Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CNPY4 Gene 0 46.80 22.17 59.15 44.32 58.67 75.95 55.41 36.09 30.45 34.24 25.73 19.53 11.46 37.20 45.10 36.07 28.22 48.19 39.77 30.56 94.84 59.50 73.34 2 262932 Transcript 0 30.20 9.75 59.30 41.08 34.48 57.19 32.34 32.35 28.30 32.72 26.19 20.79 4.97 38.08 54.18 28.43 19.10 39.07 43.42 26.05 155.03 77.44 102.30 3 470153 Transcript 0 19.20 16.73 18.01 13.31 14.07 26.13 32.84 18.79 16.48 15.43 7.88 8.21 12.33 10.59 19.78 18.72 18.86 24.31 20.48 20.01 14.38 14.30 28.47 4 483756 Transcript 0 0.00 0.00 2.31 0.00 4.33 0.00 0.00 4.44 0.00 0.00 2.68 0.00 0.00 2.12 4.45 4.27 0.00 0.00 0.00 0.00 0.00 3.00 3.76 5 480692 Transcript 0 18.01 9.88 26.22 19.76 34.63 56.22 25.73 18.90 13.77 13.00 10.57 11.49 4.67 10.70 14.07 14.20 8.63 27.18 8.12 14.99 19.02 14.50 14.67 6 462193 Transcript 0 12.76 3.60 8.08 8.14 9.80 9.62 11.09 4.40 2.76 1.72 3.20 7.95 1.05 5.61 9.28 8.42 4.28 6.38 3.40 7.13 8.56 7.25 5.75 7 ER1a ExonRegion 0 32.74 12.05 40.13 16.12 36.75 99.44 49.19 18.36 16.92 20.68 29.91 2.98 6.02 24.65 33.55 31.05 26.20 25.86 35.92 20.95 130.27 49.04 85.84 8 E1_Da NovelBoundary 0 6.96 0.00 23.80 17.35 0.00 20.50 0.00 17.05 11.66 22.32 2.68 5.70 0.00 24.31 18.54 29.56 25.43 38.34 40.47 41.29 15.57 10.65 24.07 9 E1a_E4b KnownJunction 0 13.63 0.00 67.03 41.69 3.48 20.27 0.00 27.77 21.44 35.43 17.74 26.26 0.00 52.21 71.45 28.11 0.00 63.01 58.17 21.35 232.41 113.59 159.97 10 Ix Intron 0 2.35 4.51 0.00 1.13 14.83 20.33 11.74 0.00 4.08 3.79 2.14 4.38 0.00 5.08 5.20 9.89 1.83 5.10 5.30 8.26 12.22 4.62 4.88 11 Ix_AR1 ActiveIntronRegion 0 2.40 4.61 0.00 1.15 15.16 20.78 12.00 0.00 4.17 3.86 2.19 4.47 0.00 5.20 5.32 10.07 1.87 5.21 5.42 8.44 12.49 4.72 4.99 12 E2_Aa NovelBoundary 0 2.89 5.99 24.81 14.15 45.67 87.00 42.26 9.57 11.31 16.71 8.90 6.15 13.64 18.36 0.00 11.36 4.77 26.03 26.17 11.82 25.95 5.27 0.00 13 ER2a ExonRegion 0 2.94 7.65 8.10 7.00 11.41 45.16 43.38 9.10 8.03 7.61 6.74 0.00 3.32 7.15 15.15 10.53 9.40 13.42 5.71 5.56 11.66 8.16 10.32 14 E2_Ab KnownBoundary 0 0.00 25.72 13.48 20.28 33.53 73.99 75.61 20.25 16.96 26.19 12.27 0.00 0.00 19.07 17.80 36.74 9.54 36.73 13.08 18.34 25.14 5.45 19.63 15 ER2b ExonRegion 0 15.35 13.82 24.46 13.38 23.91 47.95 33.89 13.32 18.51 20.49 8.63 3.03 4.75 17.06 15.08 22.06 12.59 30.82 16.05 22.76 21.01 18.14 18.90 16 E2_Da NovelBoundary 0 10.15 12.70 13.78 15.22 27.67 49.01 19.87 31.54 26.19 15.47 0.00 12.90 14.77 2.47 18.67 12.30 9.26 24.00 12.05 35.22 33.73 23.39 27.66 17 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 3.62 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.91 4.42 0.00 2.41 5.76 3.67 18 E2a_E4b KnownJunction 0 0.00 0.00 2.31 0.00 4.33 0.00 0.00 4.44 0.00 0.00 2.68 0.00 0.00 2.12 4.45 4.27 0.00 0.00 0.00 0.00 0.00 3.00 3.76 19 Ix Intron 0 8.48 12.37 13.63 11.51 24.78 43.59 28.00 21.72 13.99 14.41 7.21 8.45 4.80 17.37 20.14 18.49 15.51 18.16 18.05 21.17 15.84 11.23 18.26 20 Ix_SR1 SilentIntronRegion 0 8.51 12.40 13.67 11.54 24.85 43.71 28.07 21.77 14.03 14.45 7.23 8.47 4.82 17.42 20.20 18.54 15.55 18.21 18.10 21.23 15.88 11.26 18.31 21 ER3a ExonRegion 0 54.65 42.54 45.94 32.91 30.80 33.25 51.53 47.28 40.12 38.66 16.90 24.64 33.67 24.61 44.20 45.63 47.19 57.59 51.30 54.47 29.07 28.98 71.43 22 E3_Da NovelBoundary 1 1555.46 1243.86 1135.09 1217.26 1173.85 999.88 1613.22 1090.97 982.66 906.99 353.46 868.93 1002.21 671.67 1159.90 1236.85 924.82 1393.04 843.88 1430.79 562.73 457.66 1143.52 23 E4_Aa NovelBoundary 0 44.82 111.23 8.13 13.05 35.06 17.49 22.21 45.80 14.26 22.27 0.00 0.00 0.00 0.00 0.00 11.11 4.21 10.78 0.00 14.70 22.49 0.00 3.84 24 ER4a ExonRegion 0 18.01 9.88 26.22 19.76 34.63 56.22 25.73 18.90 13.77 13.00 10.57 11.49 4.67 10.70 14.07 14.20 8.63 27.18 8.12 14.99 19.02 14.50 14.67 25 E4_Ab KnownBoundary 0 34.23 16.97 38.82 39.39 47.03 85.35 34.58 27.72 21.01 17.14 6.69 6.30 14.12 12.30 14.83 0.00 7.67 18.49 0.00 26.46 17.17 17.21 18.87 26 ER4b ExonRegion 0 23.82 17.20 92.14 57.33 69.82 104.51 46.02 50.70 32.00 42.87 25.57 20.10 15.67 47.43 49.32 56.89 26.54 87.56 53.82 35.73 160.35 97.36 151.35 27 E4_Da NovelBoundary 0 21.49 15.39 15.29 27.37 38.62 29.98 14.84 28.92 12.82 5.64 4.69 0.00 13.64 17.78 4.45 20.59 7.39 18.70 4.80 10.87 19.52 9.06 11.61 28 E4a_E5a KnownJunction 0 35.19 14.87 96.48 63.86 85.14 206.07 92.65 46.99 29.98 40.72 48.96 6.30 6.82 28.96 31.15 41.44 33.38 54.97 43.86 17.13 185.95 60.38 44.82 29 Ix_AR1 ActiveIntronRegion 0 4.23 0.00 4.90 5.45 4.62 11.00 10.59 1.73 1.24 1.15 0.00 12.99 0.00 4.43 16.62 17.83 0.00 1.85 7.53 14.89 15.43 5.30 8.81 30 E5_Aa NovelBoundary 0 14.30 11.71 22.68 6.93 25.55 2.90 11.70 19.22 8.36 4.38 7.95 18.76 6.82 0.00 13.85 13.07 16.83 4.60 0.00 3.26 5.00 3.12 4.10 31 ER5a ExonRegion 0 40.21 30.13 96.41 70.35 116.33 158.31 97.56 50.45 30.59 46.68 35.37 20.89 9.77 55.82 49.17 35.33 20.86 64.35 53.07 28.49 171.16 83.66 84.50 32 E5_Da NovelBoundary 0 27.49 0.00 21.88 25.77 8.40 34.92 19.83 15.36 2.98 1.56 5.16 6.30 6.82 7.24 0.00 8.72 8.60 4.23 8.28 14.45 13.90 0.00 8.37 33 E5a_E6a KnownJunction 0 69.12 33.48 105.32 72.88 102.12 119.31 84.00 55.04 33.94 49.67 7.26 6.00 19.15 74.87 32.88 32.81 33.94 57.41 63.81 28.06 165.56 93.32 93.13 34 E6_Aa NovelBoundary 0 34.75 0.00 18.95 8.89 4.33 19.87 13.96 18.89 2.92 7.04 5.16 6.30 5.84 9.65 13.85 12.65 21.22 20.64 9.32 17.90 8.28 8.82 25.27 35 ER6a ExonRegion 0 60.45 23.15 78.87 56.79 74.20 82.82 56.17 45.81 39.68 42.24 38.50 23.69 8.73 62.83 62.29 41.66 34.51 73.29 50.76 33.45 181.94 94.35 91.42 36 E6_Da NovelBoundary 1 3.78 2.76 19.16 10.82 11.80 13.97 7.77 12.94 1.79 5.72 7.63 18.91 0.00 0.00 0.00 0.00 22.81 8.75 0.00 22.05 11.43 5.76 12.21 37 E6a_E7a KnownJunction 0 6.45 0.00 0.00 0.00 0.00 0.00 2.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.19 0.00 0.00 0.00 0.00 0.00 38 E6a_E7b KnownJunction 0 84.39 8.68 113.12 52.91 86.25 49.80 33.03 23.33 34.03 33.66 33.17 6.30 13.31 50.09 41.54 42.98 28.99 60.31 21.65 14.70 167.05 74.40 83.57 39 E7_Aa NovelBoundary 0 36.15 6.45 23.21 29.97 28.44 24.47 25.22 31.30 12.18 9.91 2.42 11.85 13.64 7.18 34.49 11.79 8.42 4.89 8.47 8.31 8.96 7.96 10.93 40 ER7a ExonRegion 0 19.07 7.20 16.17 16.27 19.60 19.24 19.75 8.81 5.52 3.44 6.40 15.91 2.09 11.21 18.56 16.83 8.55 8.57 6.79 14.25 17.13 14.51 11.50 41 E7_Ab KnownBoundary 0 38.45 15.46 26.94 35.93 30.39 20.50 24.86 12.94 11.81 8.17 12.74 26.11 13.64 9.24 9.64 32.38 13.09 11.07 13.18 25.82 23.54 8.08 8.19 42 ER7b ExonRegion 0 118.96 35.75 104.07 73.49 81.85 99.81 77.88 66.38 40.30 46.83 38.28 23.13 22.85 76.18 67.18 47.81 29.76 87.11 66.62 31.21 172.57 118.42 132.50 43 E7a_E8a KnownJunction 0 113.28 39.86 90.24 70.05 114.09 126.01 91.86 50.32 42.65 46.90 31.64 25.06 13.31 82.47 81.34 66.56 25.15 54.39 55.25 23.39 171.49 104.40 136.84 44 E8_Aa NovelBoundary 0 23.63 2.96 6.62 2.83 21.90 4.54 20.98 6.53 5.06 3.92 2.68 12.60 0.00 2.12 4.45 3.59 4.77 4.35 4.14 15.08 2.84 2.94 19.29 45 ER8a ExonRegion 0 81.44 31.02 90.43 74.59 100.83 113.20 89.36 47.02 38.12 51.60 41.88 35.98 14.47 65.57 74.79 59.66 42.63 73.34 62.29 35.10 146.44 98.67 123.89 46 E8_Da KnownBoundary 0 116.91 69.59 71.43 78.11 112.39 87.39 112.79 49.62 39.61 54.74 23.16 50.27 6.01 35.73 51.55 56.48 71.62 100.11 60.33 42.63 122.69 103.85 87.84 47 ER8b ExonRegion 0 112.91 44.21 103.78 89.35 143.08 128.40 107.80 48.75 51.29 62.10 46.93 29.47 9.15 62.56 92.31 60.53 55.29 82.06 83.52 47.36 157.01 123.75 128.37 48 E8_Db KnownBoundary 1 65.86 27.69 116.14 83.01 90.49 116.47 109.04 46.09 53.18 57.46 59.59 0.00 6.82 57.86 64.28 32.21 43.57 38.14 38.59 38.86 175.57 80.34 78.11 49 ER8c ExonRegion 0 44.24 17.21 70.74 65.43 63.21 51.86 47.83 50.91 46.54 42.04 30.93 33.12 8.88 37.37 57.55 26.14 31.09 28.34 36.16 35.85 102.42 69.69 61.08