Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TRIM56 Gene 0 32.59 2.05 7.84 6.46 14.85 3.61 7.23 9.93 11.31 4.67 52.16 23.13 27.47 119.71 96.38 102.06 74.95 0.95 1.98 1.87 35.40 27.57 44.30 2 306085 Transcript 0 18.98 0.21 1.54 1.65 3.19 1.47 3.04 2.31 2.21 1.04 14.24 2.45 3.49 45.56 32.52 34.45 24.33 0.10 0.12 0.06 10.80 12.67 17.74 3 412507 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 426046 Transcript 0 28.46 0.45 5.04 0.45 2.97 0.82 3.38 6.15 2.33 0.89 4.94 0.96 20.84 21.29 30.95 20.47 5.87 0.41 0.00 0.00 13.71 4.86 5.55 5 467847 Transcript 0 27.59 0.47 3.18 1.41 9.03 0.42 1.23 3.44 2.70 3.78 20.39 21.53 10.65 45.17 53.12 48.72 36.50 0.01 2.77 0.00 9.45 7.19 17.61 6 487252 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1a ExonRegion 0 21.57 0.00 0.98 1.90 5.80 4.21 3.92 1.54 1.25 0.96 20.96 2.16 3.52 78.83 53.81 61.25 47.98 0.22 0.00 0.08 18.39 24.16 38.74 8 E1_Ab KnownBoundary 1 149.51 0.00 3.22 5.23 39.56 22.71 24.95 8.30 9.72 6.34 102.45 0.00 6.82 332.98 359.60 395.62 259.65 1.66 0.00 0.00 62.77 108.20 202.82 9 ER1b ExonRegion 1 56.71 0.00 7.18 2.89 24.41 6.14 13.21 6.07 8.19 6.04 60.31 9.72 19.05 168.58 148.73 227.88 162.55 1.85 0.00 2.08 41.65 58.68 99.07 10 E1_Da NovelBoundary 0 17.78 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 10.75 11.54 9.54 0.00 0.00 0.00 8.96 5.08 4.35 11 E1a_E2b KnownJunction 1 18.00 0.00 8.63 3.43 8.15 0.00 4.37 6.16 8.48 7.55 17.32 48.02 54.22 56.21 48.71 35.03 52.36 1.99 0.00 0.00 20.26 11.08 32.95 12 I1 Intron 1 19.58 0.00 1.57 2.19 4.61 1.97 2.42 4.71 4.75 2.21 13.52 13.24 13.03 31.45 55.36 42.53 31.62 0.30 0.00 0.69 12.79 5.83 8.22 13 I1_SR1 SilentIntronRegion 1 19.66 0.00 1.58 2.19 4.63 1.98 2.43 4.73 4.77 2.22 13.58 13.29 13.09 31.58 55.60 42.71 31.75 0.30 0.00 0.69 12.85 5.85 8.25 14 E2_Aa NovelBoundary 0 32.89 0.00 0.00 7.56 16.98 0.00 0.00 4.15 2.89 2.87 24.22 38.26 33.76 80.52 115.21 126.98 45.72 0.00 0.00 0.00 8.15 18.49 46.69 15 ER2a ExonRegion 0 27.59 0.47 3.18 1.41 9.03 0.42 1.23 3.44 2.70 3.78 20.39 21.53 10.65 45.17 53.12 48.72 36.50 0.01 2.77 0.00 9.45 7.19 17.61 16 E2_Ab KnownBoundary 1 96.02 0.00 4.97 1.83 12.31 0.00 0.00 4.64 5.56 4.03 24.27 18.91 46.75 57.15 94.32 112.45 21.97 0.00 10.45 0.00 11.43 5.88 27.66 17 ER2b ExonRegion 0 33.15 0.00 11.39 9.30 18.19 5.20 1.45 12.72 20.50 8.44 105.77 44.31 57.29 190.43 151.08 186.80 142.88 2.24 3.22 0.67 69.31 46.93 82.95 18 E2_Da NovelBoundary 1 19.56 0.00 0.00 3.60 0.00 2.90 0.00 2.38 5.76 1.67 0.00 17.71 0.00 17.36 24.97 30.59 4.02 0.00 4.14 0.00 0.00 5.82 11.52 19 E2a_E3a KnownJunction 1 30.97 0.00 20.61 11.39 6.96 0.00 0.00 19.06 16.44 12.36 105.18 42.01 44.32 262.82 283.83 557.46 127.82 4.56 0.00 0.00 80.31 91.48 206.58 20 ER3a ExonRegion 0 16.62 0.00 15.82 8.21 10.91 5.87 6.51 14.22 19.94 5.86 86.84 30.31 29.90 184.03 135.73 155.76 113.69 1.64 0.82 2.18 62.39 36.63 73.16 21 E3_Da KnownBoundary 1 28.23 0.00 11.97 4.83 11.71 7.95 3.62 16.22 22.86 5.45 89.23 5.25 20.62 236.92 146.36 143.47 90.14 0.00 0.00 6.52 57.21 22.96 84.77 22 ER3b ExonRegion 0 19.56 0.67 6.79 5.65 4.00 2.81 2.64 10.14 16.20 6.22 75.32 22.01 16.79 200.20 146.72 139.73 128.09 0.55 0.54 1.56 54.60 29.57 55.77 23 E3_Db KnownBoundary 1 49.19 0.00 1.15 5.79 4.16 0.00 6.27 11.42 22.57 9.83 73.18 17.56 0.00 187.59 182.46 162.86 141.84 0.00 0.00 0.00 58.32 32.51 62.83 24 E3b_E4a KnownJunction 0 28.75 13.48 40.68 25.64 6.96 0.00 9.05 60.01 41.32 33.82 36.27 22.36 25.00 15.54 9.02 144.66 44.32 28.89 7.72 7.86 38.12 28.29 39.69 25 ER3c ExonRegion 0 14.44 0.14 4.26 3.37 5.30 1.51 3.64 7.65 7.36 3.07 32.76 7.26 8.32 90.36 71.52 70.70 49.34 0.18 0.44 0.15 24.81 18.02 29.34 26 E3_Ab KnownBoundary 0 6.67 0.00 0.00 0.00 0.00 0.00 0.00 2.14 4.43 1.48 7.42 0.00 5.68 4.47 0.00 16.06 0.00 0.00 0.00 0.00 2.72 0.00 0.00 27 ER3d ExonRegion 0 3.89 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.01 0.37 0.54 0.00 0.00 0.00 0.02 0.00 0.02 0.03 28 E3_Dc KnownBoundary 0 28.67 0.00 2.54 6.79 3.65 2.10 0.00 0.00 7.15 5.80 18.27 5.85 0.00 6.89 22.37 26.92 19.64 0.00 0.00 0.00 14.76 5.14 22.19 29 E3c_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER3e ExonRegion 0 35.67 0.70 0.01 1.32 1.68 0.16 2.61 0.06 0.23 0.13 0.35 0.36 2.13 1.28 2.56 2.89 0.00 0.00 0.06 0.01 0.00 0.70 1.42 31 E3_Ac KnownBoundary 1 53.86 6.31 0.00 5.63 8.06 2.90 11.75 6.41 4.92 4.08 2.68 6.30 28.73 27.08 46.73 55.28 7.57 0.00 0.00 0.00 3.03 11.51 12.46 32 ER3f ExonRegion 0 120.88 13.55 27.32 26.62 79.40 14.16 35.05 26.66 28.24 11.85 121.83 91.59 122.85 234.07 186.57 194.28 138.99 4.56 9.63 10.28 70.95 73.13 88.70 33 E3_Dd NovelBoundary 0 14.15 0.00 3.28 1.56 3.40 0.00 2.03 0.00 3.33 1.67 4.95 0.00 14.45 5.53 0.00 11.28 4.39 0.00 0.00 0.00 0.00 6.49 10.67 34 E3_De NovelBoundary 0 104.31 3.22 7.60 7.66 14.69 5.00 8.30 8.58 9.00 5.24 33.11 56.27 27.92 71.34 23.86 92.97 47.31 1.82 0.00 0.00 14.76 21.43 34.40 35 ER3g ExonRegion 0 4.23 0.00 0.92 0.00 0.00 0.00 1.99 0.00 0.00 0.00 2.90 0.00 0.00 11.77 2.18 2.97 0.00 0.00 0.00 0.00 0.00 7.81 1.47 36 Ix Intron 0 211.02 3.31 21.05 22.73 107.80 14.68 28.56 39.65 43.19 15.65 146.69 233.23 273.31 394.49 324.83 298.14 218.07 1.56 3.46 1.44 89.51 99.90 135.24 37 Ix_AR2 ActiveIntronRegion 0 220.70 3.46 22.02 23.77 112.75 15.35 29.87 41.47 45.17 16.37 153.42 243.93 285.85 412.59 339.74 311.82 228.08 1.63 3.62 1.51 93.62 104.49 141.44 38 E4_Aa NovelBoundary 1 1039.15 1010.15 1010.70 1199.98 722.67 517.94 1068.03 1154.80 1110.38 1034.24 467.33 486.16 731.12 572.55 942.09 1045.11 816.27 1441.13 764.92 1018.97 565.08 342.66 992.86 39 ER4a ExonRegion 0 95.46 10.43 18.70 8.16 29.89 9.37 20.68 33.59 24.09 8.39 116.40 66.25 104.41 152.73 227.03 339.12 143.51 2.82 11.39 8.77 74.97 90.10 162.14 40 ER4b ExonRegion 1 28.46 0.45 5.04 0.45 2.97 0.82 3.38 6.15 2.33 0.89 4.94 0.96 20.84 21.29 30.95 20.47 5.87 0.41 0.00 0.00 13.71 4.86 5.55