Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LSM8 Gene 0 53.29 54.07 44.94 37.11 69.34 41.81 57.06 38.92 18.77 33.54 63.08 114.29 67.49 74.19 79.75 67.59 64.90 18.36 27.81 34.97 15.41 43.09 29.28 2 249299 Transcript 1 21.02 77.24 20.31 31.91 47.60 55.49 43.56 26.86 20.22 33.69 20.53 86.04 40.34 35.26 24.00 21.26 19.13 14.62 17.16 36.34 8.49 22.67 12.69 3 424702 Transcript 0 31.63 20.61 22.43 22.19 48.55 23.22 41.97 22.87 10.01 16.68 24.71 70.08 54.16 43.65 35.87 41.42 30.20 11.28 12.57 20.62 10.15 29.89 21.14 4 422760 Transcript 0 58.85 16.99 13.40 21.66 50.61 24.48 39.67 24.12 9.14 19.22 44.72 94.39 64.75 68.73 47.31 65.24 50.67 9.37 12.92 13.88 5.26 19.68 11.73 5 411938 Transcript 0 6.67 0.00 0.00 0.00 4.07 0.00 6.32 9.57 0.00 0.00 5.05 6.30 14.93 9.71 4.45 8.20 13.56 0.00 3.67 0.00 5.13 0.00 0.00 6 ER1a ExonRegion 0 6.18 3.53 3.33 5.69 11.22 35.90 17.11 3.66 2.52 5.58 6.35 0.00 0.00 19.30 15.30 7.55 8.35 8.34 6.12 2.52 7.29 6.99 7.46 7 E1_Ab KnownBoundary 0 14.22 0.00 7.27 8.92 4.33 38.61 14.66 3.90 2.78 7.90 2.63 0.00 7.47 21.60 4.45 3.25 4.58 2.07 13.46 3.13 0.00 7.72 3.16 8 E1_Ac KnownBoundary 0 22.52 20.06 3.37 2.00 51.87 107.10 62.89 2.38 1.65 1.61 26.74 0.00 0.00 14.48 6.30 21.79 37.49 11.19 33.51 13.04 18.90 37.54 21.77 9 E1_Ad KnownBoundary 1 90.61 86.30 65.14 38.56 241.00 284.89 183.94 45.30 13.83 54.15 79.28 0.00 0.00 108.78 124.48 134.15 81.81 76.19 129.98 106.68 56.28 35.70 194.03 10 ER1b ExonRegion 1 48.68 51.35 42.17 27.37 102.57 193.16 106.58 29.96 9.16 41.48 54.60 0.00 0.00 111.66 117.26 69.84 53.91 50.35 75.12 46.99 35.63 43.93 84.67 11 ER1c ExonRegion 1 73.12 70.25 64.72 37.17 196.79 255.23 179.10 46.20 17.07 50.36 94.36 0.00 0.00 162.56 179.35 125.64 89.42 71.56 136.10 87.23 61.90 52.09 158.85 12 ER1d ExonRegion 1 276.39 202.80 210.75 90.50 385.22 292.02 285.98 122.72 64.34 107.74 531.30 13.69 10.67 537.15 716.61 531.29 665.45 180.06 284.82 167.11 165.43 116.05 281.34 13 E1_Da KnownBoundary 1 17.11 3.35 13.48 6.63 11.71 0.00 11.17 11.09 4.63 17.06 25.64 12.90 0.00 12.24 13.35 65.88 14.31 21.72 13.65 6.39 2.29 9.00 12.38 14 E1a_E1f KnownJunction 1 121.21 89.13 236.60 92.06 122.41 62.98 104.18 122.24 68.63 116.02 176.15 54.47 27.11 137.27 269.61 248.40 273.49 108.86 152.47 73.50 37.56 61.60 81.27 15 E1_Db KnownBoundary 0 13.19 0.00 1.33 0.00 4.33 0.00 10.47 0.00 2.84 5.40 7.53 0.00 6.33 16.48 10.75 24.44 30.48 5.06 9.22 2.68 5.62 0.00 4.18 16 E1b_E1e KnownJunction 0 6.67 0.00 0.00 0.00 4.07 0.00 6.32 9.57 0.00 0.00 5.05 6.30 14.93 9.71 4.45 8.20 13.56 0.00 3.67 0.00 5.13 0.00 0.00 17 ER1e ExonRegion 0 17.83 1.96 6.88 5.14 9.67 0.49 16.80 12.63 5.08 13.45 25.05 11.32 4.51 21.24 16.18 66.76 33.77 18.34 12.74 6.06 5.85 6.97 10.62 18 ER1f ExonRegion 0 58.85 16.99 13.40 21.66 50.61 24.48 39.67 24.12 9.14 19.22 44.72 94.39 64.75 68.73 47.31 65.24 50.67 9.37 12.92 13.88 5.26 19.68 11.73 19 E1_Ae KnownBoundary 0 71.57 9.60 21.52 17.58 22.58 13.23 18.37 17.37 10.30 15.82 27.01 39.01 6.82 30.20 34.74 27.26 29.45 3.44 4.71 6.14 5.99 3.00 15.79 20 E1_Af KnownBoundary 0 42.16 6.71 40.68 20.01 28.61 12.83 54.63 22.59 0.00 13.03 17.58 30.01 41.39 26.13 15.58 47.51 48.99 3.90 8.85 23.27 5.50 10.59 16.22 21 ER1g ExonRegion 0 121.25 24.40 81.22 45.56 66.51 41.65 84.92 61.24 20.82 44.73 85.32 117.51 65.66 103.25 101.54 118.04 124.02 27.72 38.22 36.47 17.31 27.09 37.76 22 ER1h ExonRegion 0 186.73 95.22 253.25 113.15 152.05 81.60 136.40 130.28 67.59 140.01 296.89 204.89 138.36 226.08 320.30 279.38 331.66 66.29 130.68 100.37 71.01 109.07 86.04 23 E1_Dc NovelBoundary 0 0.00 0.00 5.23 2.06 4.33 10.56 19.25 2.55 1.45 0.00 14.69 12.60 6.33 19.78 20.15 12.39 13.09 0.00 0.00 9.78 8.28 2.39 4.18 24 E1c_E2a KnownJunction 0 280.12 109.98 246.18 118.57 146.26 85.46 103.16 109.22 50.78 128.45 329.03 214.12 125.32 204.13 382.22 164.32 288.27 23.75 76.61 89.04 110.15 130.92 55.74 25 I1 Intron 0 3.31 1.25 3.47 3.18 6.93 1.65 12.23 4.16 3.64 2.41 10.31 39.91 29.43 10.96 5.92 8.62 11.94 1.77 2.45 3.55 1.19 9.03 3.16 26 I1_SR1 SilentIntronRegion 0 3.34 0.72 3.24 2.05 3.64 1.93 9.06 6.24 3.24 2.03 12.62 38.24 30.62 11.09 4.61 8.42 12.03 1.09 3.20 4.15 0.71 8.87 3.63 27 I1_AR1 ActiveIntronRegion 0 1.87 1.62 2.33 2.90 8.32 1.35 13.64 1.43 3.06 1.93 5.11 40.62 33.53 9.47 4.33 6.48 4.95 0.29 0.76 2.94 1.14 7.71 2.90 28 I1_AR2 ActiveIntronRegion 0 6.22 2.33 6.99 4.73 12.53 2.20 17.63 3.06 5.68 4.23 13.52 49.28 22.23 13.31 9.42 12.85 20.06 5.93 3.13 3.95 2.88 11.83 3.69 29 I1_SR2 SilentIntronRegion 1 8.02 0.11 1.23 4.52 22.81 3.38 19.09 1.73 5.59 3.44 15.97 26.20 27.89 22.48 10.08 6.88 29.71 2.43 0.00 1.90 0.00 12.83 0.00 30 I1_AR3 ActiveIntronRegion 0 2.73 0.67 2.73 7.52 6.56 0.00 12.46 6.52 3.95 2.80 12.10 29.68 20.69 10.29 12.58 10.45 22.38 3.32 4.30 2.14 0.74 9.56 0.99 31 E2_Aa NovelBoundary 1 3.78 0.00 5.32 7.29 3.74 8.57 28.09 16.88 2.66 1.13 9.05 64.37 26.95 24.19 6.30 8.54 4.77 0.00 0.00 2.88 0.00 12.49 0.00 32 ER2a ExonRegion 0 147.61 140.22 385.25 189.08 141.31 89.81 120.90 220.76 111.77 184.36 686.35 416.03 206.25 563.53 807.82 402.05 686.15 134.97 275.56 199.72 149.87 227.40 226.53 33 E2_Da KnownBoundary 1 3.63 3.35 8.37 23.67 15.20 5.11 25.26 25.92 7.67 19.07 13.95 43.06 69.48 33.26 24.85 4.36 20.76 10.82 4.14 15.60 0.00 25.96 24.67 34 E2a_E2b KnownJunction 1 161.21 234.04 572.84 262.10 217.32 148.21 155.59 244.23 142.39 233.70 421.95 541.23 150.96 226.62 723.53 545.75 281.63 167.18 200.38 226.46 66.90 239.79 226.13 35 ER2b ExonRegion 0 31.63 20.61 22.43 22.19 48.55 23.22 41.97 22.87 10.01 16.68 24.71 70.08 54.16 43.65 35.87 41.42 30.20 11.28 12.57 20.62 10.15 29.89 21.14 36 E2_Ab KnownBoundary 0 44.16 15.33 54.55 47.48 106.88 23.57 52.02 54.14 13.02 25.14 26.16 90.93 39.93 55.51 63.79 12.39 18.33 10.94 4.80 21.22 13.90 27.49 11.35 37 ER2c ExonRegion 1 246.64 393.59 316.78 188.30 296.68 185.11 222.35 199.92 83.28 168.77 293.30 630.82 216.40 184.21 400.90 195.30 184.06 37.93 95.72 135.08 32.54 263.98 76.67 38 E2_Db KnownBoundary 1 252.27 323.36 48.11 37.26 35.48 38.50 54.72 59.52 20.05 66.97 7.00 248.33 108.43 52.50 79.49 30.16 8.51 1.87 0.00 29.08 2.97 85.79 11.10 39 E2_Dc KnownBoundary 1 84.31 232.00 4.91 18.38 41.60 36.74 51.76 26.12 11.95 35.57 4.74 181.86 62.33 26.55 10.63 4.36 0.00 0.00 9.60 27.74 0.00 23.57 6.83 40 ER2d ExonRegion 1 242.69 402.42 47.38 54.21 57.38 62.15 77.23 77.40 26.90 83.72 17.61 479.61 151.64 69.48 108.96 27.74 7.34 1.85 14.87 45.39 1.71 63.89 13.05 41 ER2e ExonRegion 1 35.85 150.95 37.30 58.12 83.99 75.08 70.01 50.07 37.91 61.81 34.70 172.08 80.68 51.22 32.69 34.96 29.91 20.91 28.20 70.15 9.68 38.35 17.92 42 IG39 Intergenic 0 13.84 35.72 12.47 33.16 42.53 41.18 15.58 16.66 21.81 22.62 5.45 22.31 14.53 8.45 6.15 4.70 3.91 6.00 6.58 17.51 1.35 7.84 3.17 43 IG39_SR1 SilentIntergenicRegion 0 16.96 44.68 6.26 13.42 41.31 30.73 42.11 13.67 12.89 15.15 4.04 78.19 31.12 32.70 5.01 11.30 7.60 6.92 15.69 61.32 1.70 21.34 6.76 44 IG39_AR1 ActiveIntergenicRegion 0 17.59 44.23 7.20 16.27 24.58 30.60 27.64 13.94 13.28 17.35 6.28 36.26 20.23 31.67 0.00 0.56 0.21 7.62 16.13 35.51 0.00 8.46 0.00 45 IG39_AR2 ActiveIntergenicRegion 0 9.74 15.25 2.57 8.31 13.65 16.87 13.37 4.67 5.56 10.44 2.13 12.99 6.10 11.69 0.00 0.00 0.00 2.59 0.32 13.40 0.00 3.75 0.00 46 IG39_AR4 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.69 7.91 11.27 1.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 IG39_AR5 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40.13 9.20 12.18 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 IG39_AR6 ActiveIntergenicRegion 0 22.84 63.13 20.58 52.04 91.84 58.15 58.85 42.85 33.30 53.41 22.64 92.85 45.62 42.41 17.76 21.04 16.39 13.69 17.10 53.01 5.20 37.04 5.92 49 IG39_AR7 ActiveIntergenicRegion 0 32.32 138.13 29.32 70.91 96.45 89.25 64.16 49.07 40.69 61.57 22.65 101.97 49.07 37.45 12.64 17.57 18.03 11.80 17.73 46.62 2.17 34.11 8.11 50 IG39_AR8 ActiveIntergenicRegion 0 33.70 154.09 39.03 78.64 107.28 92.24 77.66 49.77 44.32 74.53 23.67 106.77 70.08 17.50 9.85 15.70 25.29 9.13 18.39 76.43 4.12 37.39 8.09 51 IG39_AR9 ActiveIntergenicRegion 0 32.20 135.70 47.27 81.94 89.84 68.80 85.26 58.56 52.92 80.32 15.99 114.93 39.51 46.12 29.28 13.06 12.10 13.49 26.35 105.35 0.87 39.59 8.81 52 IG39_SR2 SilentIntergenicRegion 0 43.78 143.60 75.15 123.25 106.45 77.76 72.57 72.75 73.36 85.46 21.59 154.49 74.07 41.02 21.14 18.54 25.07 12.64 45.45 111.19 2.23 43.16 7.09 53 IG39_AR10 ActiveIntergenicRegion 0 44.03 188.45 68.72 107.00 136.44 98.70 85.44 72.36 68.03 88.93 32.25 154.50 126.09 36.56 36.02 18.39 24.44 19.21 26.22 94.78 5.06 46.87 14.02 54 IG39_SR3 SilentIntergenicRegion 0 22.29 111.49 55.11 91.87 98.66 91.16 64.20 67.56 59.25 85.86 26.16 137.99 106.54 50.15 26.63 16.93 23.76 13.96 31.38 83.01 3.69 36.93 13.10 55 IG39_AR11 ActiveIntergenicRegion 0 43.80 96.83 41.95 79.78 125.14 111.16 58.87 45.34 37.81 65.29 23.79 149.20 82.98 31.36 8.48 29.95 30.47 25.44 25.97 59.41 8.65 31.73 11.75 56 IG39_AR12 ActiveIntergenicRegion 0 52.35 79.54 28.32 48.42 146.37 113.13 84.48 48.54 44.30 44.51 20.24 124.76 112.70 39.44 23.71 20.14 22.40 14.76 24.83 52.78 1.48 25.43 8.09 57 IG39_AR13 ActiveIntergenicRegion 0 37.22 97.46 52.36 82.90 82.90 69.81 57.82 52.10 39.11 55.50 19.76 70.86 33.64 23.47 21.25 15.19 15.63 18.47 18.16 57.45 4.86 25.33 10.11 58 IG39_SR4 SilentIntergenicRegion 0 1.20 11.45 7.65 19.98 29.19 33.85 11.55 15.53 15.24 16.09 2.50 30.37 14.50 15.24 0.54 2.33 5.18 12.62 0.44 22.55 4.58 10.71 1.27 59 IG39_AR14 ActiveIntergenicRegion 0 6.83 29.60 17.54 31.94 39.28 36.98 11.09 15.21 29.75 21.22 7.16 24.62 11.38 11.30 2.04 10.54 2.93 10.83 8.23 16.50 2.30 13.35 9.70 60 IG39_AR15 ActiveIntergenicRegion 0 5.65 11.46 3.79 10.89 20.63 26.10 11.78 8.40 18.56 9.73 6.88 12.76 13.09 6.86 1.92 7.93 1.96 9.28 6.61 9.46 1.31 12.36 4.35 61 IG39_SR6 SilentIntergenicRegion 0 5.19 14.14 4.23 18.15 25.76 37.48 9.34 7.43 16.52 16.99 2.84 13.21 9.49 9.58 2.86 3.22 1.88 8.93 4.61 12.93 1.38 5.82 2.72 62 IG39_AR17 ActiveIntergenicRegion 0 9.58 34.75 7.06 31.79 43.36 62.18 12.32 12.54 30.98 21.60 5.66 23.34 11.31 10.32 2.81 5.50 1.65 13.26 9.16 23.32 2.07 7.96 2.87 63 IG39_SR7 SilentIntergenicRegion 0 21.41 58.43 6.34 38.07 59.34 85.37 19.06 10.83 35.30 31.70 11.20 13.34 10.67 14.13 5.74 9.16 5.12 9.93 11.34 19.35 2.83 6.26 8.61 64 IG39_AR18 ActiveIntergenicRegion 0 29.44 42.05 12.88 82.34 81.87 116.86 21.13 33.31 72.26 54.65 11.51 30.61 15.60 12.28 8.13 12.01 6.86 20.53 13.99 39.23 4.48 13.91 8.20 65 IG39_SR8 SilentIntergenicRegion 0 29.63 50.26 22.93 125.19 144.87 183.64 37.64 50.87 93.69 69.96 14.36 24.74 34.17 10.67 12.02 17.83 3.30 36.43 18.20 34.35 6.61 24.11 20.56 66 IG39_AR19 ActiveIntergenicRegion 0 43.50 88.23 25.41 96.41 130.98 109.46 22.20 36.30 54.94 54.83 6.68 23.03 19.21 11.89 12.67 7.87 3.27 9.73 13.14 21.98 2.23 10.60 5.97 67 IG39_SR9 SilentIntergenicRegion 0 9.94 28.80 2.53 31.47 73.63 95.38 5.58 14.40 48.87 23.03 6.26 1.26 10.09 4.11 2.53 3.12 0.33 2.34 8.67 8.81 2.12 1.48 2.94 68 IG39_AR20 ActiveIntergenicRegion 0 5.38 12.95 1.79 15.61 31.45 41.27 4.57 5.17 19.65 11.23 2.46 2.60 5.20 4.78 3.10 1.52 1.02 3.47 4.39 9.03 0.89 0.83 1.33 69 IG39_SR10 SilentIntergenicRegion 0 13.02 13.53 7.57 31.66 35.28 54.34 5.20 5.92 21.17 13.19 1.70 11.15 6.22 4.91 4.89 3.42 1.04 8.52 0.42 7.15 1.22 1.95 0.00 70 IG39_SR11 SilentIntergenicRegion 0 10.61 18.74 7.60 24.95 48.11 66.64 7.41 16.18 20.05 15.41 0.53 4.68 3.24 2.89 5.36 1.08 1.40 2.49 1.82 4.42 0.00 2.32 1.33 71 IG39_AR22 ActiveIntergenicRegion 0 14.36 43.91 5.84 36.98 43.78 38.16 3.43 18.22 30.49 17.62 1.10 5.38 3.45 1.69 4.10 0.00 1.04 1.16 2.02 10.07 0.00 2.12 0.00