Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CTA-313A17.2 Gene 0 0.00 0.40 1.79 4.19 2.89 0.54 0.13 5.06 0.72 1.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 2 435289 Transcript 0 0.00 0.00 0.00 0.35 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 3 433904 Transcript 0 0.00 0.84 1.75 4.15 1.78 0.46 0.00 3.96 1.09 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 4 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 Ix Intron 1 90.01 74.39 95.25 168.27 130.55 41.87 85.64 72.71 45.07 57.69 23.84 68.83 68.42 18.25 49.52 39.21 27.34 26.29 34.02 67.25 10.68 16.75 31.00 6 Ix_SR4 SilentIntronRegion 0 26.70 20.63 23.02 31.19 36.64 17.10 22.88 10.59 6.06 12.65 7.42 9.78 15.81 4.16 18.06 15.48 9.05 15.86 7.86 17.50 7.25 4.00 12.88 7 Ix_AR3 ActiveIntronRegion 0 30.69 53.89 33.70 69.51 14.72 16.50 44.35 25.93 14.20 39.57 10.63 30.31 39.87 4.87 0.00 23.78 0.00 9.24 0.00 9.57 0.00 3.13 30.83 8 Ix_AR2 ActiveIntronRegion 0 139.57 115.21 140.58 245.59 166.54 59.18 121.58 104.11 69.28 87.88 35.63 106.60 107.05 27.50 74.39 56.03 38.63 32.63 48.90 98.86 13.71 26.38 42.08 9 Ix_AR1 ActiveIntronRegion 0 14.82 14.34 15.03 50.64 186.74 28.67 58.05 21.11 8.19 5.01 7.53 14.81 10.12 2.82 6.11 3.60 16.16 6.32 8.55 24.52 8.00 6.69 12.83 10 Ix_SR1 SilentIntronRegion 0 21.73 19.44 52.90 111.20 129.92 19.98 54.42 58.44 22.08 25.04 9.15 30.01 19.02 8.61 16.02 20.30 16.30 22.29 23.37 35.46 5.92 3.50 20.90 11 Ix Intron 0 81.04 54.37 56.06 113.98 74.19 21.79 38.90 44.64 20.96 32.16 15.31 43.64 33.51 19.44 28.87 32.38 9.81 11.52 17.35 27.74 1.82 10.32 15.03 12 Ix_SR1 SilentIntronRegion 0 75.72 47.78 56.06 124.74 83.59 20.57 42.42 46.04 25.56 35.60 15.48 39.99 35.56 20.48 30.44 38.09 9.70 15.70 18.71 28.41 1.77 11.13 18.82 13 Ix_AR1 ActiveIntronRegion 0 91.16 66.16 57.01 98.20 60.00 24.19 33.76 43.09 13.76 27.04 15.30 50.42 30.69 18.03 26.79 23.47 10.13 4.84 15.41 27.11 1.94 9.14 9.01 14 E2a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER2a ExonRegion 0 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 Ix Intron 0 95.92 49.97 87.42 178.84 116.51 49.10 91.72 86.79 50.48 60.76 39.06 65.69 87.03 32.27 49.62 57.27 43.89 36.45 36.52 57.26 10.02 14.18 31.14 17 Ix_AR3 ActiveIntronRegion 0 22.66 10.31 1.54 5.72 33.17 8.27 10.07 2.90 1.04 1.44 5.99 2.01 3.26 1.77 6.92 10.05 8.37 2.07 2.69 6.59 0.62 1.17 2.48 18 Ix_SR2 SilentIntronRegion 0 42.41 16.44 34.02 70.68 71.98 24.02 49.36 31.31 18.43 19.25 13.74 34.70 41.88 16.67 25.38 27.00 16.55 16.79 19.60 18.14 3.89 5.85 19.88 19 Ix_AR2 ActiveIntronRegion 0 173.87 92.53 161.15 319.99 191.66 87.71 162.36 160.29 92.89 109.84 68.77 113.56 156.65 56.21 85.49 98.92 78.35 62.37 61.71 107.62 17.91 25.54 52.67 20 Ix_SR1 SilentIntronRegion 0 10.79 9.22 18.80 64.95 17.12 2.04 2.25 22.33 15.51 30.98 18.06 15.14 13.10 5.17 7.22 13.53 10.60 16.63 13.15 8.38 3.45 2.96 2.56 21 Ix_AR1 ActiveIntronRegion 0 33.64 32.70 57.54 141.29 79.92 31.46 57.91 59.61 31.43 49.12 34.69 53.04 49.62 28.61 48.33 51.62 40.35 31.41 26.82 43.25 8.52 11.68 20.71 22 I2_SR1 SilentIntronRegion 0 17.59 18.88 81.43 61.36 27.27 22.19 23.70 38.25 32.40 43.20 15.64 15.01 15.47 13.78 22.04 19.12 13.41 34.19 22.65 25.59 13.77 7.45 21.48 23 E3_Aa NovelBoundary 0 3.78 3.03 61.44 70.12 24.53 19.65 21.46 57.46 42.07 41.29 15.21 13.50 20.29 12.36 12.61 23.75 0.00 36.02 9.13 38.67 2.72 0.00 13.06 24 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E4_Ab NovelBoundary 0 48.23 15.98 42.28 92.50 61.04 27.26 17.27 65.51 36.89 27.75 33.43 67.67 13.31 21.66 16.56 45.97 0.00 32.17 18.17 34.26 3.03 2.69 16.30 27 ER4a ExonRegion 0 0.00 0.00 0.00 0.78 0.00 1.83 0.00 1.48 0.82 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER4b ExonRegion 0 0.00 0.62 6.99 14.36 2.09 0.65 0.00 4.47 2.03 4.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 29 E4a_E5a KnownJunction 0 0.00 3.35 7.01 15.82 7.13 0.00 0.00 14.38 3.53 4.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.13 0.00 0.00 0.00 30 E4b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER4c ExonRegion 0 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 32 E5_Aa NovelBoundary 0 0.00 0.00 0.00 6.66 0.00 0.00 0.00 63.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 ER5a ExonRegion 0 0.00 1.39 3.17 8.54 11.77 1.66 0.00 19.73 1.69 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 34 ER5b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00