Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RBM28 Gene 0 70.79 95.88 124.65 186.13 96.86 79.32 122.40 83.67 53.80 92.92 170.29 142.27 120.26 147.03 120.04 121.04 133.53 105.66 121.26 109.30 59.92 61.36 76.71 2 459726 Transcript 0 0.71 1.02 0.30 0.01 1.89 0.91 8.83 1.53 0.00 0.29 3.68 5.60 2.57 2.84 2.59 6.04 2.96 3.26 2.08 2.18 1.59 2.05 0.49 3 223073 Transcript 1 43.97 170.16 100.93 170.37 94.54 29.21 106.29 63.67 37.28 49.96 91.16 155.54 235.92 117.09 69.11 78.73 83.65 35.13 57.30 73.04 33.55 40.19 47.27 4 478061 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 415472 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 6 488249 Transcript 1 33.45 50.75 46.38 138.10 45.62 26.18 58.45 41.14 29.72 36.83 51.93 77.38 91.41 42.44 30.44 47.63 40.21 25.99 53.06 46.14 24.92 38.84 49.56 7 487602 Transcript 0 10.15 6.05 5.71 9.06 8.40 0.00 4.33 4.68 1.48 6.15 2.68 0.00 6.01 0.00 15.20 3.93 0.00 15.67 26.64 0.00 0.00 0.00 0.00 8 481788 Transcript 0 23.81 29.13 49.32 79.82 36.12 39.59 46.34 29.38 18.26 38.99 62.24 23.81 26.37 55.98 50.82 53.50 44.56 57.97 46.29 47.55 25.34 16.67 31.54 9 495327 Transcript 0 2.97 12.44 7.30 13.66 12.21 4.24 21.49 6.79 1.69 3.23 1.62 0.00 0.11 0.93 2.47 12.09 1.29 8.60 17.83 11.27 3.37 3.52 0.00 10 ER1a ExonRegion 0 11.55 6.33 4.62 2.34 18.65 60.88 44.11 3.46 2.19 1.38 6.74 0.00 0.00 36.29 25.70 17.49 19.43 5.33 9.56 14.35 19.01 3.51 18.21 11 E1_Ab KnownBoundary 0 10.82 0.00 0.00 0.00 4.16 0.00 6.09 2.34 1.74 1.53 0.00 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 6.05 2.76 0.00 12 E1_Ac KnownBoundary 0 23.26 14.14 16.47 16.05 36.84 64.11 82.89 14.25 2.78 6.31 30.53 0.00 0.00 32.26 28.18 16.24 36.47 23.17 27.58 14.89 32.99 11.45 52.41 13 ER1b ExonRegion 0 28.04 17.29 11.33 7.50 46.16 140.74 109.89 6.91 4.94 4.59 21.26 0.00 0.00 96.64 71.08 37.89 51.16 18.94 35.04 30.32 42.97 12.50 56.53 14 ER1c ExonRegion 1 19.58 38.23 35.69 37.28 35.90 70.56 62.75 21.02 16.03 25.20 65.36 8.64 14.53 76.40 39.90 48.90 81.35 48.73 44.09 52.75 49.47 18.61 36.98 15 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 3.25 0.00 5.14 0.00 0.00 3.15 0.00 0.00 16 E1a_E3a KnownJunction 0 13.56 58.74 73.33 106.21 8.23 12.04 23.89 40.25 29.83 54.80 147.14 63.02 66.23 173.41 110.02 113.99 107.34 81.58 86.97 113.71 62.89 59.03 83.14 17 E1a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 18 ER2a ExonRegion 0 2.12 3.05 0.91 0.03 5.67 2.73 22.25 2.80 0.00 0.88 8.36 16.81 7.72 6.05 7.77 6.15 4.11 2.83 6.25 3.59 1.62 6.15 1.47 19 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 4.24 1.81 0.00 0.00 0.00 0.00 0.00 2.47 0.00 8.72 4.77 1.82 0.00 2.94 0.00 0.00 0.00 20 ER3a ExonRegion 0 38.60 148.45 80.93 125.97 80.47 115.76 96.47 66.71 33.57 72.73 136.09 78.45 92.03 125.70 69.19 102.64 111.86 94.08 85.66 101.63 55.99 43.92 64.98 21 E3a_E4a KnownJunction 0 158.69 234.50 93.55 156.92 94.74 122.43 154.22 100.22 52.31 96.89 126.19 161.75 172.07 139.56 117.44 111.42 99.77 65.54 112.19 100.73 48.06 52.72 43.96 22 ER4a ExonRegion 1 122.27 268.24 98.47 203.80 89.57 45.36 109.78 90.59 49.94 106.82 176.73 198.79 236.97 159.16 97.30 123.42 128.84 62.38 95.19 127.46 54.37 71.98 51.59 23 E4a_E5a KnownJunction 1 136.02 268.11 114.31 258.38 144.31 37.48 135.76 106.63 52.34 113.14 153.83 271.14 294.95 134.91 122.01 168.16 118.65 49.08 80.00 125.28 41.39 58.23 81.78 24 ER5a ExonRegion 0 92.43 211.06 105.37 233.88 120.73 51.76 130.64 93.65 60.76 103.12 186.45 237.44 234.25 180.49 81.69 122.25 126.13 61.78 91.37 119.65 53.44 64.67 68.39 25 E5a_E6a KnownJunction 1 80.76 296.92 122.70 236.60 112.05 53.09 103.69 90.90 68.29 104.57 224.58 241.13 308.26 264.00 162.19 131.25 185.88 64.63 151.35 142.22 60.42 76.73 89.55 26 E5a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER6a ExonRegion 1 65.24 246.35 109.89 252.26 87.96 38.98 86.02 80.83 65.93 89.49 159.97 246.50 297.48 208.12 123.14 124.59 130.99 56.90 115.28 110.54 68.28 61.08 65.82 28 E6_Da NovelBoundary 1 88.76 306.00 151.38 307.05 133.28 33.45 137.74 95.50 72.57 92.22 151.09 272.04 330.17 239.69 87.03 162.52 132.12 51.44 98.07 134.61 75.12 55.29 75.72 29 E6b_E7b KnownJunction 1 58.68 260.02 148.31 250.92 138.20 42.19 163.18 93.16 48.55 73.57 128.40 204.37 333.91 151.98 102.48 114.24 133.24 51.69 77.74 96.96 41.51 55.42 70.94 30 ER6b ExonRegion 1 61.52 236.71 131.40 245.73 123.00 27.93 125.73 89.48 59.20 73.21 141.81 252.26 346.44 190.78 93.90 118.98 116.19 46.32 76.77 111.21 59.13 52.50 66.37 31 ER7a ExonRegion 0 18.34 74.56 48.20 76.78 40.14 9.17 42.81 30.54 19.76 20.64 39.95 54.84 101.62 48.18 36.75 36.66 31.91 12.93 25.48 32.62 20.57 17.36 24.47 32 ER7b ExonRegion 1 43.24 183.60 147.28 245.94 109.58 36.98 115.72 97.74 63.78 76.35 117.22 144.21 197.20 135.65 69.91 89.02 111.52 40.08 78.04 94.02 46.91 48.02 44.89 33 E7a_E8a KnownJunction 1 94.24 227.66 219.36 341.12 161.88 100.91 169.19 115.75 73.38 106.70 181.05 225.22 369.46 181.94 130.17 80.83 169.89 62.64 103.81 188.81 68.76 75.07 56.34 34 ER7c ExonRegion 1 64.59 190.46 177.85 283.76 124.47 74.30 133.08 107.52 71.81 92.58 172.16 203.48 311.81 189.35 116.55 90.09 167.21 53.84 99.30 147.25 61.55 69.12 44.96 35 ER8a ExonRegion 0 112.55 142.74 168.43 269.20 151.82 92.40 186.47 93.21 64.76 93.46 242.41 228.64 300.47 218.10 129.05 142.90 202.43 83.91 166.08 163.84 50.25 91.60 86.75 36 E8_Da KnownBoundary 1 51.19 28.09 72.35 208.66 44.48 46.79 54.01 50.15 42.39 51.06 49.43 151.55 74.51 23.60 41.91 31.87 57.32 40.87 43.39 50.43 21.75 47.64 54.97 37 E8a_E8b KnownJunction 0 98.02 118.40 128.65 93.73 177.67 67.97 144.01 48.39 39.50 62.67 218.06 232.28 218.17 217.02 112.86 130.05 203.93 68.07 166.12 117.86 38.12 77.46 51.13 38 ER8b ExonRegion 0 48.55 26.94 44.57 199.43 51.11 43.19 74.09 51.74 39.68 53.02 63.91 99.91 81.21 36.70 24.13 58.61 48.51 39.04 80.64 59.66 29.26 60.32 74.66 39 E8_Ab KnownBoundary 1 67.35 38.61 22.38 175.04 35.23 45.94 61.70 49.78 31.71 45.88 33.80 87.78 46.10 34.49 33.75 76.90 34.32 24.37 57.51 52.22 18.90 50.76 49.77 40 ER8c ExonRegion 0 81.68 90.85 137.29 225.84 121.20 83.65 147.08 89.36 64.99 109.41 275.53 271.54 216.84 203.78 122.05 167.02 210.38 104.13 190.90 131.45 57.40 67.32 90.39 41 E8d_E9a KnownJunction 0 83.05 109.78 185.15 262.54 153.48 101.76 164.90 104.66 82.18 129.93 256.80 225.52 139.28 179.88 155.63 184.48 216.92 98.82 176.10 131.09 50.41 96.50 90.83 42 ER8d ExonRegion 0 95.24 114.90 154.40 238.50 140.48 86.19 146.30 100.25 76.58 122.72 277.37 242.45 121.94 181.90 145.06 197.65 226.11 109.94 191.12 123.40 59.50 94.80 82.23 43 ER8e ExonRegion 0 96.30 115.91 151.95 237.14 137.80 88.02 148.28 98.52 77.19 125.01 284.14 231.63 121.94 183.53 153.77 202.10 240.97 110.86 189.53 123.40 63.91 94.80 93.97 44 ER9a ExonRegion 0 82.81 108.28 153.05 236.66 157.10 128.82 205.78 97.48 70.94 128.45 330.68 378.56 166.59 243.82 146.93 216.35 274.61 133.85 205.26 148.35 63.85 98.47 123.94 45 E9a_E10a KnownJunction 1 94.16 100.05 171.61 242.46 198.56 65.59 186.68 94.63 73.61 127.08 278.44 450.15 237.48 202.96 131.53 209.00 206.92 131.86 187.02 164.20 71.72 66.01 105.76 46 ER10a ExonRegion 1 75.77 82.34 171.14 231.39 132.01 81.45 167.47 121.98 70.33 116.38 253.82 350.49 145.18 208.63 139.63 189.27 212.64 154.81 182.93 127.02 60.90 74.70 109.06 47 E10a_E11a KnownJunction 0 66.16 92.75 128.94 179.76 127.33 54.46 157.22 95.78 55.58 112.98 257.43 260.03 122.07 157.34 163.30 147.74 251.89 161.21 93.56 135.25 59.68 52.42 94.07 48 E10a_E12a KnownJunction 0 10.15 6.05 5.71 9.06 8.40 0.00 4.33 4.68 1.48 6.15 2.68 0.00 6.01 0.00 15.20 3.93 0.00 15.67 26.64 0.00 0.00 0.00 0.00 49 ER11a ExonRegion 1 87.46 76.92 120.17 157.78 91.34 62.65 135.24 86.40 48.85 92.87 257.23 270.01 99.31 197.75 119.23 134.03 214.47 133.29 125.35 114.03 86.27 57.86 98.89 50 E11_Da NovelBoundary 1 10.00 32.43 14.31 42.65 34.13 24.30 21.64 21.48 19.33 16.87 10.11 52.07 57.14 25.90 9.77 7.69 4.77 10.74 18.26 15.40 5.07 16.53 10.93 51 E11a_E12a KnownJunction 1 51.27 68.41 105.56 137.98 88.12 67.75 117.96 91.88 41.41 73.55 163.99 329.66 110.22 216.02 112.00 160.64 128.47 125.40 101.37 104.57 69.56 52.72 99.87 52 I11 Intron 0 12.19 14.02 11.07 39.40 15.00 7.78 27.99 17.95 10.88 14.25 10.25 30.94 31.60 10.94 9.16 8.78 7.25 6.27 14.24 10.16 6.68 13.74 11.13 53 I11_SR1 SilentIntronRegion 0 7.41 10.17 2.74 11.17 10.70 7.34 19.86 15.45 4.60 12.82 5.80 24.07 31.04 10.56 14.93 5.94 8.25 5.98 15.93 8.51 3.31 3.13 13.19 54 I11_AR1 ActiveIntronRegion 0 14.00 15.79 13.48 47.70 16.93 8.44 31.60 19.75 12.88 15.57 11.86 34.52 34.03 11.81 8.72 9.97 7.59 6.78 14.96 11.22 7.81 16.78 11.54 55 E12_Aa NovelBoundary 0 49.05 40.85 16.08 34.19 11.88 10.73 36.70 24.48 14.99 17.00 2.16 6.30 19.32 15.07 0.00 8.72 13.74 8.58 13.18 20.77 18.66 5.57 8.62 56 ER12a ExonRegion 0 71.63 95.44 138.51 177.70 89.81 70.72 119.11 97.87 44.18 103.19 179.86 177.48 85.49 156.87 144.72 132.39 140.77 142.22 116.36 129.35 76.72 51.90 76.40 57 E12a_E13a KnownJunction 0 101.94 147.21 163.92 239.50 145.76 71.83 161.90 118.21 56.77 114.81 229.48 177.66 106.49 194.95 198.41 149.11 106.97 185.42 128.10 144.32 87.48 65.34 79.39 58 ER13a ExonRegion 0 91.78 110.92 158.74 223.76 114.17 85.52 140.10 115.96 48.77 115.14 214.32 110.07 100.91 166.60 148.58 136.09 118.33 160.75 126.26 141.65 100.50 68.44 81.87 59 E13_Da KnownBoundary 0 123.43 112.02 188.23 270.43 132.68 110.33 203.06 134.35 48.03 125.50 227.90 81.48 112.33 150.69 153.16 174.74 138.38 133.40 135.91 175.77 113.36 80.95 94.24 60 ER13b ExonRegion 0 98.02 96.79 184.72 276.07 133.95 117.42 172.78 124.77 57.78 133.51 209.72 91.19 108.60 170.13 166.91 173.13 147.82 185.01 140.65 154.72 104.68 63.68 97.37 61 E13b_E14a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.34 0.00 0.00 62 E13b_E14b KnownJunction 0 105.35 116.82 206.35 338.55 168.34 136.68 216.04 129.10 76.74 157.52 199.21 103.38 114.77 218.02 178.63 184.05 148.48 216.39 180.05 169.76 76.48 62.58 109.52 63 ER14a ExonRegion 0 47.62 54.91 98.64 151.28 72.25 77.02 92.68 58.77 33.97 77.99 112.11 47.62 46.90 107.19 97.19 107.00 89.12 111.79 89.19 92.55 50.69 33.34 58.73 64 ER14b ExonRegion 0 109.52 102.44 206.51 274.54 125.51 121.14 146.94 116.01 80.83 149.29 255.73 117.64 108.76 188.33 173.65 187.54 178.06 203.81 170.26 165.20 105.82 90.94 102.34 65 E14a_E15a KnownJunction 0 79.27 166.09 159.69 215.69 211.46 112.49 162.83 114.80 71.01 141.05 219.37 96.48 67.04 192.71 157.86 214.99 189.53 138.79 158.22 116.01 75.00 76.24 86.30 66 E14a_E17a KnownJunction 0 0.00 3.35 0.00 8.36 0.00 2.16 0.00 0.00 2.55 0.00 12.37 0.00 5.84 4.77 4.45 0.00 0.00 4.15 3.39 2.56 0.00 0.00 4.35 67 ER15a ExonRegion 0 96.94 100.13 203.28 258.86 107.83 101.63 134.35 118.92 76.44 146.28 250.75 141.95 136.82 194.52 176.47 184.45 204.50 196.61 200.32 135.97 92.22 82.84 130.25 68 E15a_E16a KnownJunction 0 128.91 104.59 250.82 298.36 138.20 114.82 146.84 179.66 72.83 172.61 286.44 125.74 193.33 251.34 237.10 193.20 230.86 165.15 250.92 128.73 104.09 107.46 107.98 69 ER16a ExonRegion 0 100.18 77.47 184.10 231.38 156.37 128.17 145.37 117.12 61.51 141.90 275.43 151.53 92.42 219.62 200.46 206.38 225.43 181.50 185.69 129.67 95.52 71.28 112.61 70 E16a_E17a KnownJunction 1 148.62 88.01 175.19 221.65 178.10 103.46 165.17 107.37 56.34 135.57 218.74 189.21 55.03 207.84 247.48 194.91 157.92 176.43 164.33 120.10 90.01 79.60 141.53 71 ER17a ExonRegion 0 100.28 84.23 199.12 256.74 146.36 111.57 150.24 135.75 80.92 148.59 203.96 190.76 129.44 175.27 173.49 189.21 167.22 211.23 166.59 135.74 103.79 66.30 127.86 72 E17_Ab KnownBoundary 0 166.10 124.06 251.32 345.44 230.31 173.31 223.02 160.39 111.75 167.48 228.01 191.91 206.80 219.14 252.18 250.19 206.73 251.25 273.70 189.45 107.74 75.19 145.20 73 ER17b ExonRegion 0 95.71 87.41 163.01 203.43 94.89 114.94 133.80 94.26 72.00 115.12 200.71 118.86 118.68 194.96 204.31 167.98 177.37 191.59 169.89 140.64 79.21 67.43 108.61 74 E17a_E18a KnownJunction 0 74.31 103.14 177.94 213.06 100.25 91.65 167.73 72.08 59.84 97.16 169.99 90.18 68.66 210.49 170.72 63.83 134.64 120.80 97.13 100.86 45.84 62.46 91.68 75 ER18a ExonRegion 0 86.29 90.39 170.06 233.52 130.71 101.81 159.31 112.21 65.84 110.49 190.84 99.97 88.83 161.44 199.78 118.56 147.98 141.89 122.57 133.30 76.40 69.36 103.75 76 E18_Da KnownBoundary 0 3.78 17.69 17.21 13.65 10.27 19.08 31.09 10.80 4.69 7.41 2.58 0.00 0.00 0.00 0.00 0.00 8.79 13.80 4.61 18.02 3.15 0.00 0.00 77 E18a_E19a KnownJunction 0 120.91 42.76 157.80 276.59 112.48 129.07 110.41 102.48 67.10 133.07 192.31 134.29 108.11 206.02 232.40 199.43 149.98 139.20 164.24 95.94 80.00 79.30 115.15 78 ER18b ExonRegion 0 2.97 12.44 7.30 13.66 12.21 4.24 21.49 6.79 1.69 3.23 1.62 0.00 0.11 0.93 2.47 12.09 1.29 8.60 17.83 11.27 3.37 3.52 0.00 79 ER19a ExonRegion 0 64.36 69.95 136.79 183.82 103.60 79.22 135.08 95.42 63.68 107.43 157.42 99.89 60.96 136.28 156.90 108.82 94.86 94.24 121.59 101.45 57.41 73.70 72.38 80 E19_Da KnownBoundary 1 66.83 137.61 108.57 153.73 104.84 43.55 153.11 76.03 61.63 86.95 47.06 51.47 88.31 33.85 100.25 40.25 25.71 37.43 62.59 130.01 2.66 33.74 32.18 81 ER19b ExonRegion 1 55.72 69.12 75.25 101.92 76.40 57.84 117.83 65.12 48.60 60.83 28.29 79.03 89.22 32.38 57.15 31.62 29.23 36.00 54.15 70.90 5.10 37.35 26.64 82 ER19c ExonRegion 1 11.72 13.77 23.09 14.47 22.44 17.49 29.94 8.38 4.09 3.09 3.27 9.99 27.42 8.50 10.94 2.97 1.52 7.39 17.40 10.97 0.00 12.66 4.52 83 IG7 Intergenic 0 33.06 69.00 49.28 102.93 89.46 67.48 108.88 66.14 44.33 57.75 23.34 47.64 36.10 24.76 27.09 36.63 29.69 60.04 83.04 73.55 24.74 28.92 34.43 84 IG7_AR2 ActiveIntergenicRegion 0 3.93 6.39 4.55 4.09 5.35 3.67 7.94 6.91 4.06 4.59 2.21 21.65 13.40 0.00 3.32 0.00 8.96 9.50 10.47 4.26 0.63 5.06 2.94 85 IG7_SR1 SilentIntergenicRegion 0 39.60 60.50 43.26 91.58 76.94 54.02 99.33 56.81 41.74 50.62 20.45 38.80 31.30 24.55 28.03 35.00 27.55 73.46 89.91 78.56 28.80 22.91 38.19 86 IG7_AR1 ActiveIntergenicRegion 0 28.22 76.44 54.56 113.03 100.33 78.86 117.58 74.19 46.84 63.99 25.88 54.96 40.19 25.20 26.63 38.33 31.64 50.03 78.43 70.36 21.80 33.96 31.81