Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAM3C Gene 0 156.43 150.30 143.65 189.48 284.10 233.12 123.76 196.39 172.45 119.48 220.21 313.51 366.91 148.19 148.79 121.39 99.73 27.67 38.87 70.51 51.31 383.47 96.32 2 455255 Transcript 0 0.00 2.98 0.00 0.68 0.00 2.02 0.13 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.29 0.30 0.00 0.00 0.00 1.06 1.27 1.56 1.47 3 412653 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 359943 Transcript 0 3.17 2.03 1.23 1.36 12.04 0.92 3.97 6.91 3.09 4.01 0.00 8.66 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 426156 Transcript 0 0.64 0.01 0.00 0.02 0.00 0.02 0.00 0.95 0.00 0.01 0.01 0.95 3.70 1.50 2.38 0.92 0.02 1.33 0.00 0.01 0.03 1.96 1.87 6 455828 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.18 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 497622 Transcript 1 8.32 6.01 3.33 8.80 16.07 5.70 9.41 10.77 3.79 5.10 19.98 52.39 116.57 18.15 3.67 12.48 9.62 2.99 0.67 3.97 0.60 19.77 1.77 8 474082 Transcript 0 42.39 17.08 16.46 16.09 62.26 28.03 26.53 29.66 13.80 22.59 74.68 64.42 106.89 33.20 17.64 33.78 16.37 5.36 7.16 11.30 3.85 28.62 5.77 9 ER1a ExonRegion 0 0.00 3.25 0.00 0.00 0.00 4.03 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.59 0.00 0.00 0.00 2.13 0.00 0.00 2.94 10 E1_Ac KnownBoundary 0 14.37 37.10 1.80 0.00 41.51 102.16 27.87 2.09 0.00 0.00 30.11 0.00 0.00 45.21 28.93 37.43 35.72 8.95 22.78 9.40 25.39 12.19 32.86 11 ER1b ExonRegion 0 7.83 16.54 0.61 3.27 16.59 43.28 13.02 3.00 2.51 4.13 16.37 0.00 0.00 21.22 10.54 20.01 13.86 9.79 9.87 5.46 12.12 9.24 17.03 12 E1_Ad KnownBoundary 0 10.15 15.59 1.80 5.79 20.29 34.18 12.59 2.42 3.47 3.28 15.85 5.25 0.00 10.36 0.00 21.11 13.37 16.58 9.32 3.26 17.61 14.57 33.63 13 E1_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER1c ExonRegion 0 18.40 34.18 2.59 10.48 39.00 95.57 34.27 6.45 10.07 12.17 40.29 0.00 0.00 45.79 22.88 51.78 32.25 15.78 33.32 7.69 45.77 27.25 70.48 15 E1_Da KnownBoundary 0 12.67 14.08 5.50 9.62 23.01 20.67 14.44 2.42 14.50 9.86 6.37 0.00 0.00 4.47 8.90 6.92 3.74 26.32 23.15 3.20 34.22 6.25 42.00 16 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER1d ExonRegion 1 25.40 36.60 3.68 10.90 52.18 102.69 38.39 6.91 12.35 14.91 44.46 0.00 0.00 32.48 21.76 57.96 36.31 16.63 41.41 6.38 66.11 29.17 93.97 18 ER1e ExonRegion 0 26.61 43.58 3.68 10.90 45.87 89.07 34.23 6.91 12.70 15.89 41.42 0.00 10.72 30.39 19.07 59.02 29.24 17.69 36.86 6.38 68.63 26.79 94.81 19 ER1f ExonRegion 1 50.27 81.55 4.67 6.13 51.61 38.32 28.72 2.53 11.28 11.61 73.17 5.62 34.86 68.63 87.58 89.65 88.24 9.85 36.48 36.06 105.10 163.42 108.87 20 E1_Db KnownBoundary 1 28.52 18.55 8.04 16.91 7.56 13.57 0.00 1.85 11.00 9.59 29.32 6.00 32.47 16.60 10.75 16.41 61.71 4.19 8.47 9.14 53.50 45.86 7.68 21 E1b_E3a KnownJunction 0 0.00 2.70 0.00 1.37 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 3.12 0.00 22 ER1g ExonRegion 1 14.29 37.16 18.50 29.85 7.43 12.84 1.16 8.04 27.48 18.81 50.30 2.27 51.82 37.72 15.23 22.59 65.85 21.57 11.15 13.94 98.18 56.88 27.68 23 E1c_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E1c_E3a KnownJunction 1 10.00 70.84 37.49 46.01 11.54 23.34 2.21 15.69 47.08 33.66 79.23 6.30 105.19 72.11 34.12 33.67 70.87 35.24 12.80 18.09 141.10 66.74 35.77 25 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.09 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER3a ExonRegion 0 103.47 298.03 92.97 115.49 79.08 88.97 41.26 128.51 159.40 104.81 278.44 131.65 222.78 173.93 132.76 155.32 240.97 92.97 111.96 116.67 239.27 311.64 244.12 28 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.18 0.00 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 29 E3a_E5a KnownJunction 0 155.66 378.09 142.34 190.55 155.60 133.33 68.32 228.21 241.98 162.35 350.67 242.03 291.05 199.19 202.11 236.35 287.80 147.33 137.70 192.33 218.57 543.94 319.34 30 ER4a ExonRegion 0 1.93 0.04 0.00 0.05 0.00 0.07 0.00 0.68 0.00 0.02 0.03 2.86 4.27 4.50 2.69 2.76 0.06 1.68 0.00 0.04 0.08 3.61 1.26 31 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 2.32 0.00 0.00 0.00 2.27 0.00 32 ER5a ExonRegion 0 17.34 59.23 80.71 87.56 52.09 97.12 45.08 89.44 112.75 70.51 110.86 45.69 96.53 112.48 103.31 111.27 83.84 47.28 50.91 63.55 69.39 253.63 144.59 33 E5a_E6a KnownJunction 0 30.60 65.19 84.27 96.32 46.60 89.32 31.44 77.63 96.01 53.40 79.70 79.83 114.60 138.27 95.56 90.15 66.85 16.25 67.67 76.83 41.14 266.55 117.12 34 E6a_E7a KnownJunction 1 39.19 146.16 15.23 48.08 27.93 25.55 0.00 41.57 26.42 17.89 34.54 117.79 232.78 81.58 88.76 51.27 11.69 8.00 67.39 34.26 2.78 175.86 108.24 35 ER6a ExonRegion 1 18.34 93.54 45.46 73.41 11.68 31.85 9.53 66.20 66.66 42.51 36.08 97.12 134.13 106.54 90.71 69.15 21.57 16.26 70.50 56.52 18.51 245.23 128.92 36 ER7a ExonRegion 0 57.78 124.54 7.13 16.16 36.43 62.97 30.47 17.22 10.89 6.34 0.88 50.65 72.16 17.45 24.29 18.48 0.00 4.19 15.81 7.10 0.29 45.64 21.62 37 E7_Da KnownBoundary 0 113.95 250.48 10.29 8.69 27.84 109.03 36.92 7.06 13.48 3.89 56.49 5.85 31.33 7.24 0.00 22.99 13.37 7.05 8.47 3.00 15.14 11.57 11.95 38 ER7b ExonRegion 0 90.70 190.07 0.00 0.00 3.72 34.57 13.69 0.00 1.24 1.15 6.18 0.00 0.23 2.06 0.00 3.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 E7b_E8b KnownJunction 0 148.10 215.95 9.61 8.66 23.94 15.84 10.02 1.89 15.91 7.60 43.80 0.00 14.12 0.00 11.25 3.50 8.42 3.52 0.00 5.11 2.53 7.35 12.46 40 I7 Intron 0 17.48 6.21 2.84 8.31 16.99 4.93 11.62 6.52 3.12 4.85 23.84 47.18 79.53 18.79 5.17 19.42 17.03 4.18 2.38 4.22 3.30 13.46 5.33 41 I7_SR1 SilentIntronRegion 0 18.85 6.13 3.06 7.86 17.34 4.34 11.97 6.10 3.05 4.05 21.57 44.46 80.49 18.51 5.19 18.44 17.23 3.87 2.21 4.01 3.28 12.53 4.85 42 I7_AR2 ActiveIntronRegion 0 7.17 6.67 1.40 13.68 13.26 8.51 9.59 11.32 4.19 11.46 46.20 72.70 80.46 23.21 4.65 29.55 17.26 6.88 4.32 7.06 3.88 22.33 9.89 43 ER8a ExonRegion 1 11.15 8.74 4.85 11.55 22.89 9.45 11.49 16.62 5.10 6.11 18.56 74.79 142.95 24.58 5.38 13.30 11.80 3.48 1.34 1.93 0.62 25.37 2.59 44 E8_Ab KnownBoundary 0 13.04 11.71 12.89 10.79 30.65 10.22 16.30 31.96 7.47 8.14 28.32 90.78 102.10 19.07 0.00 14.95 12.16 0.00 0.00 3.13 0.00 16.35 11.27 45 ER8b ExonRegion 0 152.94 148.00 7.31 7.26 17.25 8.47 7.01 15.41 4.32 7.47 26.46 62.18 77.22 12.46 7.90 12.35 22.25 0.00 0.00 3.63 0.00 10.35 4.35 46 E8a_E9a KnownJunction 0 199.81 143.72 5.56 15.65 36.33 20.61 8.13 4.35 5.58 8.11 57.54 46.52 82.62 9.83 0.00 8.37 33.85 5.64 4.80 6.52 16.06 33.00 8.02 47 ER9a ExonRegion 0 156.41 118.07 3.99 5.88 32.79 69.86 54.83 2.54 4.12 2.99 26.04 37.78 88.28 17.36 4.27 13.05 17.02 2.54 0.00 5.92 0.00 19.00 2.30 48 E9_Da KnownBoundary 0 10.74 2.57 1.12 4.59 0.00 0.00 11.35 8.58 4.28 5.96 27.38 25.96 111.36 17.66 4.45 8.46 12.90 7.75 0.00 9.01 0.00 17.76 3.59 49 E9a_E10a KnownJunction 0 158.84 118.53 18.30 22.87 122.58 157.18 106.70 6.74 16.17 4.16 77.76 19.66 45.94 22.25 10.38 31.62 33.57 0.00 8.75 8.44 5.13 18.92 15.71 50 ER9b ExonRegion 1 5.49 3.27 1.82 6.05 9.24 1.95 7.32 4.92 2.49 4.09 21.40 29.99 90.19 11.72 1.96 11.67 7.44 2.51 0.00 6.02 0.59 14.17 0.95 51 I9_AR1 ActiveIntronRegion 0 2.53 5.67 0.00 0.80 3.20 1.46 3.69 1.03 0.73 2.72 12.32 36.83 102.48 12.21 1.16 5.92 2.63 0.00 1.27 0.00 0.88 12.48 0.00 52 ER10a ExonRegion 0 148.10 73.89 3.57 5.75 115.06 275.22 117.02 1.97 4.19 2.13 4.67 20.81 44.03 3.74 2.90 3.72 15.04 1.18 0.00 4.85 0.00 3.76 2.20 53 E10_Da KnownBoundary 0 200.33 87.09 14.37 23.44 229.29 395.28 160.58 6.98 21.18 9.94 35.17 31.51 128.24 14.24 4.70 35.38 12.62 3.27 0.00 11.63 2.84 14.45 16.13 54 ER10b ExonRegion 0 147.92 86.94 2.38 9.31 214.06 305.23 139.09 9.70 7.65 5.96 5.26 24.05 52.24 1.99 1.13 20.14 3.94 22.07 0.53 6.38 0.00 6.02 5.71 55 E10_Db NovelBoundary 0 83.64 65.19 0.00 7.69 195.50 170.92 96.45 5.42 3.65 3.36 32.59 0.00 75.48 9.89 0.00 25.38 13.84 12.19 0.00 0.00 0.00 20.33 4.35 56 E10c_E11b KnownJunction 1 200.70 110.57 14.96 38.22 258.57 312.49 145.65 52.49 39.32 13.91 65.70 112.24 293.16 7.06 19.66 123.73 29.27 50.53 8.38 20.13 13.84 19.04 81.69 57 ER10c ExonRegion 1 156.30 99.80 6.22 18.03 209.53 273.24 134.13 23.40 27.55 8.82 0.89 90.25 185.80 6.00 12.05 74.76 0.00 46.19 6.13 8.02 0.00 8.65 37.05 58 I10 Intron 0 7.92 6.98 2.81 4.73 19.63 8.68 10.91 8.93 6.66 6.33 57.72 62.78 110.56 26.62 3.85 26.81 18.08 3.19 2.48 6.72 3.82 22.02 6.95 59 I10_SR1 SilentIntronRegion 0 1.61 2.49 1.72 1.46 5.03 2.21 5.07 3.21 3.30 2.13 23.54 66.53 130.25 16.03 1.27 12.06 7.76 1.30 1.28 5.02 1.37 16.22 3.47 60 I10_AR1 ActiveIntronRegion 1 2.24 2.66 0.54 1.71 5.99 9.37 10.35 4.25 5.56 6.96 67.86 76.92 152.61 36.34 2.55 33.37 24.88 2.54 2.80 8.75 3.33 22.88 10.57 61 I10_AR2 ActiveIntronRegion 1 2.25 2.25 0.00 0.30 9.94 9.04 7.08 2.05 3.68 2.19 80.34 53.59 129.71 33.28 3.28 40.99 34.73 2.53 1.88 7.50 9.14 14.31 5.66 62 I10_SR2 SilentIntronRegion 1 5.46 8.11 1.42 3.95 19.27 7.85 11.07 10.41 6.45 5.43 63.14 55.54 100.63 26.10 2.41 24.87 18.39 3.79 1.71 7.69 3.93 22.34 7.57 63 I10_AR3 ActiveIntronRegion 1 15.32 13.65 4.59 7.53 44.69 17.18 16.59 18.15 9.48 11.14 88.41 42.99 47.33 38.66 10.43 69.92 32.74 11.15 5.34 5.52 11.35 30.13 12.67 64 I10_SR3 SilentIntronRegion 1 24.35 14.52 8.36 13.38 46.77 15.47 18.57 17.69 12.55 12.33 75.06 64.23 77.19 28.07 8.41 25.24 17.34 2.78 4.08 6.38 3.61 28.05 6.00 65 E11_Aa NovelBoundary 0 20.52 15.46 9.31 14.02 112.73 31.91 37.36 23.95 11.00 25.12 33.96 85.53 108.76 31.31 0.00 25.21 3.93 4.85 8.47 8.88 0.00 26.45 8.45 66 ER11a ExonRegion 0 42.39 17.08 16.46 16.09 62.26 28.03 26.53 29.66 13.80 22.59 74.68 64.42 106.89 33.20 17.64 33.78 16.37 5.36 7.16 11.30 3.85 28.62 5.77 67 E11_Ab KnownBoundary 0 60.53 49.14 8.96 10.52 77.93 25.44 49.86 43.29 12.64 30.03 133.88 82.53 102.27 32.20 0.00 48.11 33.85 11.03 4.71 14.38 6.05 21.25 24.50 68 ER11b ExonRegion 0 91.70 67.46 81.02 103.65 150.65 233.87 108.87 119.59 128.26 79.45 275.58 386.04 378.55 204.48 186.09 252.87 113.70 49.13 47.58 70.58 56.02 286.04 151.33 69 E11a_E12a KnownJunction 0 62.38 46.31 68.68 86.04 144.65 173.99 103.74 102.44 117.27 51.57 411.58 331.61 219.14 133.50 101.74 166.28 196.35 19.03 37.74 98.05 75.18 299.06 94.16 70 ER12a ExonRegion 0 202.66 121.36 186.20 242.45 401.97 429.36 203.30 293.56 325.17 205.99 868.09 648.85 530.48 359.72 361.83 362.19 372.39 83.45 88.30 151.79 155.02 711.97 240.63 71 E12_Da KnownBoundary 0 273.53 179.05 267.91 372.05 435.06 401.30 202.62 321.57 358.30 258.73 1093.22 842.22 672.20 442.35 473.33 300.01 436.37 57.16 96.47 230.87 155.99 1007.78 229.03 72 ER12b ExonRegion 0 279.62 266.59 282.71 373.21 545.19 415.46 222.00 378.59 322.90 223.70 333.15 556.29 643.46 241.32 255.34 178.29 144.33 37.53 59.58 120.58 69.55 704.98 144.98 73 ER12c ExonRegion 0 3.17 2.03 1.23 1.36 12.04 0.92 3.97 6.91 3.09 4.01 0.00 8.66 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74 IG4_AR2 ActiveIntergenicRegion 0 9.18 16.15 13.24 34.70 29.85 24.85 17.27 36.13 30.00 18.84 14.61 25.62 13.22 7.35 7.72 5.97 7.81 2.51 4.11 4.44 0.53 24.74 3.04 75 IG4_SR2 SilentIntergenicRegion 0 10.66 29.29 9.28 22.73 14.30 7.89 5.14 19.60 14.62 9.33 2.98 10.16 3.97 1.96 5.29 3.35 0.92 0.75 0.34 2.31 0.19 8.07 2.63