Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PIK3CG Gene 0 24.43 0.24 1.00 3.16 22.37 4.48 7.65 6.96 8.93 2.76 112.68 231.03 182.95 87.52 44.32 146.11 141.97 0.00 0.00 0.05 0.04 3.71 1.29 2 440650 Transcript 1 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.81 0.00 42.08 6.61 0.00 12.96 2.44 33.47 77.42 0.00 0.00 0.00 0.00 0.00 0.00 3 496166 Transcript 1 3.26 0.00 0.00 0.00 3.99 6.64 0.00 0.00 0.00 3.22 40.17 0.00 0.00 5.18 4.45 8.03 55.07 0.00 0.00 0.00 0.00 0.00 4.27 4 473541 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 359195 Transcript 0 1.59 0.00 0.00 0.36 8.28 0.00 0.46 0.00 0.60 0.63 5.74 26.83 9.31 10.65 8.07 26.66 17.09 0.00 0.00 0.27 0.00 0.00 0.30 6 466738 Transcript 0 44.40 0.13 1.33 0.89 7.02 0.12 4.44 2.98 1.28 0.11 1.98 7.10 9.55 0.46 1.92 4.88 1.25 0.00 0.00 0.00 0.00 1.64 0.19 7 ER1a ExonRegion 1 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 21.67 0.91 0.00 6.33 4.89 9.85 35.44 0.00 0.00 0.00 0.00 0.00 0.00 8 ER1b ExonRegion 1 0.00 0.00 0.00 0.00 0.00 1.62 6.37 0.24 2.30 2.05 143.44 7.45 6.87 82.30 12.41 112.73 207.73 0.00 0.00 0.00 0.00 0.82 0.00 9 E1_Ac KnownBoundary 1 0.00 0.00 0.00 0.00 0.00 2.56 12.06 0.00 1.30 3.33 164.67 5.25 0.00 71.34 5.32 152.01 246.38 0.00 0.00 0.00 0.00 0.00 0.00 10 E1_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 3.56 1.32 64.02 12.60 20.94 33.08 4.45 52.12 48.15 0.00 0.00 0.00 0.00 3.12 0.00 11 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 62.49 12.30 0.00 19.60 0.00 57.08 119.40 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1c ExonRegion 1 0.77 0.00 0.00 0.00 0.00 2.00 7.46 2.99 4.72 3.44 192.41 17.32 9.81 89.18 6.86 172.65 258.07 0.00 0.00 0.00 0.00 2.84 0.00 13 ER1d ExonRegion 1 5.21 0.00 0.00 0.00 1.80 5.57 2.39 2.89 4.49 2.66 57.66 19.20 5.62 15.32 2.90 60.26 43.56 0.00 0.00 0.00 0.00 3.32 8.62 14 E1b_E3a KnownJunction 1 3.26 0.00 0.00 0.00 3.99 6.64 0.00 0.00 0.00 3.22 40.17 0.00 0.00 5.18 4.45 8.03 55.07 0.00 0.00 0.00 0.00 0.00 4.27 15 E1b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E2_Aa NovelBoundary 0 3.63 0.00 0.00 1.43 16.13 0.00 1.90 0.00 0.00 0.00 18.90 12.45 6.49 11.95 24.72 93.65 75.27 0.00 0.00 0.00 0.00 0.00 0.00 17 ER2a ExonRegion 0 0.36 0.00 0.00 0.35 2.09 0.00 0.68 0.00 0.94 1.17 11.40 46.80 24.69 8.55 5.99 41.32 16.88 0.00 0.00 0.00 0.00 0.00 0.00 18 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 15.53 0.00 0.00 0.00 0.00 0.00 2.68 31.36 0.00 17.78 9.52 28.37 21.69 0.00 0.00 0.00 0.00 0.00 0.00 19 ER3a ExonRegion 0 7.13 0.26 0.65 1.86 8.09 3.33 3.44 4.11 7.63 2.55 125.03 166.00 145.07 104.53 37.94 177.81 166.95 0.00 0.00 0.00 0.00 3.16 1.07 20 E3a_E4a KnownJunction 0 28.38 0.00 0.00 0.00 30.56 5.79 13.07 10.72 6.51 1.67 171.83 257.78 188.95 112.13 31.77 305.65 217.20 0.00 0.00 0.00 0.00 11.70 3.84 21 ER4a ExonRegion 0 21.74 0.00 0.00 0.54 30.97 8.53 13.72 7.46 4.83 3.30 187.64 259.64 174.53 133.94 42.16 236.19 210.41 0.00 0.00 0.00 0.00 5.18 0.62 22 E4a_E5a KnownJunction 0 15.85 0.00 0.00 1.90 15.53 0.00 20.40 6.37 4.43 4.00 189.84 282.24 248.36 170.35 67.74 273.01 227.40 0.00 0.00 0.00 0.00 2.63 0.00 23 ER5a ExonRegion 0 21.06 0.64 1.65 2.16 18.65 5.01 8.66 7.92 11.64 1.81 174.11 278.79 227.18 146.01 55.12 271.73 214.00 0.00 0.00 0.00 0.75 8.06 2.69 24 E5a_E6a KnownJunction 0 50.45 3.35 0.00 5.36 43.29 0.00 3.89 15.94 20.57 6.31 167.88 223.12 305.50 195.66 67.62 260.10 219.26 0.00 0.00 0.00 3.15 14.51 0.00 25 ER6a ExonRegion 0 35.21 0.61 3.51 3.83 22.95 8.30 10.29 8.83 16.37 3.69 214.44 265.39 271.26 134.91 72.75 244.37 282.70 0.00 0.00 0.00 0.53 8.35 3.56 26 E6a_E7a KnownJunction 0 31.56 0.00 3.67 3.33 11.46 5.00 23.72 9.98 16.81 6.66 153.51 293.50 379.03 115.13 79.98 154.06 219.26 0.00 0.00 0.00 0.00 8.88 4.35 27 E7_Aa NovelBoundary 0 13.56 0.00 0.00 2.06 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 6.82 0.00 0.00 7.95 4.77 0.00 0.00 0.00 0.00 0.00 0.00 28 ER7a ExonRegion 0 46.02 0.00 1.44 4.77 29.67 5.55 11.90 9.71 17.16 4.82 190.74 398.93 472.26 138.51 73.08 269.05 247.21 0.00 0.00 0.00 0.00 9.28 1.50 29 E7a_E8a KnownJunction 0 38.67 0.00 1.42 12.72 54.16 13.97 26.50 12.03 22.02 6.04 193.15 534.77 427.41 153.45 70.46 242.07 206.45 0.00 0.00 0.00 0.00 6.18 0.00 30 ER8a ExonRegion 0 32.32 0.00 1.43 11.22 32.00 11.73 22.76 5.80 16.39 3.92 207.18 467.58 408.03 140.93 42.85 205.76 194.48 0.00 0.00 0.00 0.00 8.20 2.08 31 E8_Ab KnownBoundary 1 47.34 0.00 2.39 11.02 33.79 8.23 20.45 1.97 12.79 1.53 219.53 422.54 465.23 153.10 33.62 145.60 246.66 0.00 0.00 0.00 0.00 8.76 4.18 32 ER8b ExonRegion 0 31.06 1.18 1.99 6.50 34.10 4.48 10.93 6.99 14.56 1.68 209.92 381.30 479.91 145.34 51.01 166.78 242.65 0.00 0.00 0.00 0.00 9.11 1.16 33 E8a_E9a KnownJunction 0 19.71 0.00 2.25 1.27 3.23 0.00 5.03 2.55 0.00 0.00 2.58 0.00 6.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 34 E8a_E10a KnownJunction 1 44.30 3.35 1.66 3.16 60.61 10.90 18.06 8.79 21.96 3.20 189.36 357.72 586.81 136.97 106.81 215.07 256.94 0.00 0.00 0.00 0.00 6.06 0.00 35 I8 Intron 0 17.94 0.00 0.57 1.91 4.20 1.15 0.62 1.21 1.73 0.00 0.30 9.87 12.42 1.05 3.54 2.80 3.11 0.00 0.00 0.00 0.00 0.00 0.00 36 I8_SR1 SilentIntronRegion 0 18.27 0.00 0.58 1.95 4.28 1.17 0.64 1.24 1.76 0.00 0.31 10.06 12.66 1.07 3.60 2.85 3.17 0.00 0.00 0.00 0.00 0.00 0.00 37 E9_Aa NovelBoundary 0 52.60 0.00 2.31 0.00 13.92 0.00 4.11 1.56 0.00 0.00 2.00 6.30 6.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 38 ER9a ExonRegion 0 69.09 0.26 0.41 0.51 10.81 0.23 3.84 3.41 2.56 0.22 1.38 14.20 12.93 0.92 3.83 9.76 2.50 0.00 0.00 0.00 0.00 0.15 0.37 39 E9_Da NovelBoundary 0 43.56 0.00 0.00 0.00 7.30 4.43 8.44 1.97 0.00 1.13 0.00 5.85 12.82 0.00 8.90 7.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 E10_Aa NovelBoundary 0 371.40 0.00 0.00 0.00 77.93 0.00 4.50 0.00 1.30 0.00 2.68 0.00 13.64 0.00 0.00 21.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER10a ExonRegion 0 80.02 1.25 1.24 5.16 36.30 6.22 13.55 10.65 17.08 4.01 216.68 529.24 557.26 163.46 97.09 279.26 216.56 0.00 0.00 0.00 0.00 4.29 0.59 42 E10_Da KnownBoundary 0 259.53 3.09 0.00 5.83 68.08 2.90 8.61 15.12 16.58 2.93 257.54 698.33 507.43 161.11 79.49 420.74 306.97 0.00 0.00 0.00 0.00 8.45 3.84 43 ER10b ExonRegion 0 101.20 1.02 0.00 5.28 41.89 8.14 7.32 12.42 14.13 2.29 203.50 636.70 452.15 158.30 72.26 331.86 262.83 0.00 0.00 0.00 0.00 8.27 5.87 44 E10_Db NovelBoundary 0 26.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.69 6.30 0.00 2.47 0.00 12.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 E10b_E11a KnownJunction 0 40.90 0.00 0.00 4.93 47.20 14.08 11.79 13.97 16.35 1.58 152.56 529.82 411.34 145.21 83.94 279.93 228.52 0.00 0.00 0.00 0.00 11.51 3.76 46 ER11a ExonRegion 0 55.65 0.00 0.63 1.80 35.43 12.59 15.12 8.47 13.28 2.85 180.42 407.40 398.69 130.60 71.91 209.69 231.30 0.00 0.00 0.00 0.00 6.81 1.26 47 E11a_E12a KnownJunction 1 111.20 0.00 3.55 0.00 39.90 17.66 15.15 14.66 18.03 5.40 173.15 459.60 692.81 165.11 112.74 235.24 232.16 0.00 0.00 0.00 0.00 8.88 4.35 48 ER12a ExonRegion 0 51.72 0.00 1.76 5.44 41.90 11.19 16.87 16.25 10.52 3.48 179.54 475.69 401.47 136.25 88.97 281.30 224.40 0.00 0.00 0.00 0.00 5.35 1.28 49 E12a_E13a KnownJunction 0 9.63 0.00 1.48 3.23 41.51 5.11 3.80 8.79 7.78 1.67 165.15 345.71 264.92 133.62 91.97 206.61 179.52 0.00 0.00 0.00 0.00 3.00 3.33 50 I12_SR1 SilentIntronRegion 0 10.57 0.00 0.10 0.43 5.21 0.87 2.13 2.85 1.07 0.54 7.12 21.20 14.98 3.85 3.96 12.07 10.97 0.00 0.00 0.00 0.00 0.22 0.00 51 I12_AR1 ActiveIntronRegion 0 14.36 0.00 0.00 0.49 0.00 0.00 1.13 2.47 0.00 0.12 10.08 10.82 20.10 10.32 2.07 5.84 15.80 0.00 0.00 0.00 0.00 0.00 0.00 52 ER13a ExonRegion 0 32.09 0.00 2.57 6.32 42.49 5.44 12.81 10.08 12.59 5.57 140.23 365.26 195.45 94.98 80.60 133.23 180.71 0.00 0.00 0.00 0.00 2.27 0.85 53 E13_Da KnownBoundary 0 37.86 0.00 1.83 7.16 24.96 14.48 14.62 9.73 14.24 5.78 126.77 329.06 193.33 82.23 90.49 119.46 163.16 0.00 0.00 0.00 0.00 6.25 0.00 54 ER13b ExonRegion 0 26.01 0.32 0.82 4.59 37.65 5.50 10.57 10.67 9.88 2.45 78.28 271.50 200.23 65.63 40.44 92.65 89.28 0.00 0.00 0.24 0.00 4.71 1.59 55 ER13c ExonRegion 0 4.40 0.00 0.00 0.73 7.20 0.00 0.71 0.00 0.86 0.71 3.12 2.33 3.25 5.62 8.70 10.29 12.70 0.00 0.00 0.82 0.00 0.00 0.90 56 IG24_SR1 SilentIntergenicRegion 0 45.94 0.16 1.25 8.76 45.43 7.82 12.08 11.67 13.26 3.13 71.09 173.48 148.56 57.18 70.46 86.53 88.09 0.00 0.00 0.00 0.00 6.27 0.67 57 IG24_AR1 ActiveIntergenicRegion 0 22.72 2.30 0.00 1.73 13.56 4.40 1.06 3.23 0.25 0.00 1.80 45.60 45.02 10.72 18.76 13.28 6.82 0.00 0.00 0.00 0.00 4.72 0.00 58 IG24_AR2 ActiveIntergenicRegion 0 103.75 0.36 3.55 9.87 48.84 12.15 12.89 12.11 8.75 1.48 79.34 251.25 256.77 46.55 91.79 73.75 86.18 0.00 0.00 0.00 0.00 4.09 1.05 59 IG24_SR3 SilentIntergenicRegion 0 147.61 0.00 9.56 16.63 51.85 16.09 22.66 18.93 14.39 5.55 111.63 158.97 100.42 85.20 169.47 128.05 124.23 0.00 0.00 0.00 0.00 0.98 0.00 60 IG24_AR3 ActiveIntergenicRegion 0 121.80 1.78 4.22 14.11 67.60 8.07 14.87 22.43 10.69 9.99 45.48 152.68 85.33 43.68 100.29 62.00 47.10 0.00 0.00 0.37 0.00 5.52 0.26