Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CLDN15 Gene 0 46.57 9.61 88.82 58.18 44.44 26.35 24.18 29.43 21.42 62.94 39.08 12.15 11.33 43.71 44.59 38.25 30.32 39.89 42.68 33.80 25.05 22.04 26.72 2 401528 Transcript 0 46.54 8.39 95.89 58.39 47.31 29.98 24.52 28.76 21.87 64.93 41.89 17.48 9.14 45.69 44.54 43.43 28.68 43.43 49.63 38.26 20.81 24.51 27.73 3 308344 Transcript 0 20.10 1.62 12.25 11.09 9.66 17.63 13.63 7.95 7.01 23.61 11.05 2.56 12.61 23.07 15.07 10.04 7.53 8.83 18.96 9.19 16.15 12.10 8.38 4 305064 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 414035 Transcript 0 0.00 0.00 1.33 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 433422 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 412417 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 463331 Transcript 0 39.85 19.06 8.17 9.83 18.26 10.51 20.50 6.31 5.42 6.62 3.40 6.37 14.88 12.26 20.52 18.71 7.42 12.07 18.55 11.90 3.19 9.54 15.87 9 433833 Transcript 0 0.00 0.00 4.39 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.06 0.00 2.35 0.00 0.00 0.00 0.00 10 ER1a ExonRegion 0 78.78 16.78 138.02 89.72 77.89 46.67 38.76 50.98 38.16 110.25 68.57 23.26 18.28 72.67 69.06 64.72 48.20 75.99 80.91 58.95 39.02 39.96 47.86 11 E1_Ab NovelBoundary 0 5.63 2.63 50.03 24.34 6.71 10.16 18.50 3.24 15.36 23.67 22.32 6.30 0.00 15.54 9.39 24.10 13.84 9.33 0.00 5.82 8.71 5.57 10.76 12 E1_Da NovelBoundary 0 7.56 3.22 6.27 5.79 0.00 0.00 4.28 10.06 5.03 9.54 2.47 6.30 6.66 5.47 5.19 3.67 4.02 0.00 7.15 2.62 8.96 0.00 0.00 13 E1a_E1d KnownJunction 0 14.30 0.00 53.75 27.07 16.72 13.29 10.29 6.53 5.58 19.61 15.21 11.70 0.00 18.72 20.03 22.13 9.16 10.86 18.35 17.58 2.59 9.06 7.60 14 ER1b ExonRegion 0 15.08 4.07 45.49 24.02 19.06 16.05 11.58 6.48 7.72 20.21 22.23 4.33 2.93 29.03 16.68 21.18 6.60 14.78 21.50 15.96 7.71 8.33 8.81 15 ER1c ExonRegion 0 20.10 1.62 12.25 11.09 9.66 17.63 13.63 7.95 7.01 23.61 11.05 2.56 12.61 23.07 15.07 10.04 7.53 8.83 18.96 9.19 16.15 12.10 8.38 16 E1_Ac KnownBoundary 0 23.12 6.45 11.00 24.27 11.38 18.46 8.39 10.72 8.01 25.81 13.06 0.00 0.00 4.65 25.96 19.14 8.79 11.73 21.65 8.95 3.15 10.41 16.48 17 E1_Ad KnownBoundary 0 16.15 6.71 23.95 17.15 23.17 15.50 40.85 14.05 14.61 20.36 17.90 0.00 0.00 19.31 34.37 3.59 4.49 19.90 28.42 8.56 28.36 11.08 7.51 18 ER1d ExonRegion 0 30.40 8.50 32.08 32.59 25.05 21.67 34.90 20.27 18.53 38.16 23.19 4.72 0.00 22.00 44.57 17.29 10.50 22.84 41.70 15.86 23.24 16.48 18.15 19 ER1e ExonRegion 0 53.11 5.36 82.70 50.80 80.66 44.18 49.40 28.47 21.31 69.00 39.54 15.90 11.94 49.49 40.25 33.56 19.27 34.57 48.94 38.92 36.86 19.55 19.54 20 E1_Ae KnownBoundary 0 19.11 6.64 39.59 21.31 52.97 31.74 26.28 6.37 7.06 35.22 11.63 0.00 7.95 13.77 0.00 9.66 3.74 7.59 24.66 16.62 7.04 10.84 15.79 21 E1_Af KnownBoundary 0 0.00 0.00 1.74 4.03 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 22 E1_Ag KnownBoundary 0 3.78 0.00 5.32 1.93 21.65 0.00 9.01 7.48 0.00 0.00 5.37 0.00 0.00 0.00 0.00 4.36 0.00 2.49 4.80 3.26 0.00 0.00 4.35 23 E1_Ah KnownBoundary 0 41.56 0.00 82.11 33.36 69.44 38.56 28.22 15.48 13.72 44.51 29.22 18.91 0.00 28.25 24.85 11.36 30.29 23.17 12.52 34.00 20.14 24.19 29.02 24 ER1f ExonRegion 0 69.85 4.07 107.83 44.63 133.12 66.02 49.65 25.49 17.60 74.26 39.62 25.98 9.38 60.50 39.17 23.78 23.93 36.49 49.37 47.34 22.59 22.92 34.51 25 ER1g ExonRegion 0 71.54 4.07 106.85 44.70 133.79 64.18 44.49 23.85 18.77 75.01 37.11 30.31 9.38 61.07 42.94 18.43 22.45 34.74 47.78 46.38 22.04 22.09 40.53 26 ER1h ExonRegion 0 68.58 5.08 106.97 46.47 135.66 57.03 42.23 24.20 18.40 76.27 39.04 29.01 8.44 56.52 49.61 20.21 30.04 31.41 41.41 40.64 23.80 21.67 35.83 27 ER1i ExonRegion 0 47.20 9.39 155.47 93.06 48.75 34.32 33.35 37.08 36.88 96.93 58.06 14.27 7.77 60.33 62.25 53.52 46.35 68.00 53.15 59.50 41.35 34.37 38.34 28 E1_Ai KnownBoundary 0 149.29 11.84 215.90 138.04 168.08 95.51 85.45 68.72 51.76 141.16 72.44 12.60 13.64 77.58 122.38 99.46 80.13 76.19 82.54 114.03 88.84 39.80 47.12 29 ER1j ExonRegion 0 57.73 10.06 155.95 117.23 88.47 47.88 48.18 44.82 38.27 99.91 58.18 12.60 22.95 58.00 65.23 47.18 41.76 41.90 41.69 52.70 37.50 23.14 31.70 30 E1_Db NovelBoundary 0 3.26 2.83 10.05 10.02 4.33 10.56 4.24 2.38 6.51 7.87 2.21 0.00 5.84 11.54 4.45 0.00 8.32 14.43 27.58 5.37 10.50 8.82 6.57 31 E1b_E2a KnownJunction 0 7.26 5.92 14.46 17.11 0.00 8.46 12.81 2.34 11.05 33.44 27.16 5.70 0.00 11.54 5.81 16.49 4.77 3.52 3.86 0.00 4.94 0.00 7.77 32 E1b_E3a KnownJunction 0 72.24 5.59 134.35 131.15 59.17 18.34 24.55 33.15 23.93 48.59 19.95 31.66 25.81 40.97 35.35 28.20 39.36 40.50 44.52 29.02 11.61 42.19 44.56 33 E1b_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E1b_E4a KnownJunction 0 0.00 0.00 1.33 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 Ix Intron 0 0.50 0.00 9.49 2.40 6.32 3.90 8.75 2.43 5.21 7.67 4.56 0.00 0.91 7.53 13.10 11.23 3.90 6.94 6.02 11.55 5.20 3.44 4.16 36 Ix_AR1 ActiveIntronRegion 0 0.00 0.00 2.54 4.12 2.68 2.17 4.46 0.64 0.00 3.63 0.00 0.00 0.00 7.86 13.16 5.74 0.00 1.55 2.37 9.35 0.82 1.94 4.23 37 Ix_SR1 SilentIntronRegion 0 0.63 0.00 11.34 1.99 7.29 4.38 9.93 2.91 6.59 8.77 5.76 0.00 1.15 7.54 13.23 12.74 4.92 8.37 7.00 12.23 6.37 3.86 4.19 38 E2_Aa NovelBoundary 0 10.96 6.71 19.63 12.99 24.62 5.22 28.48 11.09 7.55 6.42 7.95 6.60 12.66 12.13 13.72 13.07 9.07 8.54 12.89 0.00 2.72 15.31 0.00 39 ER2a ExonRegion 0 4.29 3.41 12.90 9.80 2.89 5.00 4.82 2.40 4.43 16.12 7.39 1.52 1.21 7.76 4.23 7.83 4.64 3.26 1.98 5.20 3.27 0.97 0.71 40 E2_Da NovelBoundary 0 0.00 0.00 24.04 18.05 16.21 5.34 12.28 13.80 3.79 11.71 7.16 0.00 6.82 13.89 19.53 11.45 4.11 9.70 0.00 8.37 2.66 10.41 4.27 41 E2a_E3a KnownJunction 0 7.33 9.27 18.42 11.62 0.00 0.00 8.52 1.97 2.95 19.99 4.63 0.00 0.00 14.95 21.39 19.65 4.39 1.78 0.00 2.75 8.15 5.57 0.00 42 E3_Aa NovelBoundary 0 20.45 0.00 36.52 24.91 16.47 5.51 5.61 12.94 10.47 20.12 2.68 5.70 0.00 9.89 13.35 8.29 4.21 10.40 17.88 5.82 5.62 0.00 0.00 43 ER3a ExonRegion 0 36.43 10.08 108.69 92.52 26.18 15.38 12.82 29.51 18.44 55.05 33.19 8.66 9.78 31.00 37.76 30.49 28.67 35.77 40.64 28.78 27.07 24.97 28.95 44 E3_Ab KnownBoundary 0 60.53 12.30 98.73 79.41 41.17 13.12 14.22 32.69 25.14 56.41 37.59 17.56 6.33 42.03 30.53 31.53 50.12 33.12 8.38 36.37 26.75 10.96 19.38 45 ER3b ExonRegion 0 30.72 0.00 67.61 48.21 14.30 14.30 9.46 29.04 12.17 45.52 30.10 7.17 0.94 34.76 19.98 13.93 29.61 21.96 5.01 22.13 21.60 6.55 9.15 46 E3_Da KnownBoundary 0 45.64 8.88 56.50 48.94 11.88 21.12 23.63 29.33 9.66 42.36 26.95 0.00 0.00 35.79 15.70 16.49 27.68 21.39 9.04 24.16 20.57 5.63 10.67 47 ER3c ExonRegion 0 22.22 5.86 55.41 31.07 15.70 15.65 12.47 16.59 10.99 37.69 13.69 0.00 3.28 22.71 31.43 12.88 18.26 14.35 11.20 19.89 20.90 5.07 4.65 48 E3_Db KnownBoundary 0 6.67 8.49 19.96 17.75 16.13 9.99 16.12 2.38 2.86 7.33 17.58 0.00 5.84 7.24 17.80 16.06 7.76 16.83 8.56 9.65 8.96 6.12 4.01 49 E3b_E3c KnownJunction 0 0.00 0.00 8.78 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.11 0.00 4.71 0.00 0.00 0.00 0.00 50 E3b_E4a KnownJunction 0 21.41 11.58 60.97 48.48 52.89 28.79 12.19 24.36 19.91 42.12 24.90 0.00 0.00 25.78 13.97 24.69 17.30 26.49 16.57 30.68 22.80 6.00 10.76 51 ER3d ExonRegion 0 11.16 3.20 2.44 2.84 3.57 6.62 8.54 0.00 0.18 0.92 0.17 0.00 0.00 2.51 2.40 2.48 0.14 3.50 1.18 0.85 0.98 0.69 0.00 52 E3_Ac KnownBoundary 0 18.30 3.16 5.94 1.27 20.97 10.85 19.56 0.00 0.00 1.67 5.00 5.70 0.00 0.00 0.00 4.27 0.00 9.58 12.14 0.00 0.00 0.00 3.24 53 ER3e ExonRegion 0 3.04 0.43 7.53 3.07 2.05 0.51 1.19 0.55 0.85 0.85 1.22 2.87 1.60 2.33 6.02 1.90 3.22 0.62 2.91 1.80 0.93 1.75 1.23 54 E3_Dc KnownBoundary 0 74.75 48.94 499.72 627.33 58.91 32.59 96.54 460.11 477.71 443.38 17.16 24.31 21.75 7.42 25.09 55.46 62.65 741.73 35.39 90.25 20.02 24.00 57.96 55 E3c_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 ER3f ExonRegion 0 68.54 34.92 13.90 16.83 32.96 14.39 32.46 12.61 10.65 12.32 6.64 12.74 29.76 22.00 38.64 34.95 14.70 20.65 35.93 22.95 5.40 18.39 31.74 57 E3_Dd NovelBoundary 0 480.60 453.01 172.23 173.77 364.01 231.06 409.43 195.76 170.74 164.91 126.24 210.22 339.91 201.19 152.54 337.77 261.80 196.65 321.89 218.79 217.02 129.63 303.89 58 Ix Intron 0 56.46 5.90 75.21 40.70 38.09 9.63 26.72 16.38 10.94 33.31 22.17 3.56 7.09 19.68 19.20 30.40 16.88 17.13 14.97 17.06 10.65 11.23 15.02 59 Ix_AR2 ActiveIntronRegion 0 83.89 9.49 73.76 46.89 56.75 14.72 35.45 16.98 9.81 31.74 16.54 7.29 8.05 22.47 21.21 34.37 17.31 18.10 18.63 20.83 10.16 9.83 19.22 60 Ix_AR1 ActiveIntronRegion 0 38.55 3.46 78.91 37.58 25.83 6.31 21.32 16.54 12.13 35.68 27.14 0.96 6.70 18.46 18.45 28.64 17.22 17.05 12.88 14.93 11.42 12.65 12.51 61 E4_Aa NovelBoundary 0 29.34 0.00 94.59 30.23 31.15 5.39 34.05 16.18 21.53 21.41 25.11 6.30 5.84 29.25 19.53 7.60 17.86 18.32 0.00 14.89 17.30 6.25 11.69 62 ER4a ExonRegion 0 57.35 11.43 83.00 82.49 45.94 37.86 23.67 25.57 14.72 56.25 49.67 10.03 13.84 39.06 50.60 53.57 29.83 45.18 50.46 31.81 27.47 19.18 38.07 63 E4_Da NovelBoundary 0 14.60 0.00 12.51 8.59 11.12 22.32 6.58 8.21 6.25 12.68 0.00 0.00 6.82 4.59 0.00 8.37 4.49 4.19 4.05 0.00 6.12 0.00 0.00 64 E4a_E5a KnownJunction 0 37.49 3.35 86.81 72.09 38.54 16.98 20.80 26.04 13.19 49.08 38.48 6.90 13.47 40.73 68.85 47.42 20.10 52.98 23.34 29.21 25.88 14.63 33.12 65 ER5a ExonRegion 0 49.28 3.39 89.19 47.50 20.79 11.66 11.13 33.34 10.69 49.81 34.03 3.52 6.21 41.12 49.30 35.36 26.18 34.59 19.52 26.93 23.20 12.64 16.69 66 E5a_E6a KnownJunction 0 49.49 3.22 85.39 61.50 3.99 5.56 3.31 27.68 16.00 58.67 25.53 5.40 6.17 24.60 23.36 29.31 21.60 33.49 12.99 23.52 19.15 2.94 40.21 67 ER6a ExonRegion 0 38.48 7.55 86.61 39.91 17.77 8.91 4.35 30.12 10.54 46.00 28.51 2.94 9.21 37.76 49.32 38.64 28.06 14.78 14.45 22.34 17.87 9.60 30.83 68 ER6b ExonRegion 0 40.77 8.87 108.67 64.22 46.94 19.93 20.48 47.88 16.96 62.90 40.33 7.77 7.80 61.13 58.16 39.21 55.00 21.28 40.64 25.28 22.49 23.75 26.78 69 E6_Db KnownBoundary 0 62.38 3.35 108.48 71.39 66.81 32.14 58.03 61.57 20.31 65.57 29.43 12.00 6.17 34.38 51.80 59.47 29.83 40.62 54.87 17.96 34.29 21.31 19.55 70 ER6c ExonRegion 0 30.47 2.16 64.88 41.02 32.03 8.35 10.68 17.90 10.26 35.82 24.93 8.55 8.36 32.02 35.90 27.71 24.71 14.23 27.47 11.76 18.38 11.76 12.82 71 ER6d ExonRegion 0 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00