Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TMEM168 Gene 0 66.33 67.16 82.07 80.54 95.61 83.25 101.25 52.12 31.79 72.75 86.86 121.55 146.86 70.38 50.45 63.24 64.08 31.76 33.83 52.42 49.41 122.74 79.71 2 312814 Transcript 0 57.17 41.02 76.27 69.91 75.22 57.48 66.58 41.15 22.07 54.36 40.88 59.83 57.59 30.21 45.89 23.47 26.32 10.15 15.17 25.68 11.98 78.30 29.65 3 447395 Transcript 0 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 4.65 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 2.69 13.83 4 454074 Transcript 0 15.03 9.40 2.98 7.37 4.86 1.71 13.54 3.42 4.42 6.57 4.60 12.99 17.45 5.65 0.38 3.78 6.51 2.15 1.79 3.46 2.80 2.34 6.86 5 441474 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 449743 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 418785 Transcript 0 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.12 4.45 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 8 480969 Transcript 1 11.44 8.24 8.05 11.93 15.33 11.10 16.40 8.76 9.07 14.35 9.75 46.87 87.91 15.83 7.05 12.89 6.01 6.91 7.73 9.75 17.49 18.12 16.89 9 IG5_AR2 ActiveIntergenicRegion 0 5.09 8.64 8.31 10.14 4.01 1.83 1.32 2.38 4.28 3.44 2.72 0.00 3.96 1.17 5.80 7.06 12.07 1.85 15.93 5.45 3.86 0.00 4.22 10 ER1a ExonRegion 0 0.63 1.22 2.07 0.92 1.35 1.01 0.40 0.00 2.49 3.89 1.91 0.00 1.16 3.00 5.77 0.00 3.90 1.42 1.91 1.28 1.32 0.00 2.38 11 E1_Ab KnownBoundary 0 0.00 0.00 1.83 2.06 4.07 2.27 0.00 0.00 1.45 1.67 2.16 0.00 0.00 2.47 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 7.77 12 E1_Ac KnownBoundary 0 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 3.39 0.00 2.58 0.00 0.00 2.47 0.00 0.00 0.00 2.36 0.00 0.00 0.00 0.00 0.00 13 ER1b ExonRegion 0 0.00 0.00 2.86 1.36 1.43 0.49 0.00 0.23 2.47 2.18 3.87 0.00 0.00 3.79 2.80 0.00 5.50 3.70 2.97 0.00 0.95 0.00 8.22 14 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1_Ae KnownBoundary 0 0.00 0.00 5.50 1.33 0.00 0.00 0.00 1.89 0.00 9.97 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 7.93 3.15 0.00 0.00 16 ER1c ExonRegion 0 0.00 0.00 4.90 1.36 0.00 0.00 0.00 1.73 2.47 4.97 3.87 0.00 0.00 4.33 2.90 0.00 6.60 3.70 3.19 0.00 2.20 0.00 5.87 17 ER1d ExonRegion 0 0.00 0.00 4.57 0.50 0.00 0.00 0.00 1.73 2.47 5.21 3.16 0.00 0.00 4.43 1.32 0.00 6.60 3.36 3.19 0.00 2.20 0.00 5.07 18 ER1e ExonRegion 0 4.47 4.33 15.29 10.44 6.85 9.01 5.56 10.87 11.95 23.85 44.39 11.37 11.07 31.24 12.96 26.12 52.90 22.85 8.23 31.85 53.18 30.34 39.20 19 E1_Da NovelBoundary 0 6.89 0.00 21.64 11.12 3.57 0.00 2.03 14.83 18.69 20.66 4.58 0.00 0.00 19.78 0.00 49.56 16.55 23.01 39.72 8.88 9.95 6.06 38.41 20 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.41 1.16 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 0.00 0.00 0.00 3.12 7.60 21 E1a_E3a KnownJunction 1 0.00 11.77 7.48 12.89 0.00 7.67 4.33 5.59 6.13 15.07 18.90 6.30 48.70 62.69 33.01 67.59 16.74 74.12 26.73 40.01 32.87 83.46 160.40 22 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E1a_E5a KnownJunction 0 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 4.65 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 2.69 13.83 24 I1 Intron 0 28.15 19.61 18.30 24.33 19.90 7.86 19.61 16.72 13.81 19.07 13.53 20.65 27.32 14.51 10.69 21.17 21.02 7.01 13.25 17.71 14.73 5.65 13.33 25 I1_AR1 ActiveIntronRegion 0 18.72 19.28 18.47 19.59 13.22 7.45 17.20 15.80 13.06 18.93 12.78 14.37 16.80 13.88 8.89 21.31 18.94 7.40 13.20 16.95 16.33 4.98 12.17 26 I1_SR1 SilentIntronRegion 0 64.61 21.12 17.84 42.80 45.76 9.51 29.11 20.45 16.86 19.83 16.53 44.95 67.99 17.09 17.72 20.88 29.23 5.62 13.62 20.79 8.75 8.27 17.94 27 E2_Aa NovelBoundary 0 48.90 34.01 31.55 71.89 43.63 24.93 47.43 49.66 21.18 54.96 11.42 38.71 71.91 23.54 19.28 7.78 24.50 10.45 8.09 23.07 11.37 13.84 7.43 28 ER2a ExonRegion 1 45.10 28.20 8.94 22.11 7.97 5.14 28.27 6.86 12.11 15.60 9.39 38.97 52.36 14.53 1.15 11.33 15.31 4.04 5.36 10.38 8.40 3.89 12.97 29 E2_Da NovelBoundary 0 41.41 29.01 39.89 50.54 94.14 29.07 36.57 60.79 19.30 39.08 23.48 64.07 27.27 2.12 10.01 33.41 8.60 4.35 13.93 22.37 5.87 2.69 16.13 30 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 6.62 0.00 12.37 0.00 0.00 1.37 4.42 0.00 0.00 2.41 0.00 0.00 4.21 0.00 0.00 0.00 0.00 0.00 0.00 31 I2 Intron 0 16.75 19.73 21.51 24.97 28.74 5.89 23.45 18.22 15.11 19.80 10.16 31.89 51.28 13.65 10.60 15.04 14.46 2.75 9.92 14.36 5.29 9.19 9.62 32 I2_SR1 SilentIntronRegion 0 23.18 5.57 8.75 9.73 27.48 0.00 16.77 15.87 6.30 9.94 4.63 26.99 38.81 10.92 4.91 12.21 5.65 1.57 6.54 8.74 2.26 1.43 9.05 33 I2_AR1 ActiveIntronRegion 0 23.90 16.03 30.58 29.45 26.82 8.03 27.58 20.06 14.87 15.30 7.34 26.60 33.91 10.85 12.26 14.75 10.28 2.78 11.16 12.22 4.29 6.69 9.43 34 I2_SR2 SilentIntronRegion 0 11.55 24.28 18.38 24.94 30.13 5.63 22.21 17.57 16.75 24.10 12.75 35.86 63.61 15.78 10.60 15.72 18.40 2.93 9.78 16.58 6.39 11.96 9.85 35 E3_Aa NovelBoundary 1 17.78 46.97 5.32 14.38 26.49 2.38 15.68 20.95 2.63 29.92 19.43 54.92 145.28 14.66 10.75 11.88 21.22 4.60 0.00 18.02 5.93 11.51 12.80 36 ER3a ExonRegion 0 13.17 81.22 13.54 21.43 42.73 85.58 57.72 18.84 12.64 31.52 45.35 55.89 113.56 51.28 16.53 52.21 59.02 46.68 26.32 51.67 21.84 62.25 111.74 37 E3_Da KnownBoundary 1 13.63 79.66 12.65 42.65 81.66 262.12 113.32 32.86 12.62 34.30 41.80 88.83 160.54 72.05 18.05 31.19 54.42 9.49 13.18 43.85 20.45 64.23 50.28 38 E3a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER3b ExonRegion 1 27.75 68.16 39.41 51.85 70.93 73.32 94.83 49.14 33.57 68.53 99.16 175.03 228.33 86.54 27.55 70.37 83.40 28.61 36.06 67.14 46.31 137.89 87.17 40 E3_Ab KnownBoundary 1 37.86 61.37 33.62 44.95 71.73 88.70 101.97 43.54 21.27 49.94 55.86 117.64 123.53 85.00 23.73 78.95 95.00 35.48 16.66 63.66 66.97 92.52 126.51 41 E3_Ac KnownBoundary 0 7.56 6.45 16.29 20.04 52.21 39.13 72.43 17.21 8.65 27.91 52.49 55.82 85.87 48.09 15.95 71.35 54.60 46.68 18.82 44.36 57.76 126.63 45.93 42 ER3c ExonRegion 1 21.87 41.80 47.83 63.05 71.55 79.26 102.09 52.30 31.11 66.05 84.12 119.46 150.43 93.24 22.78 102.48 111.25 62.41 28.55 73.52 83.41 152.17 113.99 43 E3_Ad KnownBoundary 1 14.08 46.97 26.67 47.88 58.15 46.96 69.11 38.32 28.10 36.00 75.55 80.88 166.87 64.69 6.30 65.88 67.04 45.93 55.72 62.32 47.82 97.91 65.22 44 ER3d ExonRegion 1 17.89 44.00 49.57 62.07 82.70 63.35 103.99 45.10 33.68 67.98 107.36 132.25 212.76 96.86 20.31 121.59 110.13 71.89 49.52 84.53 82.14 174.26 102.78 45 ER3e ExonRegion 1 20.04 48.76 49.90 57.94 72.64 49.08 109.27 51.12 27.93 60.69 114.74 182.67 175.93 110.61 37.04 107.50 95.66 59.99 50.29 70.71 69.86 150.41 97.10 46 E3_Db NovelBoundary 1 14.15 44.99 14.46 19.41 39.64 15.22 55.16 20.62 15.31 17.57 17.53 93.93 83.44 22.49 4.45 61.10 40.86 6.80 30.97 38.61 42.19 20.39 55.83 47 E3b_E5a KnownJunction 1 24.15 44.66 53.22 49.18 79.20 52.81 107.05 54.87 20.80 64.60 114.24 174.51 108.60 113.84 28.31 78.44 104.07 44.77 52.99 55.48 67.89 146.65 115.92 48 I3 Intron 0 8.30 12.78 8.18 14.99 12.90 8.30 22.64 14.12 13.54 15.24 13.70 43.50 59.25 16.52 7.69 21.79 17.69 8.85 11.48 20.52 18.62 18.52 21.32 49 I3_AR1 ActiveIntronRegion 0 7.64 21.13 5.35 24.14 12.80 3.00 21.55 6.74 14.77 15.17 11.09 40.83 72.65 9.00 6.80 22.03 23.66 8.79 11.30 25.70 15.02 18.18 20.12 50 I3_SR1 SilentIntronRegion 0 7.14 13.52 6.47 13.13 9.46 4.15 20.02 11.66 11.65 15.35 12.29 30.53 39.36 15.22 6.15 27.72 18.56 11.54 12.45 19.76 25.18 10.62 26.60 51 I3_AR2 ActiveIntronRegion 0 6.73 9.70 9.99 16.40 13.92 12.07 26.31 17.53 16.36 14.36 17.02 56.08 82.75 17.84 8.50 16.75 16.30 5.94 10.80 21.51 13.71 25.16 17.92 52 I3_SR2 SilentIntronRegion 0 12.65 13.94 9.37 14.46 17.67 11.67 22.58 15.42 12.82 16.30 12.27 49.98 59.80 18.66 9.53 18.21 16.86 8.09 10.78 19.51 14.56 23.57 16.96 53 E4_Aa NovelBoundary 1 26.45 16.58 18.72 23.81 17.74 19.53 43.01 25.55 21.41 18.16 12.00 67.67 154.37 12.30 0.00 10.60 3.93 7.71 8.56 29.85 3.09 19.96 12.04 54 ER4a ExonRegion 1 22.87 16.49 16.09 23.86 26.84 22.20 32.80 14.97 18.14 28.70 19.50 93.73 160.73 21.96 14.11 21.51 12.02 13.83 10.66 19.50 26.96 36.24 29.42 55 E4_Da NovelBoundary 1 35.64 59.86 25.84 47.05 89.73 29.64 53.44 12.61 29.63 27.67 39.38 134.59 248.04 38.26 42.40 36.57 34.50 29.22 33.32 39.37 86.98 40.41 53.78 56 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 3.82 0.00 0.00 2.55 0.00 0.00 0.00 0.00 15.10 9.71 0.00 4.27 0.00 0.00 4.80 0.00 8.03 0.00 4.35 57 I4 Intron 0 15.07 16.01 12.87 19.90 31.38 21.88 30.78 14.35 11.27 20.81 15.15 49.18 57.59 11.87 9.87 14.00 9.08 4.78 6.57 14.41 8.41 29.52 16.76 58 I4_SR1 SilentIntronRegion 0 5.40 5.56 10.64 14.06 15.60 12.36 20.98 6.57 6.37 11.83 11.97 53.61 73.57 17.31 7.77 18.95 9.62 9.71 12.76 18.99 20.06 25.43 21.92 59 I4_AR1 ActiveIntronRegion 0 12.58 17.59 11.41 20.16 28.44 19.47 25.43 15.12 11.33 22.44 12.17 48.43 56.98 8.66 8.32 9.64 7.20 3.15 4.11 12.81 3.91 27.40 12.59 60 I4_SR2 SilentIntronRegion 0 27.44 20.36 17.67 23.73 49.25 34.04 49.42 18.46 14.74 23.98 23.87 47.77 47.56 14.76 14.75 19.73 12.71 4.66 7.33 14.56 9.51 37.16 21.94 61 E5_Aa NovelBoundary 0 60.16 26.05 57.48 51.34 46.86 44.29 54.45 49.82 28.12 39.06 35.01 34.66 61.85 31.61 17.80 17.43 39.36 9.41 35.30 24.03 34.90 32.15 64.11 62 ER5a ExonRegion 0 67.36 79.18 86.70 84.80 109.61 99.09 133.82 65.54 30.31 74.61 142.71 152.74 197.28 130.71 63.77 112.48 110.13 62.46 64.38 76.91 118.25 166.91 151.33 63 E5a_E6a KnownJunction 0 68.09 81.63 73.71 101.62 108.83 125.21 220.28 57.34 40.51 73.57 151.04 141.20 151.61 127.91 57.23 146.54 99.30 75.24 77.93 78.23 113.92 129.20 144.01 64 E5a_E6b KnownJunction 0 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.12 4.45 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 65 I5 Intron 0 11.10 12.74 19.81 15.68 15.45 6.90 16.86 10.03 8.32 12.97 3.00 20.37 20.01 3.90 4.91 5.20 4.25 2.37 3.99 3.65 1.60 9.42 2.71 66 I5_SR1 SilentIntronRegion 0 11.13 12.78 19.86 15.71 15.48 6.91 16.90 10.05 8.34 13.00 3.01 20.42 20.06 3.91 4.93 5.21 4.25 2.38 4.00 3.66 1.60 9.44 2.72 67 ER6a ExonRegion 0 71.65 70.13 79.05 91.35 123.80 160.52 161.72 45.78 38.65 72.98 162.03 204.54 264.82 128.38 60.86 134.33 121.57 78.19 77.30 80.70 137.33 125.88 133.37 68 E6_Da KnownBoundary 0 100.83 78.47 106.38 81.08 197.28 179.27 156.29 51.01 40.77 80.99 174.41 305.50 290.57 114.49 78.99 136.29 142.87 58.62 72.38 83.92 148.27 139.49 138.03 69 ER6b ExonRegion 0 68.16 83.38 92.17 82.15 140.65 118.48 135.06 47.92 43.16 79.52 185.92 172.86 256.39 131.48 59.33 142.45 113.62 59.18 47.60 73.97 129.76 132.62 151.73 70 E6_Db KnownBoundary 0 102.02 83.87 85.09 91.43 122.58 127.09 130.68 50.15 38.83 83.65 179.15 183.66 394.29 140.15 50.93 99.63 139.69 53.85 52.43 92.62 112.74 138.94 170.98 71 ER6c ExonRegion 0 78.46 68.74 86.67 95.44 99.84 84.14 121.64 54.08 42.90 96.07 183.66 145.04 195.59 148.16 70.02 138.34 129.02 66.43 64.06 86.04 137.85 146.94 154.13 72 E6_Ab KnownBoundary 1 42.16 57.62 74.89 59.13 56.71 68.20 73.22 51.67 32.52 54.02 134.61 113.89 156.16 88.06 21.26 63.15 49.84 27.94 58.26 69.73 77.10 72.56 83.06 73 E6_Dc NovelBoundary 0 48.01 45.32 35.39 39.62 40.75 49.29 80.02 15.53 9.75 24.77 59.49 84.63 62.50 44.79 19.66 58.53 45.44 29.02 32.85 45.32 60.05 74.15 95.52 74 ER6d ExonRegion 1 86.25 78.55 94.66 80.50 70.74 83.90 98.30 54.88 35.82 70.96 151.73 138.81 167.08 114.50 38.08 105.14 75.92 57.16 66.49 80.58 112.11 120.19 147.75 75 E6d_E7a KnownJunction 0 168.40 101.82 106.92 95.03 117.66 111.53 108.55 68.92 43.03 75.40 153.51 67.67 129.70 122.43 41.04 143.98 120.62 82.70 74.45 91.21 139.62 155.66 173.97 76 ER6e ExonRegion 0 105.12 81.73 99.37 85.15 86.26 90.99 95.39 60.41 42.11 72.69 145.80 110.30 144.05 115.62 42.83 116.05 101.54 69.86 64.01 81.86 122.57 139.20 160.82 77 ER7a ExonRegion 0 115.02 111.80 122.88 109.41 146.44 132.42 158.89 58.90 36.47 90.97 137.54 132.35 145.16 109.25 75.32 116.86 96.97 70.56 65.08 67.87 104.55 164.72 149.73 78 E7_Da KnownBoundary 0 123.80 167.73 105.05 134.45 163.92 172.29 166.71 57.38 23.03 91.81 84.71 83.28 140.09 87.82 58.47 65.71 62.18 33.12 69.27 51.26 33.17 144.08 115.15 79 ER7b ExonRegion 0 107.18 136.67 120.59 110.22 145.73 125.26 138.91 59.61 28.69 98.13 88.96 96.69 131.68 65.38 59.22 56.55 59.33 32.88 49.90 47.14 25.65 147.88 102.93 80 E7_Db KnownBoundary 0 139.65 149.25 112.74 71.75 173.85 103.52 167.42 45.88 25.78 71.02 85.81 133.39 122.07 54.92 52.78 41.44 64.42 16.25 26.73 53.05 35.27 156.02 85.62 81 ER7c ExonRegion 0 111.88 117.03 132.58 98.21 125.45 93.42 116.59 55.79 33.25 86.92 108.24 99.41 92.33 61.81 51.60 45.86 51.13 19.67 20.11 36.55 42.39 136.61 84.24 82 E7_Dc KnownBoundary 0 144.77 134.45 136.31 117.90 140.83 110.79 125.60 59.02 36.66 74.65 104.24 109.39 88.96 69.93 49.69 44.01 42.45 15.71 15.72 44.42 31.69 109.79 103.55 83 ER7d ExonRegion 0 113.70 80.81 150.47 138.90 149.08 113.94 132.76 82.30 41.64 104.83 79.86 119.65 114.02 57.42 86.01 46.94 48.73 18.88 28.43 50.08 22.63 156.59 56.91 84 IG4_AR6 ActiveIntergenicRegion 0 8.26 14.81 17.77 30.15 30.19 17.39 25.40 18.08 7.41 14.95 2.30 23.18 13.45 3.25 5.54 2.82 2.81 2.70 5.18 6.48 3.59 28.35 10.02 85 IG4_SR5 SilentIntergenicRegion 0 10.39 9.13 16.81 29.66 25.83 26.28 20.18 10.25 5.50 12.22 0.89 8.94 13.00 4.36 1.35 5.75 7.87 5.02 8.20 5.95 8.25 21.54 11.44 86 IG4_AR5 ActiveIntergenicRegion 0 14.27 13.41 14.67 29.47 30.41 22.30 24.58 17.03 9.68 17.06 1.76 11.03 13.34 2.05 2.57 0.97 3.04 2.66 4.48 5.45 0.72 19.20 8.80 87 IG4_SR4 SilentIntergenicRegion 0 6.82 9.62 9.55 20.25 26.68 11.01 18.40 11.66 7.55 14.10 0.50 6.47 9.49 1.61 3.64 1.46 1.62 1.14 1.32 4.48 0.54 13.27 5.03 88 IG4_AR4 ActiveIntergenicRegion 0 5.44 9.99 6.72 12.60 18.77 16.00 17.58 9.13 8.74 8.60 1.49 8.74 5.15 1.32 2.26 3.26 2.95 1.20 3.50 5.14 0.36 12.48 2.58