Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	PILRA	Gene	0	21.60	10.92	94.75	39.49	23.29	23.75	24.06	92.42	39.95	32.45	109.30	9.57	85.10	54.79	91.03	27.53	106.35	42.10	21.97	27.83	6.34	6.05	10.09
2	432297	Transcript	0	4.02	2.19	23.42	8.40	1.22	2.11	3.21	19.80	9.64	8.03	0.94	0.00	2.56	0.23	0.00	0.00	0.00	4.85	1.80	4.27	0.00	0.35	0.00
3	198536	Transcript	0	13.86	4.09	21.83	39.76	16.33	18.76	10.34	51.26	34.47	18.10	155.49	10.19	140.67	93.73	197.67	51.39	134.45	4.33	5.24	6.84	1.96	3.68	8.55
4	453419	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	484934	Transcript	1	17.27	18.67	85.73	40.77	23.64	19.07	20.77	75.75	20.47	34.36	16.71	5.42	38.46	12.25	31.41	13.56	29.87	72.74	41.55	46.57	7.65	6.40	12.03
6	394000	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.12	0.00	0.00	3.46	0.00	0.00	0.00	0.00	0.00	0.00
7	350573	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
8	474013	Transcript	0	10.68	6.90	50.46	20.91	21.54	9.09	14.89	32.91	14.83	9.06	5.05	1.55	5.71	5.09	5.47	4.14	8.03	6.40	8.35	12.97	3.28	1.98	1.53
9	ER1a	ExonRegion	0	2.28	1.18	17.35	7.02	0.18	0.98	3.26	14.14	9.11	7.23	0.35	0.00	0.85	0.70	0.00	0.00	0.00	4.39	0.69	4.45	0.00	1.04	0.00
10	E1_Da	NovelBoundary	0	948.32	270.22	640.72	450.89	311.21	187.85	241.44	433.78	186.83	218.47	184.36	93.63	92.36	204.60	302.12	218.23	173.45	249.47	298.46	277.98	80.13	158.96	141.62
11	E1a_E2d	KnownJunction	0	9.78	5.39	52.90	18.18	3.48	5.34	6.36	45.26	19.82	16.84	2.47	0.00	6.82	0.00	0.00	0.00	0.00	10.16	4.71	8.37	0.00	0.00	0.00
12	I1	Intron	0	3.86	4.32	15.75	10.67	7.62	4.08	8.63	10.85	6.46	7.99	1.24	1.17	1.37	1.31	3.91	2.74	2.18	18.22	9.45	14.25	2.65	1.25	2.83
13	I1_SR1	SilentIntronRegion	0	3.87	4.33	15.76	10.68	7.63	4.09	8.64	10.86	6.47	7.99	1.24	1.18	1.37	1.32	3.91	2.74	2.19	18.24	9.46	14.26	2.65	1.25	2.83
14	E2_Ab	NovelBoundary	0	7.48	5.72	26.29	3.23	11.21	2.73	12.06	9.20	4.69	7.01	0.00	0.00	0.00	2.30	0.00	0.00	0.00	16.04	3.95	5.75	3.15	0.00	0.00
15	ER2a	ExonRegion	0	0.00	0.00	2.01	2.14	6.88	0.65	1.99	2.22	0.18	1.23	0.00	0.00	0.00	1.04	0.00	0.00	0.00	3.56	2.73	1.37	0.94	0.00	1.26
16	ER2b	ExonRegion	0	11.97	4.10	17.38	11.57	10.32	24.44	11.93	13.75	6.90	12.98	2.49	2.60	0.00	2.71	0.00	0.00	0.00	19.72	12.65	15.47	1.42	1.61	11.54
17	E2_Ac	KnownBoundary	0	75.49	9.54	25.16	16.18	0.00	94.72	23.85	25.96	13.17	25.17	2.32	0.00	0.00	0.00	0.00	0.00	0.00	25.99	4.71	20.39	0.00	6.00	37.73
18	ER2c	ExonRegion	0	26.52	6.94	27.33	9.23	9.39	26.05	13.81	17.77	17.01	17.27	0.47	0.00	0.09	0.03	1.97	0.00	1.00	19.28	9.98	14.93	0.29	1.93	17.07
19	E2_Ad	KnownBoundary	0	14.08	9.54	26.29	7.92	14.69	0.00	12.94	4.31	14.70	6.02	0.00	0.00	0.00	0.00	0.00	0.00	4.30	13.68	3.67	12.08	0.00	0.00	7.85
20	ER2d	ExonRegion	0	16.52	9.95	82.59	35.56	20.35	13.09	11.85	87.19	37.97	43.22	2.09	1.31	0.84	15.93	20.62	2.18	2.83	51.55	25.48	29.86	5.42	1.41	6.91
21	E2a_E3a	KnownJunction	0	27.34	24.21	123.44	73.38	41.00	21.41	26.19	98.50	71.67	52.27	9.11	0.00	0.00	2.47	5.19	3.85	4.77	70.22	16.75	27.16	5.56	3.12	19.72
22	E3_Aa	NovelBoundary	0	10.00	0.00	29.42	5.63	4.16	0.00	4.24	4.31	3.91	4.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.02	0.00	0.00	0.00	0.00	0.00
23	ER3a	ExonRegion	0	35.86	15.32	276.34	62.44	29.25	45.74	63.71	239.12	88.50	64.14	149.69	9.79	44.09	80.80	141.35	44.99	166.66	118.69	50.30	62.57	17.83	14.68	22.77
24	E3_Da	KnownBoundary	1	12.74	25.46	139.23	63.10	26.06	10.73	13.12	122.89	35.94	35.67	29.85	0.00	34.41	9.30	65.39	37.68	8.70	71.59	72.38	71.91	0.00	10.59	8.02
25	E3a_E4a	KnownJunction	0	0.00	0.00	22.35	1.63	18.42	2.67	5.87	7.31	8.22	4.43	0.00	0.00	0.00	2.41	0.00	0.00	0.00	2.03	4.80	2.56	2.66	0.00	0.00
26	E3a_E5a	KnownJunction	0	20.60	9.21	15.76	38.66	22.75	14.88	8.26	62.31	42.45	23.16	160.09	0.00	109.73	82.11	248.35	65.88	154.09	6.92	0.00	11.63	2.78	0.00	11.35
27	E3a_E6a	KnownJunction	0	7.56	0.00	10.53	18.05	3.31	16.35	9.01	18.61	16.67	13.65	89.34	0.00	38.47	45.62	47.72	28.80	75.64	0.00	4.61	0.00	2.66	14.88	23.73
28	E3a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.12	0.00	0.00	3.46	0.00	0.00	0.00	0.00	0.00	0.00
29	ER3b	ExonRegion	1	17.27	18.67	85.73	40.77	23.64	19.07	20.77	75.75	20.47	34.36	16.71	5.42	38.46	12.25	31.41	13.56	29.87	72.74	41.55	46.57	7.65	6.40	12.03
30	E3_Db	NovelBoundary	0	9.71	8.75	89.59	28.07	44.65	16.30	45.75	55.98	10.42	25.52	16.27	0.00	20.13	7.30	25.47	12.30	36.37	51.40	12.80	41.23	3.09	0.00	4.01
31	I3	Intron	0	9.37	11.48	64.04	35.98	23.13	11.79	18.91	52.44	12.23	18.92	11.60	3.17	15.55	9.36	23.44	11.68	31.83	49.79	27.76	32.52	2.05	2.83	6.50
32	I3_AR1	ActiveIntronRegion	0	6.11	10.21	68.07	38.22	22.80	13.56	20.00	58.13	14.11	22.75	14.14	3.06	13.89	8.96	26.97	14.81	35.90	65.90	30.01	37.80	2.99	3.79	7.41
33	I3_SR1	SilentIntronRegion	0	5.93	7.22	65.30	29.47	8.61	3.62	8.68	41.20	8.89	16.63	5.95	7.07	20.04	9.01	20.67	4.19	29.71	31.66	21.80	23.56	0.88	1.94	3.96
34	I3_AR2	ActiveIntronRegion	0	18.93	17.80	55.65	37.57	36.66	15.49	25.86	51.52	11.54	13.55	11.60	0.00	15.08	10.56	19.13	12.11	25.96	34.21	28.79	30.24	1.22	1.72	7.00
35	E4_Aa	NovelBoundary	0	17.78	21.11	83.68	40.65	4.33	20.61	12.50	43.70	17.68	12.65	19.22	6.30	6.17	2.47	15.20	10.77	32.16	19.15	8.09	44.61	0.00	3.06	0.00
36	ER4a	ExonRegion	0	21.36	13.80	78.57	40.18	24.66	15.52	23.90	58.51	21.44	13.70	10.09	3.10	11.43	7.77	10.93	8.28	16.07	10.76	11.89	23.39	3.91	3.97	3.07
37	E4_Da	NovelBoundary	1	3.78	0.00	12.86	34.09	18.68	16.35	7.86	19.30	14.35	12.14	4.74	0.00	39.61	4.47	25.59	6.41	8.32	0.00	13.37	14.51	0.00	0.00	3.50
38	I4	Intron	0	4.44	2.63	6.53	11.41	9.47	5.53	6.20	7.43	4.07	4.64	4.85	2.71	21.06	4.49	10.68	5.46	12.43	2.07	2.38	2.63	0.45	0.39	1.71
39	I4_SR1	SilentIntronRegion	0	4.50	2.60	6.67	11.65	9.49	5.45	6.29	7.58	4.15	4.74	4.95	2.77	21.30	4.54	10.74	5.40	12.62	2.11	2.43	2.57	0.46	0.40	1.68
40	ER5a	ExonRegion	0	16.75	7.16	25.03	43.45	20.05	24.01	9.44	61.39	48.33	25.49	188.02	10.44	181.69	98.59	179.03	53.21	171.18	2.43	3.81	5.15	0.97	3.68	5.38
41	E5a_E6a	KnownJunction	0	18.08	0.00	44.53	74.78	15.62	35.49	21.68	79.11	46.93	22.54	273.86	30.31	271.25	193.18	363.31	86.47	212.53	4.39	14.40	9.20	3.15	11.02	16.22
42	I5	Intron	0	3.96	0.76	3.13	4.84	4.84	2.35	2.84	1.98	2.39	2.46	8.60	1.48	17.47	6.50	10.32	4.62	15.33	0.90	1.25	0.67	0.30	0.21	0.81
43	I5_SR1	SilentIntronRegion	0	3.96	0.76	3.13	4.84	4.85	2.35	2.84	1.98	2.39	2.46	8.61	1.48	17.49	6.51	10.33	4.63	15.35	0.90	1.26	0.67	0.30	0.21	0.81
44	E6_Aa	NovelBoundary	0	20.82	10.00	44.82	36.96	20.37	20.67	10.25	17.99	9.87	20.17	17.21	0.00	6.82	9.54	20.89	33.50	58.91	58.86	36.80	27.74	5.56	0.00	16.30
45	ER6a	ExonRegion	0	18.30	4.13	50.46	69.43	16.45	33.98	23.40	97.56	83.88	45.44	507.61	25.85	345.13	205.74	358.73	91.52	453.29	6.85	14.90	8.01	6.09	13.54	22.02
46	E6a_E7a	KnownJunction	0	28.82	6.64	26.99	35.49	27.50	20.73	13.87	73.07	71.06	40.80	574.88	31.06	410.36	194.66	367.02	74.68	557.46	6.67	14.40	6.52	5.68	2.94	11.95
47	ER6b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	E7_Aa	NovelBoundary	0	0.00	0.00	3.61	18.85	3.90	11.58	0.00	4.35	6.34	9.37	18.37	0.00	21.59	9.54	25.71	0.00	34.41	1.70	0.00	6.20	0.00	0.00	0.00
49	ER7a	ExonRegion	0	22.22	4.80	42.77	49.83	56.19	42.84	11.09	79.09	66.23	52.55	483.19	26.32	319.77	165.50	266.16	66.22	454.86	12.20	8.28	8.68	7.45	2.13	10.22
50	E7a_E8a	KnownJunction	0	33.64	3.35	37.25	47.98	54.67	55.88	8.97	68.80	53.04	34.03	355.88	6.15	246.41	153.51	231.54	48.02	283.87	7.13	8.85	2.36	0.00	2.63	4.27
51	ER8a	ExonRegion	0	20.37	3.50	50.93	54.22	41.89	33.70	7.28	75.94	48.25	44.23	362.54	14.34	188.77	136.58	190.94	48.48	275.73	8.95	6.67	4.19	0.00	2.21	5.78
52	E8_Da	NovelBoundary	1	0.00	3.35	0.00	2.03	3.82	0.00	4.42	8.83	3.82	5.69	7.21	6.30	46.75	3.00	14.09	4.36	18.61	0.00	0.00	0.00	0.00	0.00	0.00
53	E8a_E9a	KnownJunction	0	14.00	2.96	53.40	46.15	52.29	18.28	4.50	70.44	46.99	35.30	284.55	12.60	170.61	133.26	206.94	39.90	263.49	5.72	4.80	9.33	0.00	2.88	8.62
54	I8	Intron	0	1.88	0.60	0.54	1.20	2.38	0.00	2.36	1.53	2.73	0.51	9.17	2.11	16.52	3.68	10.83	4.41	21.53	0.00	0.00	1.89	0.65	0.00	0.00
55	I8_AR1	ActiveIntronRegion	0	2.42	0.23	0.16	1.45	5.78	0.00	2.11	1.31	1.10	0.26	4.52	1.33	21.71	3.85	17.27	5.75	10.06	0.00	0.00	0.24	1.42	0.00	0.00
56	I8_AR2	ActiveIntronRegion	0	2.12	2.03	1.23	2.73	2.68	0.00	5.30	3.46	2.47	1.15	8.94	7.04	19.35	4.87	21.03	11.89	23.52	0.00	0.00	2.66	2.20	0.00	0.00
57	I8_SR1	SilentIntronRegion	0	1.56	0.72	0.73	0.94	0.27	0.00	2.29	1.52	3.83	0.61	12.28	2.23	13.31	3.51	6.07	2.97	28.97	0.00	0.00	2.90	0.04	0.00	0.00
58	ER9a	ExonRegion	0	30.77	3.91	51.56	60.14	49.06	24.26	11.68	100.12	50.20	34.67	387.87	21.09	340.09	157.54	186.57	74.46	327.13	5.59	3.76	8.07	0.96	8.33	4.59
59	E9_Ab	KnownBoundary	0	65.94	9.14	57.42	83.01	64.01	30.66	20.76	124.45	50.75	32.64	443.64	18.76	582.59	199.01	257.49	94.76	350.63	8.58	4.61	6.07	2.78	17.57	8.19
60	ER9b	ExonRegion	0	24.49	8.37	17.80	22.12	22.97	16.59	8.71	40.48	24.13	19.74	191.17	25.85	234.34	94.25	150.79	35.30	163.35	2.70	3.92	6.27	2.47	4.78	4.54
61	E9_Da	KnownBoundary	0	21.86	2.83	7.86	18.11	32.60	6.76	1.94	28.46	10.73	14.24	82.97	18.31	107.95	66.16	90.61	16.41	66.20	0.00	4.42	2.43	2.41	0.00	0.00
62	ER9c	ExonRegion	0	10.21	0.36	3.95	7.96	12.47	4.88	7.65	11.21	4.20	4.79	51.65	19.93	45.11	44.95	35.33	13.81	44.71	0.00	1.64	1.81	0.26	0.00	4.40
63	IG11	Intergenic	0	1.39	0.19	0.51	1.90	2.50	2.75	1.61	6.52	1.55	1.44	3.44	1.33	31.52	3.15	7.49	3.34	13.90	0.26	0.30	1.00	0.41	0.19	1.92
64	IG11_SR1	SilentIntergenicRegion	0	1.40	0.19	0.52	1.91	2.52	2.77	1.62	6.57	1.56	1.45	3.45	1.34	31.70	3.17	7.55	3.36	14.00	0.26	0.30	1.00	0.42	0.20	1.94