Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C7orf53 Gene 0 11.39 13.26 10.75 23.14 22.30 28.40 9.89 13.81 34.45 13.02 3.63 5.19 3.39 3.73 4.10 5.27 5.50 4.69 7.60 7.68 3.30 12.09 5.02 2 439068 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 455302 Transcript 0 0.75 1.27 0.32 1.97 4.94 6.48 2.31 1.36 5.98 1.97 0.68 1.64 1.00 0.66 0.41 1.59 0.00 1.38 1.10 0.93 0.21 2.57 1.55 4 429049 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 312849 Transcript 0 17.26 13.86 15.93 37.31 28.22 35.11 11.77 21.48 49.06 19.06 6.52 6.20 4.90 5.00 8.35 6.56 7.62 6.90 10.59 9.73 2.96 17.18 4.94 6 486022 Transcript 0 10.55 13.59 6.59 20.07 20.39 36.82 12.76 18.37 31.91 11.40 3.43 7.49 1.90 4.20 1.82 4.61 2.58 1.02 10.33 4.19 2.58 14.96 6.18 7 471030 Transcript 0 8.93 20.58 4.61 10.11 13.86 14.69 6.11 3.37 18.97 4.66 2.96 2.66 5.26 2.35 6.71 10.17 2.03 4.56 5.37 4.43 2.68 7.88 8.74 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1b ExonRegion 0 0.94 1.80 0.00 0.91 0.14 6.51 5.32 1.11 2.53 0.76 0.00 0.00 0.04 0.85 0.00 0.00 4.39 0.00 0.08 0.06 1.95 0.00 0.00 10 E1_Da NovelBoundary 0 0.00 9.27 3.49 2.96 0.00 2.90 1.81 0.00 8.80 8.46 0.00 0.00 0.00 0.00 0.00 0.00 4.02 6.43 19.11 8.88 0.00 3.12 8.62 11 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER2a ExonRegion 0 1.52 7.57 2.09 4.36 6.90 10.75 9.00 2.58 17.14 4.16 0.83 2.04 3.75 0.81 0.29 1.28 5.19 3.42 3.19 9.75 5.05 6.87 3.37 14 E2_Da NovelBoundary 0 0.00 0.00 0.00 9.66 11.21 22.26 5.43 2.55 25.90 1.45 2.58 6.30 13.64 7.36 0.00 7.86 9.35 4.31 4.80 12.59 5.25 12.49 3.41 15 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 I2 Intron 0 1.82 5.95 2.86 7.79 6.96 10.85 6.15 5.01 22.48 6.08 2.00 6.09 4.74 2.56 0.90 3.90 3.75 1.91 2.41 7.03 1.78 9.04 2.89 17 I2_SR1 SilentIntronRegion 0 2.23 6.34 2.91 8.19 6.71 11.08 6.63 5.89 24.44 7.13 2.32 7.04 5.80 3.15 1.07 4.53 4.91 2.54 2.77 8.72 2.48 8.24 3.41 18 I2_AR1 ActiveIntronRegion 0 0.00 4.46 1.06 5.31 7.39 7.73 5.01 2.99 15.79 3.48 0.84 5.18 0.56 0.79 0.89 1.73 0.96 0.40 0.93 4.02 0.00 11.21 0.85 19 I2_AR2 ActiveIntronRegion 0 0.17 7.54 5.25 9.92 10.02 15.01 4.28 4.11 25.27 4.47 2.05 0.37 5.23 2.53 0.00 3.77 1.95 0.86 2.31 3.13 0.69 11.90 2.99 20 I2_SR2 SilentIntronRegion 0 5.26 3.21 4.56 7.78 4.11 12.23 6.65 1.18 14.31 3.22 1.61 5.40 3.77 0.60 0.00 3.00 0.17 0.00 2.79 0.31 0.00 8.25 2.66 21 E3_Aa NovelBoundary 0 0.00 15.33 8.40 21.54 32.00 42.93 4.46 16.27 53.15 9.27 2.11 6.30 6.82 0.00 6.30 8.63 3.83 0.00 0.00 5.94 0.00 11.94 15.62 22 ER3a ExonRegion 0 2.24 3.80 0.95 5.92 14.82 19.45 5.00 4.08 17.94 5.91 2.05 4.91 2.99 1.99 1.22 4.76 0.00 4.13 3.30 2.78 0.62 7.70 4.64 23 E3_Da NovelBoundary 0 0.00 6.38 2.99 10.92 28.95 15.67 9.85 5.63 36.23 9.78 4.84 6.30 14.12 2.47 0.00 0.00 4.58 4.23 22.12 6.14 0.00 8.45 0.00 24 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 I3 Intron 0 2.91 3.99 2.39 8.91 10.86 15.01 6.07 6.91 21.81 4.36 2.40 4.23 3.70 1.94 0.98 1.95 3.24 1.51 3.34 9.05 2.89 5.46 3.46 26 I3_SR1 SilentIntronRegion 0 2.94 4.95 2.38 8.47 11.86 16.57 7.25 7.83 25.11 4.01 2.85 4.69 4.91 1.66 1.30 2.07 4.02 1.76 3.60 10.91 2.30 4.89 3.32 27 E4_Aa NovelBoundary 0 0.00 0.00 1.12 8.02 12.65 26.58 1.94 0.00 24.57 5.16 0.00 0.00 0.00 7.42 0.00 0.00 0.00 5.14 4.71 5.69 9.08 2.88 4.35 28 ER4a ExonRegion 0 2.45 10.37 2.09 10.73 19.66 25.01 9.02 2.06 15.59 6.94 2.33 1.38 0.07 0.96 2.66 3.38 3.85 1.06 3.96 4.95 5.21 4.04 3.43 29 E4_Da NovelBoundary 0 3.19 0.00 2.93 4.69 0.00 30.38 5.56 0.00 11.52 8.54 0.00 6.30 0.00 8.89 0.00 0.00 3.65 4.27 0.00 12.02 0.00 0.00 0.00 30 E4a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 1.18 0.00 0.00 0.00 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E4a_E6b KnownJunction 0 0.00 6.45 0.00 5.39 24.79 8.63 3.84 5.09 17.19 5.75 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.86 0.00 2.53 0.00 0.00 32 I4 Intron 0 5.86 11.79 6.32 16.43 15.74 22.78 10.02 9.80 26.28 10.05 3.60 4.32 3.06 2.60 2.68 5.79 3.86 4.29 4.55 6.07 3.34 8.56 3.68 33 I4_AR1 ActiveIntronRegion 0 3.52 5.74 4.75 8.60 10.05 13.49 7.10 6.26 15.68 5.66 1.21 2.01 0.00 1.43 1.50 4.28 4.83 4.37 3.07 5.77 2.24 3.77 2.58 34 I4_SR1 SilentIntronRegion 0 7.11 15.02 7.16 20.61 18.79 27.74 11.59 11.70 31.94 12.40 4.86 5.55 4.68 3.23 3.31 6.59 3.35 4.26 5.34 6.25 3.93 11.12 4.28 35 E5_Aa NovelBoundary 0 0.00 11.77 7.84 16.71 33.28 2.10 2.25 10.56 11.78 7.33 2.68 23.86 8.28 4.77 0.00 8.46 0.00 2.24 8.09 3.07 2.97 41.64 11.87 36 ER5a ExonRegion 0 10.55 13.59 6.59 20.07 20.39 36.82 12.76 18.37 31.91 11.40 3.43 7.49 1.90 4.20 1.82 4.61 2.58 1.02 10.33 4.19 2.58 14.96 6.18 37 E5_Ab KnownBoundary 0 3.78 9.80 4.85 10.52 8.15 31.06 16.65 4.07 28.76 5.37 0.00 5.70 0.00 4.94 0.00 0.00 4.77 0.00 4.71 6.33 2.72 10.96 4.35 38 ER5b ExonRegion 0 6.96 3.68 5.99 6.21 21.15 24.44 7.18 12.13 17.36 6.46 0.00 1.75 0.81 6.25 1.17 1.20 4.19 0.00 10.96 7.00 1.57 11.30 3.16 39 E5_Da KnownBoundary 0 13.41 0.00 5.97 6.09 39.30 10.96 1.85 21.60 17.74 5.16 2.26 6.30 6.49 6.95 0.00 4.36 3.74 0.00 9.04 5.69 0.00 11.02 7.68 40 ER5c ExonRegion 0 6.35 0.17 1.05 3.86 17.81 2.31 0.15 10.27 4.98 2.23 0.00 3.83 4.42 3.20 0.00 4.25 0.85 0.00 4.00 2.74 0.00 3.33 1.76 41 E5_Db NovelBoundary 0 10.45 9.01 3.02 19.24 21.48 42.65 16.69 12.12 29.66 11.95 7.53 0.00 0.00 7.30 0.00 8.12 3.83 4.39 4.80 9.78 6.12 14.21 0.00 42 E5b_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.29 1.79 0.00 0.00 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 E6_Aa NovelBoundary 0 31.93 24.40 5.53 28.37 12.82 46.34 2.25 7.06 32.46 6.72 7.74 0.00 6.98 5.12 4.45 0.00 0.00 2.57 4.80 2.81 3.09 13.41 0.00 44 ER6a ExonRegion 0 8.93 20.58 4.61 10.11 13.86 14.69 6.11 3.37 18.97 4.66 2.96 2.66 5.26 2.35 6.71 10.17 2.03 4.56 5.37 4.43 2.68 7.88 8.74 45 E6_Ab KnownBoundary 0 11.04 30.19 4.67 24.01 49.41 19.76 6.14 4.27 28.53 15.74 2.68 0.00 0.00 5.59 6.30 16.32 0.00 4.68 8.56 5.94 0.00 6.00 11.87 46 ER6b ExonRegion 0 8.07 18.00 14.12 33.90 35.39 38.34 8.94 18.12 49.91 20.39 5.56 7.71 0.00 7.35 4.22 11.28 8.02 4.35 10.18 6.15 3.05 16.80 5.09 47 E6a_E7a KnownJunction 0 10.96 0.00 9.52 38.66 36.42 64.00 10.29 10.23 37.24 19.05 5.26 0.00 0.00 0.00 5.56 7.86 0.00 0.00 12.89 2.75 7.91 5.51 3.50 48 ER7a ExonRegion 0 29.47 26.64 27.14 41.71 44.57 51.30 10.11 20.95 58.88 23.22 3.16 4.80 6.09 5.50 4.79 9.80 9.03 7.04 8.81 11.06 2.96 14.69 6.21 49 E7_Da KnownBoundary 0 13.04 16.71 11.27 16.65 31.58 2.90 2.25 14.95 33.16 9.19 0.00 0.00 0.00 2.18 0.00 3.59 4.30 3.65 8.09 3.07 0.00 5.33 4.35 50 E7_Db KnownBoundary 0 22.89 20.72 4.55 15.62 7.30 35.49 7.38 10.88 21.87 5.29 0.00 11.55 0.00 0.00 0.00 0.00 0.00 2.49 0.00 2.81 0.00 2.76 3.67 51 ER7b ExonRegion 0 39.51 43.38 24.10 39.52 34.78 41.57 13.24 29.38 62.99 21.79 5.80 30.31 4.69 6.50 2.90 5.94 7.70 7.39 6.37 8.51 4.41 18.75 13.70 52 ER7c ExonRegion 0 26.49 37.21 25.46 39.28 32.66 36.08 15.85 23.16 52.20 22.03 2.82 12.01 5.41 5.43 1.93 6.67 9.46 7.47 11.13 12.71 6.39 15.95 7.46 53 E7_Dc KnownBoundary 0 7.41 26.84 29.36 40.32 25.30 17.60 28.48 17.83 47.77 22.48 5.32 0.00 0.00 7.06 4.45 3.93 0.00 13.93 25.98 9.01 11.31 5.76 6.91 54 ER7d ExonRegion 0 12.92 14.81 26.37 42.05 33.63 42.97 13.02 23.99 51.17 23.04 5.65 11.24 0.14 5.75 7.27 3.02 4.04 14.15 11.12 14.00 7.17 14.43 15.87 55 E7_Dd KnownBoundary 0 10.22 21.38 26.94 52.81 37.35 94.89 7.99 31.22 55.96 26.14 0.00 30.61 0.00 9.48 5.93 0.00 17.67 12.81 21.55 17.45 3.15 25.11 24.33 56 ER7e ExonRegion 0 17.26 13.86 15.93 37.31 28.22 35.11 11.77 21.48 49.06 19.06 6.52 6.20 4.90 5.00 8.35 6.56 7.62 6.90 10.59 9.73 2.96 17.18 4.94