Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PMPCB Gene 0 136.32 150.11 220.35 183.81 152.10 166.26 149.10 115.96 69.99 123.19 205.60 227.01 201.73 188.13 215.73 168.39 176.63 70.39 108.66 102.47 68.76 119.93 71.40 2 249269 Transcript 0 18.44 26.29 20.54 21.46 19.98 24.04 25.27 15.87 11.44 17.44 4.96 29.68 20.80 7.93 8.77 6.19 4.84 2.97 7.22 10.44 1.05 11.01 2.40 3 428154 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 420236 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 456433 Transcript 0 56.12 45.88 64.28 49.39 39.52 40.15 58.32 25.30 16.74 32.52 17.50 15.76 16.72 23.10 39.00 15.25 15.29 37.18 8.52 24.67 10.35 17.85 1.96 6 443722 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 498530 Transcript 0 5.14 7.97 6.02 14.14 19.04 11.76 19.17 4.42 7.95 6.38 8.59 18.22 20.22 7.23 3.89 7.87 11.57 5.33 11.36 10.82 2.18 5.79 6.46 8 444457 Transcript 0 5.30 13.04 12.30 20.67 17.68 16.90 13.42 16.42 9.53 12.79 5.23 7.58 6.71 2.58 6.00 8.81 5.08 4.78 4.19 9.53 3.62 5.24 3.90 9 453466 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 469560 Transcript 1 40.65 40.78 38.03 43.67 51.93 36.39 54.75 34.11 10.32 27.39 19.35 53.74 36.26 24.38 27.50 18.31 22.57 9.08 15.70 19.95 7.12 22.72 10.05 11 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 12 E1_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.16 13 E1_Af KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E1_Ag KnownBoundary 0 0.00 2.63 1.33 1.33 0.00 0.00 4.37 0.00 0.00 3.17 2.21 0.00 0.00 0.00 0.00 0.00 3.74 0.00 0.00 0.00 0.00 2.51 0.00 15 ER1b ExonRegion 0 1.65 0.23 0.41 0.00 0.00 0.00 1.91 0.00 0.00 0.00 0.00 0.00 0.00 2.89 4.51 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 16 ER1c ExonRegion 0 3.76 4.07 1.23 0.00 0.00 0.00 2.65 0.00 0.00 0.00 1.72 0.00 0.52 5.23 9.35 0.00 2.20 0.00 0.00 2.13 0.00 1.62 0.00 17 ER1d ExonRegion 0 6.35 6.10 1.23 0.00 0.00 0.00 2.65 0.00 0.00 0.00 1.93 0.00 4.69 11.37 14.51 0.00 3.30 1.85 0.00 2.13 0.00 2.08 0.00 18 ER1e ExonRegion 0 8.47 6.10 1.23 0.00 0.00 0.00 2.65 0.00 0.00 0.00 1.93 0.00 9.38 14.62 20.31 0.00 3.30 1.85 3.19 2.13 0.00 2.08 2.94 19 ER1f ExonRegion 0 8.47 8.13 1.23 1.36 0.00 0.00 5.30 0.00 0.00 0.00 1.93 0.00 9.38 22.74 34.82 0.00 9.90 1.85 3.19 2.13 0.00 2.08 2.94 20 ER1g ExonRegion 1 178.79 213.16 159.87 114.70 101.28 205.40 178.88 44.05 45.48 68.20 111.71 60.27 200.32 143.15 200.16 216.20 204.85 41.99 109.15 74.32 97.60 88.46 91.59 21 E1_Da KnownBoundary 0 0.00 0.00 3.02 0.00 3.90 2.16 0.00 0.00 0.00 0.99 4.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.14 0.00 2.78 0.00 0.00 22 E1a_E2a KnownJunction 1 118.02 77.16 140.21 78.61 39.39 122.43 67.44 66.01 55.93 98.15 55.07 120.64 119.96 50.50 90.24 150.22 123.89 24.83 30.12 82.77 52.63 21.55 60.69 23 ER1h ExonRegion 0 0.55 2.30 4.60 2.79 2.06 5.48 3.39 2.35 1.86 1.34 2.87 1.38 0.50 2.15 2.58 3.39 6.82 3.26 1.95 2.07 1.71 1.72 1.90 24 E1b_E2a KnownJunction 0 0.00 2.96 7.21 8.22 4.07 4.83 1.72 8.50 4.34 5.24 0.00 0.00 0.00 0.00 0.00 7.86 0.00 0.00 0.00 3.26 3.03 9.00 0.00 25 ER2a ExonRegion 0 140.92 127.28 377.21 264.91 75.85 98.36 90.90 187.47 128.78 224.55 604.94 364.47 386.31 532.05 440.43 488.23 569.39 229.38 292.33 254.99 282.61 227.69 213.73 26 E2a_E3a KnownJunction 1 157.66 260.94 567.75 509.93 132.77 187.34 154.08 284.27 197.86 286.03 444.17 652.56 674.63 703.28 658.14 1317.26 409.54 588.64 646.70 431.57 213.19 338.19 572.70 27 ER3a ExonRegion 0 146.72 246.90 500.08 392.34 456.29 559.90 429.68 241.80 165.19 253.76 606.86 635.93 693.26 455.44 442.42 618.20 497.75 298.63 286.32 290.85 233.37 260.70 269.73 28 E3a_E4a KnownJunction 0 197.81 476.03 575.32 396.65 673.26 1034.23 934.04 267.68 173.41 299.83 724.66 856.33 613.11 492.62 496.32 346.06 519.49 163.41 197.94 254.84 255.94 256.32 126.85 29 E3b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E3b_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER3b ExonRegion 0 0.00 1.02 0.92 0.00 2.01 1.38 0.33 0.00 0.31 0.29 0.97 0.00 0.00 1.22 0.73 0.74 0.00 0.00 0.00 0.00 1.10 1.04 0.00 32 E4_Ab NovelBoundary 0 85.57 351.12 349.22 249.75 226.91 466.55 469.27 161.13 120.80 204.26 379.25 332.36 292.68 209.78 252.43 186.19 217.48 103.59 121.98 121.19 92.67 125.34 60.44 33 ER4a ExonRegion 0 150.06 484.60 502.28 367.84 531.40 925.33 773.06 249.24 174.89 283.06 751.12 817.40 576.87 492.60 509.46 326.34 534.08 174.06 197.17 245.11 235.58 264.40 125.10 34 ER4b ExonRegion 0 297.28 603.77 519.32 429.37 412.89 512.91 437.25 287.31 190.03 323.88 765.19 889.42 908.50 602.97 600.41 492.16 629.89 174.97 293.77 313.76 206.27 415.31 178.38 35 E4a_E5a KnownJunction 0 570.25 561.74 676.79 548.08 348.64 400.68 422.81 368.97 224.07 347.78 922.13 910.65 987.11 535.88 528.84 602.75 797.38 145.13 265.04 355.83 223.76 429.80 248.41 36 E4a_E5b KnownJunction 0 26.67 8.88 19.69 10.16 8.66 12.61 15.28 8.50 6.16 7.28 2.68 0.00 6.82 2.71 9.39 3.85 8.32 6.76 9.13 6.07 0.00 0.00 0.00 37 ER5a ExonRegion 0 511.89 402.26 665.59 581.43 419.26 419.43 392.50 391.50 245.14 394.84 828.61 913.49 983.58 658.75 669.25 599.75 744.32 191.06 370.67 356.27 193.15 517.78 230.15 38 E5_Ab KnownBoundary 1 799.99 549.90 759.44 667.28 924.28 891.70 733.15 388.97 244.38 428.58 863.38 1255.46 1966.27 905.94 915.88 658.37 763.53 210.09 387.96 453.75 259.03 443.58 291.52 39 ER5b ExonRegion 0 488.29 464.97 799.35 701.31 569.69 659.96 534.00 405.03 257.04 410.19 775.81 876.16 923.59 705.11 685.72 584.24 698.87 212.73 325.32 372.58 211.72 434.84 247.87 40 E5a_E6a KnownJunction 0 593.36 628.11 936.22 883.10 720.12 808.40 764.46 472.72 298.15 473.52 826.63 653.01 855.95 673.50 623.40 784.67 854.88 228.95 432.01 453.17 169.02 594.27 356.99 41 ER6a ExonRegion 0 466.32 537.81 694.60 606.99 494.75 643.92 524.11 360.79 234.47 395.05 751.34 832.45 782.18 747.48 737.72 676.34 632.00 275.96 451.33 346.09 213.29 444.34 280.78 42 E6a_E7a KnownJunction 0 509.50 475.05 655.36 543.69 312.82 559.17 435.80 317.79 205.29 337.36 627.74 632.46 396.89 613.99 622.78 556.69 490.79 234.92 303.16 320.99 241.06 297.72 269.49 43 E6a_E8a KnownJunction 0 85.57 82.88 108.87 88.63 70.37 67.69 101.35 42.10 27.31 57.75 32.32 31.51 26.62 43.50 68.61 26.66 22.25 67.61 7.91 43.27 20.70 35.70 3.93 44 ER7a ExonRegion 0 308.43 419.76 615.92 490.26 390.61 516.19 392.49 286.28 176.72 303.89 639.16 756.24 494.45 724.41 658.94 591.95 566.47 271.75 362.09 292.11 250.93 319.33 271.34 45 E7a_E8a KnownJunction 0 349.32 436.50 632.71 473.60 334.21 407.04 429.61 320.58 194.12 339.56 572.20 700.58 386.83 754.37 720.32 534.05 543.99 269.57 333.75 244.42 285.16 364.40 233.55 46 ER8a ExonRegion 0 434.49 469.36 667.09 534.89 413.24 495.79 432.67 329.51 195.45 357.53 628.54 660.63 377.74 748.03 754.59 636.16 570.18 326.20 417.88 330.32 323.91 277.69 277.10 47 E8_Da KnownBoundary 0 3.04 14.54 7.30 23.54 41.26 11.58 20.76 7.31 8.45 6.04 12.37 12.45 38.63 14.24 4.45 16.41 31.98 7.05 15.34 19.11 6.30 10.47 12.29 48 E8a_E9a KnownJunction 0 713.31 751.77 668.19 497.01 510.44 592.61 503.81 306.95 201.10 348.53 557.46 680.17 477.08 687.62 855.31 678.11 452.64 279.89 410.55 269.35 247.97 231.59 358.95 49 ER8b ExonRegion 0 5.14 7.97 6.02 14.14 19.04 11.76 19.17 4.42 7.95 6.38 8.59 18.22 20.22 7.23 3.89 7.87 11.57 5.33 11.36 10.82 2.18 5.79 6.46 50 ER9a ExonRegion 0 531.04 545.31 675.42 527.62 463.93 584.31 469.33 334.86 193.81 337.97 628.49 495.82 415.43 656.78 832.88 575.72 522.10 261.30 375.40 308.89 269.18 313.24 239.69 51 E9a_E10b KnownJunction 0 570.25 421.11 808.69 619.73 429.80 549.80 504.38 345.23 177.75 367.77 585.10 563.13 483.73 499.62 868.54 529.18 519.96 199.52 367.45 323.55 233.64 338.07 236.03 52 E9a_E11b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 I9 Intron 0 6.35 11.18 7.30 11.17 34.78 11.92 27.14 7.73 0.00 10.24 3.87 1.78 5.79 3.82 10.75 1.49 4.95 0.92 4.78 11.74 1.10 11.46 2.94 54 I9_AR1 ActiveIntronRegion 0 6.46 11.41 7.45 11.33 35.45 12.14 27.64 7.86 0.00 10.45 3.94 1.82 5.91 3.90 10.97 1.52 5.05 0.94 4.87 11.96 1.12 11.69 3.00 55 ER10a ExonRegion 0 41.68 33.83 21.42 25.49 45.56 27.40 41.86 25.68 9.26 22.83 13.62 30.95 31.08 19.66 22.36 19.54 20.19 9.83 18.58 19.80 6.23 15.22 13.30 56 E10_Ab KnownBoundary 0 41.04 42.23 41.96 42.39 76.06 32.03 52.20 44.69 10.30 21.36 0.00 26.41 26.13 9.36 14.46 7.78 3.65 1.91 3.76 9.59 0.00 8.14 15.71 57 ER10b ExonRegion 0 421.14 390.42 976.94 741.54 496.62 550.81 465.74 410.84 226.67 432.67 738.03 709.57 612.52 632.49 899.42 585.65 511.83 225.27 347.47 326.53 228.38 407.83 218.00 58 E10_Da KnownBoundary 0 51.12 43.28 64.22 62.10 82.00 63.15 75.78 21.40 7.73 14.13 19.74 49.82 46.43 19.48 23.24 8.37 9.16 4.48 14.97 14.32 0.00 28.04 4.35 59 E10a_E10c KnownJunction 0 409.18 380.59 1066.91 743.60 738.12 587.22 482.61 414.72 238.92 442.44 810.99 628.70 948.31 587.97 892.02 469.19 555.40 184.63 296.10 310.77 196.51 388.10 179.52 60 ER10c ExonRegion 1 39.63 47.74 54.65 61.84 58.30 45.39 67.64 42.54 11.39 31.96 25.08 76.52 41.45 29.09 32.64 17.09 24.96 8.34 12.82 20.11 8.02 30.21 6.79 61 E10_Ac KnownBoundary 0 52.82 64.92 46.04 65.13 12.31 20.27 52.02 54.05 12.62 30.41 12.27 50.12 53.41 34.02 27.32 12.13 12.53 6.59 4.80 14.51 0.00 23.15 4.10 62 ER10d ExonRegion 0 353.63 421.97 934.53 699.30 553.48 478.27 430.93 403.85 232.44 438.64 703.14 676.97 565.20 489.23 840.61 377.09 488.31 153.91 324.40 303.99 164.53 392.98 172.83 63 E10b_E11a KnownJunction 0 479.71 465.38 957.48 796.80 645.59 540.48 488.22 388.27 252.95 463.10 667.17 804.56 459.55 608.87 914.40 379.39 531.84 125.98 345.80 288.91 157.47 388.65 181.91 64 E11_Aa NovelBoundary 0 17.86 5.46 67.35 36.49 32.17 24.99 38.16 36.31 14.67 27.59 22.06 12.60 6.82 2.47 8.90 16.06 23.47 0.00 4.80 16.49 0.00 11.39 3.41 65 ER11a ExonRegion 0 375.90 394.57 867.27 688.60 441.22 376.07 342.09 352.76 201.88 420.05 625.06 602.48 435.37 415.05 708.67 363.30 445.75 112.91 234.92 256.07 86.73 443.02 139.57 66 E11_Da KnownBoundary 0 148.77 138.46 275.83 199.44 130.82 131.86 176.56 130.90 69.47 123.22 88.34 70.37 48.37 85.35 96.92 38.11 78.26 46.34 41.51 113.26 14.39 101.65 44.05 67 E11a_E11b KnownJunction 0 366.58 370.53 609.85 445.56 286.93 221.63 185.17 238.56 135.07 246.43 403.31 612.50 349.65 300.78 679.28 295.99 243.76 36.73 143.82 130.45 52.82 375.91 71.79 68 E11a_E12a KnownJunction 0 10.30 30.92 13.10 19.78 27.50 30.83 9.89 28.63 15.91 16.95 2.32 0.00 0.00 2.41 0.00 0.00 0.00 1.95 4.80 5.75 0.00 0.00 3.84 69 ER11b ExonRegion 0 152.44 135.55 286.17 199.66 142.52 163.30 153.49 126.75 63.85 133.77 82.91 102.20 61.83 67.21 105.67 43.57 80.61 27.21 43.30 64.05 13.48 105.93 33.58 70 E11_Ab KnownBoundary 0 202.04 116.69 295.64 189.25 138.79 145.83 160.58 138.09 42.07 104.41 46.49 55.97 62.17 58.57 65.52 42.81 57.13 13.56 42.64 52.60 5.56 91.67 11.35 71 ER11c ExonRegion 0 325.76 267.52 555.47 410.62 345.71 301.70 317.55 256.52 141.69 283.15 347.31 512.65 405.84 245.29 451.52 167.46 253.48 47.50 118.53 144.07 40.13 320.37 54.59 72 E11_Db KnownBoundary 1 517.43 301.26 419.91 336.75 423.68 328.56 407.58 163.84 103.07 227.60 208.21 585.79 495.58 295.49 485.20 93.82 161.94 25.12 102.50 111.34 25.45 258.71 41.66 73 ER11d ExonRegion 1 219.95 187.35 314.04 290.47 247.13 206.84 228.33 175.68 105.59 210.88 135.25 455.70 298.24 172.91 266.84 88.25 79.31 19.24 78.82 91.87 19.10 205.57 20.41 74 E11_Dc KnownBoundary 1 102.31 128.33 150.56 119.50 128.44 122.88 135.09 92.38 58.51 90.95 55.49 258.53 191.06 63.34 157.74 65.71 34.60 3.73 50.92 56.18 6.05 130.73 19.29 75 E11_Dd KnownBoundary 1 234.34 106.49 186.98 214.13 220.20 146.34 147.50 133.00 66.35 123.00 56.28 133.99 155.83 81.82 147.48 101.94 67.98 13.89 117.84 51.20 10.26 125.65 32.35 76 ER11e ExonRegion 1 193.36 144.38 262.32 264.40 209.09 166.88 168.71 175.69 100.66 181.29 81.46 282.03 223.45 127.61 208.89 118.25 63.19 15.57 103.07 73.86 13.06 167.13 31.46 77 ER11f ExonRegion 1 197.43 105.05 210.18 227.66 193.03 129.32 141.88 138.97 94.81 156.28 71.13 230.76 224.65 106.35 205.93 91.78 80.21 17.18 85.69 66.72 15.25 137.47 41.52 78 E11_De KnownBoundary 1 79.50 76.30 142.66 136.35 89.73 70.75 116.55 77.67 68.95 117.06 47.43 189.51 113.79 51.39 68.73 44.95 67.32 12.10 29.84 78.94 9.33 79.24 20.83 79 ER11g ExonRegion 1 36.89 52.58 41.08 42.92 39.97 48.08 50.54 31.75 22.89 34.88 9.92 59.36 41.61 15.87 17.55 12.37 9.69 5.93 14.44 19.67 2.11 22.01 4.80 80 E11_Df NovelBoundary 0 34.82 84.98 34.59 63.50 47.79 25.16 50.21 38.98 29.89 37.69 17.00 85.23 20.45 12.01 13.35 4.19 30.67 13.72 25.60 30.23 5.81 25.11 4.01 81 Ix Intron 0 25.91 58.28 39.93 76.34 60.97 61.81 52.21 39.79 33.65 45.97 11.25 38.92 22.10 10.47 8.81 12.27 14.70 15.30 22.82 36.57 7.12 23.12 12.93 82 Ix_AR1 ActiveIntronRegion 0 25.25 51.92 38.62 79.06 64.42 70.95 56.16 42.84 37.08 52.02 12.22 40.67 23.20 11.50 9.46 13.19 16.09 16.97 24.10 39.68 8.06 25.72 13.58 83 Ix_AR2 ActiveIntronRegion 0 40.12 120.57 63.69 88.94 63.88 30.58 48.68 35.65 25.47 27.21 9.52 38.47 22.18 7.68 7.83 11.26 11.89 11.33 24.12 31.86 4.18 16.20 13.92 84 Ix_SR1 SilentIntronRegion 0 14.85 9.42 14.91 25.21 33.27 13.05 22.79 9.91 5.35 11.12 7.38 7.00 24.94 4.66 9.43 14.96 13.09 6.78 7.91 11.91 3.67 10.83 12.58 85 Ix_SR1 SilentIntronRegion 0 11.09 16.93 15.59 29.70 20.16 16.68 30.10 13.85 13.60 14.67 8.89 27.92 23.58 6.68 7.59 9.42 7.78 4.37 3.01 12.46 1.46 15.80 3.60 86 Ix Intron 0 11.69 13.21 11.86 12.54 27.81 19.06 33.12 13.39 10.76 15.55 6.91 17.62 35.85 16.45 8.65 29.93 13.94 10.75 10.35 15.91 6.44 19.63 9.54 87 Ix_SR1 SilentIntronRegion 0 12.44 21.62 14.80 12.91 28.34 20.40 38.51 17.31 14.17 19.12 5.94 15.45 54.02 8.80 6.12 29.06 17.40 9.99 10.46 15.68 7.56 13.14 7.11 88 Ix_AR1 ActiveIntronRegion 0 17.64 20.34 18.58 21.81 45.93 45.23 54.72 23.33 19.35 26.00 11.92 23.09 25.01 21.38 17.41 28.73 20.36 20.33 10.09 24.11 8.81 17.71 7.83 89 Ix_SR2 SilentIntronRegion 0 10.46 2.92 8.01 11.48 25.98 15.49 25.39 8.12 6.18 10.69 7.70 19.95 15.97 25.23 10.97 31.49 9.52 10.95 10.39 15.70 5.01 27.69 12.68 90 ER12a ExonRegion 0 15.94 34.05 21.65 54.05 42.35 37.83 28.67 35.99 18.89 37.92 10.88 11.78 16.72 3.41 13.79 3.75 11.20 4.88 11.20 22.29 1.81 4.82 3.35 91 E12_Da KnownBoundary 0 19.86 34.27 40.21 47.01 60.78 59.51 28.93 34.83 15.74 40.75 16.48 25.21 40.09 6.89 8.90 3.76 0.00 3.48 0.00 23.27 0.00 8.57 0.00 92 ER12b ExonRegion 0 15.35 33.87 25.09 51.00 46.90 40.39 35.15 38.41 22.40 31.79 12.82 21.35 19.63 5.61 15.42 15.19 8.44 11.10 10.62 23.27 6.12 4.98 9.80