Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 POLR2J3 Gene 0 85.34 85.81 141.08 174.01 167.84 94.03 142.15 120.78 68.41 99.05 49.53 66.38 65.06 57.12 111.67 101.82 60.76 95.67 79.90 124.22 52.39 42.72 139.78 2 486319 Transcript 0 53.85 37.27 3.25 36.27 32.31 14.05 18.42 23.31 52.40 53.25 46.66 3.73 10.29 17.45 32.04 6.18 3.25 44.46 187.49 21.01 7.30 58.84 219.74 3 443430 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 340125 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 489144 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 464525 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 379340 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 379357 Transcript 0 0.25 0.56 0.00 0.74 0.00 0.42 0.31 0.02 0.01 0.05 0.01 0.00 0.00 0.30 0.47 0.25 0.00 0.63 0.00 0.00 0.00 1.56 0.00 9 ER1a ExonRegion 0 54.93 38.08 0.45 34.94 30.16 5.17 17.69 21.06 47.55 44.99 46.04 7.08 11.51 23.77 35.34 4.05 3.90 53.42 219.79 15.38 5.71 66.29 232.53 10 ER1b ExonRegion 1 112.18 69.14 1.53 62.18 60.20 15.13 37.90 41.92 87.08 84.30 79.01 8.66 19.35 38.57 64.19 8.92 6.60 83.15 373.48 32.45 11.29 110.69 421.41 11 ER1c ExonRegion 1 106.62 73.72 9.31 73.87 66.76 37.00 37.57 48.87 109.65 114.75 93.94 4.11 19.35 28.58 60.78 14.49 5.86 79.96 342.67 47.66 16.20 110.22 426.69 12 E1_Ac KnownBoundary 0 21.93 34.53 6.62 87.83 15.11 26.41 5.92 63.09 117.16 104.36 42.75 0.00 12.17 4.77 4.94 4.10 0.00 98.82 82.26 30.23 5.44 29.51 143.07 13 E1_Ad KnownBoundary 0 3.78 0.00 0.00 0.00 4.33 0.00 0.00 0.00 1.65 3.33 5.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 4.35 14 E1_Ae KnownBoundary 0 3.78 0.00 5.50 2.06 4.24 2.90 4.50 7.56 3.50 7.98 2.53 0.00 0.00 3.00 0.00 4.10 0.00 0.00 0.00 0.00 0.00 2.88 17.24 15 E1_Af KnownBoundary 0 28.52 6.45 20.99 26.80 53.99 43.10 15.28 7.15 26.16 25.41 18.11 7.35 0.00 0.00 29.54 93.91 35.44 14.22 13.93 18.54 35.46 21.49 117.29 16 ER1d ExonRegion 1 30.69 32.54 14.70 76.32 41.47 44.01 17.21 53.58 119.81 127.88 54.12 4.33 14.07 12.99 46.42 17.83 9.90 72.06 93.97 35.11 24.24 48.96 173.26 17 ER1e ExonRegion 1 32.71 26.62 15.15 70.25 36.24 43.51 14.80 49.18 112.06 123.66 43.40 4.33 8.10 12.11 34.55 17.83 15.60 62.15 60.81 31.14 44.68 41.10 132.15 18 E1_Ag KnownBoundary 1 468.97 282.25 250.67 263.24 856.79 760.53 700.64 210.42 112.04 290.00 388.41 20.26 30.19 222.73 431.67 1887.71 797.01 126.64 619.69 140.30 588.61 525.38 2242.83 19 ER1f ExonRegion 1 40.82 21.50 17.86 40.69 31.34 42.44 18.54 34.82 74.99 92.41 25.68 4.33 4.69 14.15 35.64 16.13 49.98 21.91 13.65 17.33 102.94 26.49 62.93 20 ER1g ExonRegion 1 59.26 55.78 29.58 24.73 61.67 84.27 90.47 18.03 36.88 56.36 35.90 3.30 4.24 14.62 30.81 14.86 103.74 5.81 4.70 18.84 160.45 17.36 44.89 21 ER1h ExonRegion 1 75.91 98.46 75.15 82.36 63.02 130.94 170.79 61.63 44.56 85.64 55.48 4.59 5.88 5.84 11.30 13.13 45.28 37.56 38.22 27.53 64.47 10.17 68.02 22 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E1b_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER2a ExonRegion 1 24.46 46.48 139.39 191.82 38.68 44.13 52.56 122.51 80.23 164.52 77.62 38.20 33.82 40.91 95.58 21.37 109.48 80.42 205.88 100.40 141.26 96.91 219.66 25 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER3a ExonRegion 1 15.18 13.42 7.06 30.15 40.15 29.46 18.10 39.72 10.77 22.75 10.60 6.48 12.94 19.72 28.23 40.90 6.41 9.18 11.50 10.92 11.45 15.29 67.48 28 E3_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E3a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER3b ExonRegion 0 32.67 15.91 20.99 45.21 33.48 14.98 28.71 27.15 16.39 16.40 11.19 9.16 11.15 20.09 36.48 28.34 17.89 18.62 12.10 16.11 13.19 8.87 35.38 31 E3_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER3c ExonRegion 0 99.48 147.34 438.94 563.93 208.43 145.30 216.98 323.06 170.14 288.49 79.79 97.36 105.69 106.70 191.42 177.91 137.60 200.80 107.52 263.38 104.62 69.70 246.64 33 E3_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E3b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER3d ExonRegion 0 243.16 311.22 506.09 618.30 597.49 250.59 472.79 440.75 237.57 342.13 136.56 266.59 257.79 192.83 398.42 330.59 212.76 342.34 241.93 505.37 178.05 118.69 443.36 36 E3_Dc NovelBoundary 1 528.09 511.75 282.22 325.43 593.12 373.31 628.04 275.48 125.20 196.82 113.08 58.07 173.04 154.98 244.14 312.23 216.27 208.47 135.35 448.25 152.84 61.23 527.29 37 Ix_AR2 ActiveIntronRegion 0 2.06 3.48 0.00 0.00 23.98 39.25 0.00 0.00 8.13 31.41 9.19 10.56 12.23 0.64 1.14 22.67 3.15 24.11 13.66 15.27 1.05 5.96 52.97 38 Ix_AR2 ActiveIntronRegion 0 3.31 3.91 97.08 89.66 7.40 10.15 8.28 97.59 48.26 85.73 43.95 1.59 2.82 14.12 21.70 19.30 36.94 52.56 11.49 45.30 32.06 28.32 20.84 39 Ix_SR1 SilentIntronRegion 0 4.76 1.53 0.00 0.00 30.10 17.88 13.90 1.96 0.00 1.30 10.18 0.00 0.00 42.70 23.04 6.69 0.00 0.00 16.72 3.19 9.92 17.19 8.81 40 E4_Aa NovelBoundary 1 348.95 169.97 729.16 598.43 483.11 278.36 234.42 612.33 320.14 434.95 354.51 49.07 77.11 335.04 680.14 389.39 206.36 550.54 207.16 411.50 225.36 297.23 442.61 41 ER4a ExonRegion 0 0.49 1.13 0.00 1.48 0.00 0.84 0.63 0.03 0.02 0.09 0.02 0.00 0.00 0.61 0.93 0.50 0.00 1.25 0.00 0.00 0.00 3.13 0.00 42 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 Ix Intron 0 6.36 2.20 27.43 53.80 8.36 8.08 13.00 55.75 11.28 25.47 1.86 3.87 3.21 3.05 9.59 8.57 8.07 4.63 3.57 9.55 16.95 1.34 11.18 44 Ix_SR1 SilentIntronRegion 0 6.91 2.39 29.77 58.38 8.96 8.77 14.10 60.50 12.24 27.64 2.02 4.20 3.48 3.31 10.40 9.30 8.75 5.02 3.88 10.27 18.39 1.45 12.12 45 ER5a ExonRegion 0 6.27 10.97 13.61 27.38 8.99 7.14 11.59 13.90 9.19 17.29 8.89 18.20 9.93 14.57 21.65 8.77 5.13 5.14 12.41 2.86 5.94 12.80 8.19 46 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 ER6a ExonRegion 0 10.27 3.67 4.40 1.57 4.11 4.76 7.35 0.32 1.00 2.61 0.07 0.00 2.04 0.18 1.99 0.94 0.00 2.43 0.27 0.00 0.00 0.13 0.08 48 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 ER7a ExonRegion 0 22.84 3.67 109.38 3.29 13.62 51.16 2.68 0.00 18.85 46.34 44.51 9.11 9.44 3.31 4.07 63.61 23.53 45.43 37.85 4.23 0.00 40.67 39.59 50 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 ER8a ExonRegion 0 3.25 2.30 47.26 1.08 2.57 13.62 5.55 0.00 12.08 25.55 21.01 1.86 2.48 0.99 0.00 4.94 12.09 17.41 4.05 1.92 0.00 5.17 4.44 52 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 ER9a ExonRegion 1 99.08 43.03 56.28 54.85 137.36 149.89 136.37 38.76 20.71 25.50 49.82 23.44 20.54 32.97 48.53 94.72 15.71 47.50 54.40 26.65 13.35 38.15 74.10 54 ER9b ExonRegion 0 10.58 18.30 4.90 21.81 16.05 3.67 10.59 24.20 8.65 10.32 9.66 8.66 4.69 8.12 23.21 11.89 9.90 9.24 12.74 14.89 6.61 4.17 17.62 55 ER9c ExonRegion 0 2.12 8.13 2.45 12.27 5.35 3.67 3.97 5.19 2.47 4.59 1.93 4.33 0.00 1.62 0.00 2.97 3.30 3.70 6.37 4.26 2.20 4.17 8.81