Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MOSPD3 Gene 0 43.53 37.49 111.20 48.79 32.65 92.28 30.71 54.95 45.30 45.40 18.39 6.52 7.10 38.05 29.70 28.28 28.87 83.75 78.78 47.60 87.51 50.36 43.73 2 223054 Transcript 0 2.08 1.68 1.27 0.00 6.95 12.42 5.60 0.30 1.47 2.11 1.70 0.00 0.00 0.00 0.00 0.36 2.26 3.60 5.14 2.13 3.67 1.86 2.32 3 462372 Transcript 0 3.78 2.76 9.08 4.59 0.00 2.90 1.90 12.73 1.33 7.31 0.00 0.00 0.00 0.00 0.00 4.10 0.00 4.27 0.00 0.00 3.15 0.00 0.00 4 490309 Transcript 0 4.53 3.71 11.24 4.81 4.45 8.13 3.94 9.38 3.07 7.15 1.07 1.03 0.00 3.16 1.24 1.99 2.78 10.25 9.12 3.81 3.26 0.33 5.29 5 493970 Transcript 0 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 1.47 6 379527 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 393950 Transcript 0 5.63 4.07 8.89 1.94 0.23 11.43 2.00 1.40 3.99 1.00 0.12 0.00 0.00 1.04 4.20 0.25 1.40 2.71 1.42 1.49 6.94 6.07 8.56 8 424091 Transcript 0 13.78 0.00 4.82 1.93 0.00 2.61 1.63 4.48 1.27 0.00 0.00 0.00 0.00 4.59 0.00 0.00 0.00 7.09 3.58 12.66 9.20 2.76 3.16 9 393953 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 497456 Transcript 0 6.48 9.46 3.29 3.14 14.93 23.20 11.10 4.02 8.21 3.77 0.65 3.44 1.64 1.88 1.26 1.83 3.22 6.92 3.45 6.15 3.19 1.28 1.80 11 413493 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 IG20 Intergenic 0 0.72 2.91 4.23 2.49 10.22 2.38 16.25 6.85 2.26 4.08 0.26 0.69 0.00 0.18 0.48 0.61 0.00 3.76 5.65 4.50 0.00 0.14 0.60 13 IG20_SR4 SilentIntergenicRegion 0 0.87 3.50 4.78 2.83 12.05 2.85 19.08 8.01 2.71 4.90 0.32 0.83 0.00 0.22 0.57 0.73 0.00 4.14 6.26 5.23 0.00 0.17 0.72 14 ER1a ExonRegion 0 2.08 1.68 1.27 0.00 6.95 12.42 5.60 0.30 1.47 2.11 1.70 0.00 0.00 0.00 0.00 0.36 2.26 3.60 5.14 2.13 3.67 1.86 2.32 15 E1_Ab KnownBoundary 0 14.52 6.38 1.74 0.00 12.14 49.23 14.93 0.00 1.79 4.62 2.11 0.00 0.00 0.00 0.00 0.00 4.11 4.68 9.41 11.63 5.75 6.18 4.27 16 E1_Ac KnownBoundary 0 75.87 12.37 7.45 1.47 68.51 22.32 37.63 10.15 4.05 3.33 14.16 0.00 0.00 15.95 19.16 12.22 20.29 31.01 41.13 11.38 13.96 13.78 15.45 17 ER1b ExonRegion 0 36.96 11.11 4.34 0.52 38.59 33.64 26.38 5.32 2.47 4.72 7.81 0.00 0.00 5.62 8.37 6.40 8.13 16.13 24.01 13.58 11.19 11.30 9.49 18 ER1c ExonRegion 0 71.44 23.80 9.44 5.40 53.28 47.97 42.69 11.43 1.80 6.70 14.11 0.00 0.00 9.52 22.19 20.96 17.55 50.18 44.37 15.94 14.34 15.28 14.58 19 E1a_E3c KnownJunction 0 13.11 21.90 23.39 8.92 12.99 19.53 17.40 9.45 5.15 8.22 2.68 0.00 0.00 5.30 0.00 16.15 0.00 68.40 55.72 8.88 3.03 5.88 20.49 20 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 21 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.14 0.00 0.00 0.00 0.00 22 ER2b ExonRegion 0 0.54 0.33 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.38 0.88 0.00 0.00 0.00 1.90 0.00 0.00 0.47 0.69 0.00 0.76 0.00 0.75 23 E2a_E3c KnownJunction 0 3.33 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 1.32 2.53 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 3.09 0.00 3.84 24 E3_Aa NovelBoundary 0 27.78 32.95 10.11 5.03 29.71 65.59 10.64 4.31 5.70 7.63 0.00 0.00 0.00 0.00 0.00 8.29 4.68 73.54 64.38 6.46 8.96 15.12 8.11 25 ER3a ExonRegion 0 5.63 4.07 8.89 1.94 0.23 11.43 2.00 1.40 3.99 1.00 0.12 0.00 0.00 1.04 4.20 0.25 1.40 2.71 1.42 1.49 6.94 6.07 8.56 26 E3_Ab KnownBoundary 0 33.78 8.09 25.34 6.69 0.00 14.71 8.74 9.61 17.74 17.19 0.00 0.00 0.00 2.77 4.45 0.00 3.83 9.24 8.28 6.01 15.38 8.94 14.34 27 ER3b ExonRegion 0 39.69 34.23 67.44 19.17 22.21 127.90 52.40 19.37 24.58 26.81 7.12 1.05 0.32 19.25 15.59 16.48 27.18 69.24 63.74 19.47 83.15 22.98 42.89 28 E3_Ac KnownBoundary 0 9.71 11.77 119.22 45.05 12.14 46.51 8.30 48.84 43.14 56.81 14.95 0.00 6.82 20.90 13.35 20.08 22.72 95.43 85.27 24.10 121.76 28.35 49.43 29 ER3c ExonRegion 1 24.86 20.13 127.03 58.92 18.73 54.73 18.03 58.50 42.44 56.76 19.63 2.89 3.61 49.60 41.88 55.78 22.26 128.16 168.99 56.08 120.53 61.81 114.30 30 ER3d ExonRegion 0 21.09 19.00 112.10 53.76 23.07 63.42 6.67 58.77 50.60 43.15 15.60 3.73 0.00 44.47 29.51 32.39 22.08 69.77 108.63 43.73 92.33 54.24 82.73 31 E3_Ae KnownBoundary 0 15.11 19.86 99.20 28.57 4.16 83.08 8.44 54.51 54.69 29.23 19.74 0.00 0.00 17.19 37.58 23.33 31.32 75.74 39.91 22.95 111.38 28.41 21.43 32 ER3e ExonRegion 0 13.20 22.25 86.71 28.94 13.85 69.68 4.36 47.58 41.85 30.63 15.80 0.00 0.00 20.83 28.67 19.58 26.41 48.15 44.41 27.91 103.19 40.69 36.10 33 ER3f ExonRegion 0 9.59 33.41 81.97 23.59 23.54 64.74 9.08 40.25 37.76 37.24 13.49 0.27 0.00 33.71 32.33 26.69 26.54 72.59 46.09 37.99 96.92 39.12 24.27 34 E3_Af KnownBoundary 0 12.00 48.61 97.16 40.99 36.50 132.03 28.88 68.10 39.09 61.84 14.32 0.00 0.00 63.81 38.57 57.76 32.73 127.22 100.52 54.97 91.06 58.60 22.88 35 ER3g ExonRegion 0 45.97 87.67 202.73 85.06 91.06 279.90 96.88 112.39 77.50 77.31 25.64 5.71 0.39 63.93 48.79 61.94 35.28 152.82 139.55 88.54 152.27 75.99 77.64 36 E3_Db KnownBoundary 0 3.26 3.35 5.38 1.37 3.99 13.80 8.04 2.51 4.63 1.64 0.00 0.00 0.00 2.47 0.00 0.00 8.79 9.37 9.22 3.20 0.00 0.00 8.19 37 E3b_E3h KnownJunction 0 93.28 101.03 234.47 106.71 103.14 184.10 77.77 110.08 86.75 80.94 26.59 12.60 6.33 67.34 36.71 20.17 40.02 120.26 114.36 84.18 162.78 74.03 61.03 38 E3b_E4a KnownJunction 0 3.78 2.76 9.08 4.59 0.00 2.90 1.90 12.73 1.33 7.31 0.00 0.00 0.00 0.00 0.00 4.10 0.00 4.27 0.00 0.00 3.15 0.00 0.00 39 ER3h ExonRegion 0 4.53 3.71 11.24 4.81 4.45 8.13 3.94 9.38 3.07 7.15 1.07 1.03 0.00 3.16 1.24 1.99 2.78 10.25 9.12 3.81 3.26 0.33 5.29 40 E3_Ag KnownBoundary 0 19.41 6.58 8.69 6.39 3.74 28.22 2.25 8.09 3.41 8.19 2.63 0.00 0.00 6.95 4.45 0.00 4.11 15.71 0.00 8.44 3.15 3.12 4.18 41 ER3i ExonRegion 0 10.35 4.42 21.23 12.00 3.55 13.91 4.52 10.71 8.83 10.47 1.55 0.28 4.89 6.96 3.60 3.49 5.96 19.60 16.97 6.34 7.38 3.90 12.07 42 E3_Ah KnownBoundary 0 3.70 0.00 25.84 12.59 0.00 8.18 5.92 12.94 9.43 7.58 2.58 0.00 6.01 4.83 0.00 11.28 4.68 11.19 18.07 6.07 6.30 3.12 15.71 43 ER3j ExonRegion 0 141.98 78.28 279.34 139.74 63.43 182.65 64.66 150.81 102.96 106.39 40.26 8.20 9.13 96.13 61.89 76.36 53.34 196.92 178.59 121.67 204.89 104.65 109.05 44 E3c_E4a KnownJunction 0 229.08 114.65 364.27 180.13 63.16 220.44 84.53 164.05 125.90 134.23 41.75 12.00 6.66 130.32 64.40 105.78 61.15 249.43 274.08 145.28 224.81 151.86 122.24 45 E3c_E4b KnownJunction 0 13.78 0.00 4.82 1.93 0.00 2.61 1.63 4.48 1.27 0.00 0.00 0.00 0.00 4.59 0.00 0.00 0.00 7.09 3.58 12.66 9.20 2.76 3.16 46 E4_Aa NovelBoundary 0 7.33 11.97 17.59 5.53 8.66 10.68 4.15 9.86 4.77 6.50 0.00 5.55 0.00 0.00 0.00 12.90 4.77 6.84 4.80 3.20 6.30 3.12 0.00 47 E4_Ab NovelBoundary 0 166.99 127.35 381.00 160.59 41.34 147.47 48.71 150.00 142.50 134.58 43.43 5.25 21.91 81.70 70.21 48.45 75.55 196.82 135.25 124.70 165.56 150.02 88.27 48 ER4a ExonRegion 0 148.98 95.32 346.74 151.85 33.40 178.00 50.78 151.16 127.06 134.30 41.34 10.61 13.16 104.68 62.70 73.63 68.47 223.34 187.22 113.93 196.84 141.21 104.68 49 ER4b ExonRegion 0 83.50 83.04 288.93 124.28 64.54 163.12 48.94 149.55 129.54 110.38 47.03 19.25 20.66 92.84 66.38 60.02 72.54 181.20 149.00 108.51 182.55 126.76 83.61 50 E4_Da KnownBoundary 0 0.00 8.81 3.52 1.96 4.16 8.69 1.68 8.01 4.08 6.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 0.00 0.00 0.00 0.00 51 E4_Db KnownBoundary 0 6.45 0.00 6.24 1.86 3.99 15.96 8.04 3.61 4.08 1.21 0.00 11.85 0.00 0.00 0.00 0.00 4.77 8.95 0.00 2.94 5.62 0.00 4.01 52 E4b_E5a KnownJunction 0 29.34 56.77 204.28 127.02 43.38 134.01 33.08 67.90 62.53 63.21 28.38 0.00 6.33 44.62 59.21 78.18 33.57 171.95 163.77 61.68 166.06 136.18 123.18 53 ER4c ExonRegion 0 31.75 48.81 196.06 107.67 61.54 181.55 39.72 90.74 75.96 68.24 30.93 12.99 23.45 67.40 63.83 75.79 37.96 192.17 176.79 56.38 156.46 144.80 105.72 54 ER4d ExonRegion 0 6.48 9.46 3.29 3.14 14.93 23.20 11.10 4.02 8.21 3.77 0.65 3.44 1.64 1.88 1.26 1.83 3.22 6.92 3.45 6.15 3.19 1.28 1.80 55 E4_Dc NovelBoundary 0 23.19 35.26 36.87 14.02 52.89 52.70 46.19 16.22 4.57 6.29 0.00 0.00 0.00 2.47 0.00 0.00 0.00 11.32 8.19 12.27 2.41 0.00 0.00 56 I4 Intron 0 10.98 13.06 12.40 7.52 8.92 18.34 9.48 6.68 4.09 4.01 1.19 0.44 0.41 1.85 1.60 0.73 1.22 5.90 8.26 6.04 1.09 0.51 1.45 57 I4_AR1 ActiveIntronRegion 0 9.27 17.85 10.66 9.17 11.72 16.07 9.90 6.91 3.90 5.68 0.00 0.00 0.00 1.08 1.66 1.89 0.00 2.20 8.95 1.86 0.77 0.00 0.00 58 I4_SR1 SilentIntronRegion 0 11.47 12.15 13.74 8.17 8.11 17.96 9.85 7.24 4.49 3.83 1.52 0.00 0.56 2.29 1.49 0.46 1.63 6.00 8.82 7.59 1.32 0.70 1.55 59 I4_AR2 ActiveIntronRegion 0 10.53 12.85 6.18 1.02 10.95 25.09 6.77 2.79 1.82 3.05 0.70 4.13 0.00 0.00 2.31 1.01 0.23 10.79 3.76 1.60 0.00 0.00 2.94 60 E5_Aa NovelBoundary 0 10.59 15.59 18.24 12.59 18.42 17.15 14.35 13.23 1.36 13.27 0.00 0.00 0.00 2.47 9.02 0.00 3.46 8.71 15.91 10.67 0.00 0.00 11.78 61 ER5a ExonRegion 0 20.33 31.03 167.09 74.65 33.75 96.21 20.16 81.38 65.24 72.23 32.12 18.76 14.87 64.04 55.56 37.94 48.83 131.32 113.96 82.22 154.15 98.94 57.04 62 E5a_E6a KnownJunction 0 47.64 33.09 267.91 132.92 27.25 41.34 9.54 89.62 88.66 90.71 23.48 12.00 20.45 37.14 18.54 19.31 39.27 190.60 72.76 51.52 146.04 69.07 41.23 63 ER5b ExonRegion 0 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 64 I5 Intron 0 12.70 0.87 7.04 1.74 1.15 14.93 15.89 8.83 3.94 6.59 0.83 0.00 0.00 0.57 0.00 5.10 0.00 6.69 4.10 4.56 0.00 0.00 6.29 65 I5_AR1 ActiveIntronRegion 0 12.92 0.89 7.15 1.77 1.17 15.19 16.16 8.98 4.00 6.70 0.84 0.00 0.00 0.58 0.00 5.16 0.00 6.81 4.17 4.62 0.00 0.00 6.40 66 ER6a ExonRegion 0 96.14 51.40 102.24 53.90 36.39 77.64 25.53 40.46 41.92 48.83 24.92 9.13 22.59 40.13 35.46 26.39 35.03 84.16 111.85 56.66 91.99 58.86 46.67 67 E6_Da KnownBoundary 0 30.60 12.70 54.43 29.70 15.03 22.49 12.72 31.05 21.04 28.26 7.53 5.55 0.00 14.01 0.00 0.00 3.65 6.38 3.95 11.89 11.68 20.08 10.67 68 ER6b ExonRegion 0 16.26 19.08 23.86 11.14 11.96 37.96 9.18 12.65 11.48 12.81 4.81 3.87 0.60 10.47 2.72 2.97 3.02 1.85 6.24 17.16 11.11 6.34 5.62 69 ER6c ExonRegion 0 1.35 3.51 5.01 2.48 2.68 11.17 2.89 0.79 3.26 1.56 1.05 0.00 0.00 0.30 1.85 0.00 0.00 1.01 0.87 1.93 0.40 0.00 0.00