07 9.45 15.01 8.47 35.26 22.89 27.53 3.23 2.08 2.62 7.46 11.72 12.74 6.75 33.60 15.87 9.49 5.27 9.89 16.15 39 Ix_AR3 ActiveIntronRegion 0 0.00 2.05 11.87 23.68 2.70 1.85 3.34 14.19 11.03 16.97 1.95 3.26 2.93 1.22 2.18 3.00 3.33 8.05 4.83 10.76 1.24 4.21 20.85 40 Ix_AR2 ActiveIntronRegion 0 2.59 0.36 1.89 5.18 11.68 50.01 10.64 0.76 6.43 17.52 0.00 0.62 1.35 0.70 0.83 0.00 0.00 0.96 3.16 1.09 1.92 0.32 0.00 41 Ix_AR1 ActiveIntronRegion 0 2.61 0.00 8.00 10.00 14.40 56.94 13.41 7.72 5.26 41.90 0.00 0.00 0.00 0.00 0.50 0.00 0.81 4.41 10.28 3.61 1.09 1.08 7.69 42 E2_Aa NovelBoundary 0 151.29 83.21 0.00 3.06 51.36 72.46 37.85 3.74 2.49 2.50 0.00 5.85 7.14 2.83 0.00 3.59 0.00 1.91 13.18 0.00 0.00 0.00 0.00 43 ER2a ExonRegion 0 45.71 38.76 20.36 19.11 28.43 55.92 28.06 26.27 29.28 29.62 1.22 0.79 1.22 1.69 1.90 0.95 1.56 11.70 14.48 8.77 2.22 0.88 4.34