Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PMS2L1 Gene 0 76.19 73.74 93.73 86.35 71.48 60.04 62.52 69.60 49.85 61.56 75.87 42.15 52.83 58.43 70.73 73.88 56.92 63.83 72.12 58.62 17.72 19.51 17.75 2 431037 Transcript 0 0.35 2.37 2.45 2.04 1.34 2.45 1.54 2.02 4.94 1.91 0.00 1.44 0.78 0.54 0.00 0.00 0.55 1.54 0.00 1.77 1.10 0.00 0.00 3 306533 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 423426 Transcript 1 35.58 60.20 61.53 57.42 59.85 22.72 42.21 39.22 23.02 33.87 4.75 13.41 26.97 10.54 22.94 17.83 10.87 21.99 34.35 41.67 4.77 9.49 6.58 5 222396 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 425039 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.30 0.00 0.00 0.00 0.00 0.00 0.00 7 424417 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 418254 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 447708 Transcript 0 5.82 2.98 4.00 6.57 7.47 1.34 8.58 1.84 4.42 3.38 2.82 2.97 9.20 1.82 0.56 1.40 2.34 2.51 1.57 5.06 1.13 0.20 1.04 10 ER1a ExonRegion 1 42.38 91.66 42.60 36.77 77.68 186.60 86.09 49.33 77.04 37.09 30.41 70.01 82.72 14.86 15.65 38.70 33.78 94.43 50.12 138.98 16.39 13.57 17.53 11 E1_Da NovelBoundary 0 13.93 61.30 89.38 62.73 112.82 170.64 71.72 62.51 118.69 54.34 40.17 36.76 19.97 4.94 0.00 8.12 38.15 88.96 21.46 110.13 0.00 16.72 7.51 12 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1_Db NovelBoundary 0 29.56 73.21 56.62 65.76 108.32 188.19 81.13 84.33 148.75 49.29 25.80 12.60 26.95 9.65 4.45 16.15 48.62 140.49 4.80 116.14 7.66 15.86 8.71 14 E1b_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER1b ExonRegion 0 2.12 19.66 19.61 14.99 17.84 36.06 19.42 15.56 33.35 16.06 0.00 11.55 14.07 4.33 0.00 0.00 3.30 16.01 0.00 15.60 7.35 0.00 0.00 16 Ix Intron 0 12.79 12.04 15.01 23.32 11.32 9.31 16.32 15.56 15.35 15.28 30.60 32.96 55.98 6.73 14.75 22.63 30.32 63.40 23.09 60.95 14.37 6.29 13.84 17 Ix_SR1 SilentIntronRegion 0 12.86 12.08 15.14 23.51 11.36 9.29 16.46 15.70 15.47 15.41 30.86 33.28 56.50 6.80 14.89 22.82 30.58 63.99 23.27 61.50 14.51 6.32 13.97 18 ER2a ExonRegion 0 1.06 7.12 7.35 6.13 4.01 7.34 4.63 6.05 14.82 5.73 0.00 4.33 2.35 1.62 0.00 0.00 1.65 4.62 0.00 5.32 3.31 0.00 0.00 19 ER2b ExonRegion 0 0.04 3.60 5.30 2.87 2.10 1.31 1.70 3.67 0.82 2.05 1.69 0.23 0.00 4.70 3.57 0.00 2.77 3.83 0.00 3.00 0.08 0.00 0.00 20 E2_Ac KnownBoundary 0 19.71 9.41 44.74 30.13 4.07 5.39 9.98 41.98 25.81 20.01 17.27 0.00 0.00 7.83 5.69 38.02 16.55 43.94 44.52 14.57 11.68 6.12 23.30 21 ER2c ExonRegion 0 44.62 16.73 7.63 7.14 15.86 30.45 16.21 7.74 6.01 6.50 23.82 1.43 0.01 15.81 24.59 25.63 22.18 11.43 13.11 8.68 4.30 2.62 4.94 22 E2_Ad KnownBoundary 1 689.38 195.62 74.86 87.14 207.98 312.94 204.56 80.05 58.74 72.90 222.27 24.01 0.00 128.67 264.42 283.52 238.34 151.47 149.65 77.60 55.85 31.72 82.97 23 ER2d ExonRegion 1 380.68 136.66 69.98 76.02 187.43 189.86 174.20 58.71 68.86 69.48 164.99 29.49 9.75 143.56 167.00 224.72 163.81 114.76 140.26 79.75 50.75 46.42 73.14 24 E2a_E4b KnownJunction 0 128.32 43.41 64.40 55.70 46.60 22.43 64.52 35.82 61.40 48.70 39.96 5.70 0.00 52.98 25.71 75.62 45.44 83.03 41.22 25.25 11.55 17.39 24.67 25 I2 Intron 0 8.78 10.93 25.45 23.65 22.11 8.58 14.94 13.25 8.00 10.89 6.67 16.81 16.63 6.35 10.65 11.34 9.20 4.97 7.29 15.60 1.39 1.66 3.31 26 I2_SR3 SilentIntronRegion 0 10.62 19.46 25.04 22.23 3.20 13.77 15.16 6.81 7.19 6.81 10.69 19.53 11.59 5.73 12.40 8.10 9.90 1.74 2.62 16.94 0.00 2.04 4.38 27 I2_AR4 ActiveIntronRegion 0 23.30 29.96 83.03 74.04 73.08 23.55 44.16 38.25 27.04 32.23 14.55 57.12 53.00 14.34 28.97 23.80 22.56 8.74 17.40 48.75 3.35 5.01 9.11 28 E3_Aa NovelBoundary 1 96.83 85.25 91.92 146.93 456.03 139.01 269.13 53.68 46.09 45.80 14.37 13.65 39.61 27.02 57.85 39.99 43.85 7.38 32.47 100.54 14.09 11.08 12.21 29 ER3a ExonRegion 0 3.33 0.00 4.47 1.50 1.30 2.10 0.00 0.92 1.60 0.22 0.00 0.00 1.66 0.81 2.09 0.61 0.00 0.27 2.30 2.10 0.00 0.00 0.00 30 E3_Da NovelBoundary 1 44.97 45.52 136.99 183.86 111.04 19.59 40.28 53.36 65.77 54.45 13.64 35.11 57.14 29.49 28.68 31.10 12.53 15.75 52.05 99.58 3.03 4.96 14.51 31 E3a_E4b KnownJunction 0 0.00 0.00 9.34 3.50 4.24 6.98 0.00 2.51 4.37 1.67 0.00 0.00 6.82 2.30 0.00 3.85 0.00 0.00 0.00 6.20 0.00 0.00 0.00 32 E4_Aa NovelBoundary 1 78.46 63.08 108.25 80.51 91.34 42.76 76.71 19.55 36.14 58.91 18.22 24.61 89.77 17.01 15.70 43.41 34.32 20.69 8.09 57.08 5.93 11.33 16.39 33 ER4a ExonRegion 0 7.29 1.02 1.80 2.31 4.16 1.83 6.07 0.91 3.26 3.12 3.87 0.24 8.21 2.75 1.13 2.81 4.68 3.80 1.42 5.02 0.49 0.41 0.73 34 E4_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER4b ExonRegion 1 96.01 39.87 88.73 84.00 42.37 23.12 40.92 54.60 55.07 69.53 161.31 21.38 22.60 43.65 52.88 45.39 146.74 76.40 45.42 69.28 37.53 11.74 13.62 36 E4_Da KnownBoundary 0 183.81 158.20 373.29 249.59 140.24 130.89 152.49 246.53 199.59 211.75 391.89 118.54 140.58 163.99 252.30 288.56 374.94 186.50 174.03 243.46 158.40 56.33 141.62 37 E4a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER4c ExonRegion 1 72.83 51.12 158.59 134.27 56.52 51.50 42.91 138.84 108.35 133.84 310.08 75.02 53.52 215.81 266.80 207.68 228.71 167.08 199.02 153.60 68.62 54.54 53.58 39 E4b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 E5_Ab NovelBoundary 0 133.28 118.73 150.65 156.89 137.61 133.90 86.03 92.25 96.64 119.43 200.16 81.78 101.62 140.97 155.63 280.27 146.14 112.01 215.91 298.62 54.24 84.38 122.24 41 ER5a ExonRegion 0 86.31 78.63 183.94 181.26 66.00 87.41 51.34 178.61 143.55 153.56 192.00 100.54 101.62 222.68 298.51 348.07 167.25 212.08 251.64 135.46 33.06 69.45 101.15 42 ER5b ExonRegion 0 103.82 87.50 268.12 258.56 136.98 198.10 130.12 185.08 140.07 160.83 232.91 155.47 180.45 198.33 228.27 372.54 159.20 249.92 262.51 150.90 47.15 65.15 85.24 43 E5_Da KnownBoundary 0 19.41 9.93 5.14 5.53 35.74 8.12 13.69 2.46 0.00 3.33 0.00 0.00 6.82 0.00 10.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.30 0.00 0.00 0.00 0.00 0.00 0.00 46 ER5c ExonRegion 0 4.35 4.94 6.20 10.83 10.78 0.84 11.08 2.77 5.58 3.64 1.77 5.69 10.18 0.88 0.00 0.00 0.00 1.21 1.73 5.11 1.76 0.00 1.34 47 E5_Db NovelBoundary 1 27.93 26.90 54.64 71.92 94.23 58.94 77.06 28.18 29.17 28.63 7.37 12.15 51.78 14.19 19.41 24.52 17.58 3.86 0.00 26.01 2.59 0.00 8.62 48 ER6a ExonRegion 0 103.63 178.26 267.33 196.80 149.74 214.02 207.87 217.10 144.60 185.66 345.24 173.47 136.47 209.05 211.85 219.45 198.82 184.56 174.02 122.10 51.90 54.92 24.58 49 E6a_E7a KnownJunction 0 87.72 65.12 190.65 210.03 91.68 78.70 66.46 174.89 80.64 94.69 60.23 39.46 56.00 68.57 106.31 131.08 67.41 86.89 87.06 56.31 8.53 12.37 20.83 50 E6a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 E7_Aa NovelBoundary 1 6.45 8.55 23.21 23.91 7.81 41.34 11.31 21.36 10.94 4.89 4.74 0.00 27.60 12.13 6.30 23.93 13.28 3.86 0.00 15.15 3.09 0.00 7.60 52 ER7a ExonRegion 0 239.05 125.51 290.89 261.75 135.58 107.14 115.56 200.49 140.53 180.47 284.44 176.92 222.45 235.32 234.39 276.50 171.54 204.87 227.22 106.98 51.10 64.45 45.98 53 E7_Da NovelBoundary 0 29.93 24.07 43.17 58.07 19.61 36.85 49.82 30.11 10.71 15.93 2.63 24.31 6.49 12.77 35.35 20.76 21.32 13.64 0.00 17.32 0.00 3.12 3.33 54 E7a_E8a KnownJunction 0 69.57 75.38 120.43 79.34 101.19 69.96 101.71 96.69 59.06 47.71 87.60 76.83 80.19 81.76 61.19 112.71 68.54 61.89 124.80 55.10 25.14 15.80 8.45 55 E7a_E9a NovelJunction 0 85.57 2.83 8.72 8.32 19.95 5.56 6.40 6.78 3.39 10.40 10.11 0.00 25.49 21.90 10.14 37.68 16.74 6.80 28.24 2.43 0.00 24.31 17.16 56 E7a_E10a KnownJunction 0 3.33 0.00 2.72 0.00 7.47 7.95 0.00 0.00 0.00 0.00 0.00 6.30 6.82 4.77 4.82 12.05 0.00 0.00 4.80 6.07 0.00 5.45 0.00 57 I7 Intron 0 6.27 9.37 18.63 23.12 13.03 8.57 15.25 15.59 11.75 13.28 7.38 11.97 16.68 8.21 12.18 15.06 11.30 14.39 11.95 16.52 3.48 0.69 5.80 58 I7_AR1 ActiveIntronRegion 0 9.04 10.32 6.83 14.10 21.43 13.22 14.52 6.88 5.90 10.50 2.06 15.23 30.42 3.95 9.62 11.90 7.05 6.64 2.55 7.95 0.00 0.00 4.70 59 ER8a ExonRegion 0 98.62 103.39 124.12 123.07 79.67 92.97 69.02 111.48 84.82 104.38 122.97 52.54 93.12 87.21 93.30 90.03 68.69 66.42 94.88 58.14 32.73 29.64 16.46 60 E8_Da NovelBoundary 0 57.05 52.29 101.62 130.72 88.20 43.04 75.43 59.11 55.01 108.39 19.37 41.26 19.80 4.77 6.30 50.59 18.05 49.66 29.27 43.46 5.50 0.00 12.12 61 E8a_E9a KnownJunction 1 438.30 233.45 83.02 112.61 181.92 177.40 71.01 109.13 99.56 97.03 221.32 48.77 196.42 90.41 165.28 155.77 105.47 96.75 164.71 90.31 46.02 51.01 28.08 62 E8a_E10a NovelJunction 0 6.52 0.00 0.00 1.93 4.33 5.79 1.90 0.00 1.79 3.01 2.42 0.00 6.82 4.89 10.75 0.00 0.00 2.53 9.60 0.00 0.00 0.00 0.00 63 ER9a ExonRegion 0 71.05 57.53 55.06 50.05 43.56 53.97 29.68 65.70 46.35 44.20 66.45 41.99 45.54 49.26 65.45 49.06 45.89 42.94 55.69 32.12 16.90 22.27 10.86 64 E9_Da KnownBoundary 0 95.79 63.48 27.29 42.02 42.53 35.83 8.92 31.59 32.78 22.62 13.42 12.60 27.11 27.08 39.31 28.45 21.97 25.62 66.17 39.69 12.60 8.88 12.04 65 ER9b ExonRegion 0 17.26 18.50 3.99 9.42 13.73 15.06 9.46 7.88 5.13 6.04 5.40 8.79 7.04 12.21 9.48 10.55 5.06 7.82 9.53 4.32 1.19 4.15 3.11 66 E9_Db NovelBoundary 1 64.09 118.40 174.83 183.59 312.99 184.44 194.67 134.76 128.67 132.19 52.12 61.97 176.12 89.35 153.04 104.33 59.00 151.89 124.62 128.15 55.11 5.33 44.82 67 Ix Intron 1 7.31 12.77 33.34 40.54 22.56 12.01 14.78 27.04 14.61 22.77 3.47 1.28 8.44 3.20 14.27 12.53 8.14 26.25 21.72 18.99 3.75 0.75 5.53 68 Ix_SR1 SilentIntronRegion 0 7.86 11.27 36.75 45.60 23.29 10.67 15.19 28.42 15.61 24.92 1.93 0.99 9.70 1.13 15.27 13.18 7.50 29.13 23.31 19.70 3.78 0.69 5.53 69 Ix Intron 0 3.79 5.62 16.78 15.53 9.36 6.10 7.22 9.64 8.23 11.96 0.79 0.54 1.01 1.40 4.64 7.49 3.49 18.74 15.29 11.25 2.69 0.68 4.54 70 Ix_SR1 SilentIntronRegion 0 3.80 5.64 16.84 15.58 9.39 6.12 7.24 9.67 8.25 11.99 0.79 0.54 1.01 1.41 4.65 7.52 3.50 18.80 15.34 11.29 2.70 0.68 4.55 71 Ix_AR1 ActiveIntronRegion 0 5.89 6.13 36.83 38.14 8.68 4.25 10.74 40.60 22.19 26.15 0.45 0.83 0.00 3.48 6.17 5.51 3.83 23.84 7.38 10.85 2.03 0.00 2.04 72 Ix_AR2 ActiveIntronRegion 0 31.98 36.68 3.68 14.99 44.60 13.79 24.62 12.10 6.18 21.79 1.29 0.00 7.47 10.71 23.00 16.40 12.23 7.32 44.48 25.37 5.39 0.00 6.85 73 Ix_SR1 SilentIntronRegion 0 20.00 13.94 0.62 2.25 4.05 4.32 5.74 3.15 1.01 3.82 1.12 0.00 3.58 2.69 4.90 5.55 0.94 2.33 11.77 4.58 1.23 0.46 1.76 74 I9 Intron 0 18.36 37.31 49.38 62.61 42.88 14.88 38.73 33.61 25.30 32.24 5.01 14.58 18.01 6.48 12.33 17.82 9.89 28.64 31.23 34.48 6.70 4.93 13.10 75 I9_AR1 ActiveIntronRegion 0 26.46 68.60 41.86 67.59 69.25 25.77 60.29 33.83 25.22 35.21 12.20 24.64 40.65 14.70 25.19 31.68 20.90 30.16 34.89 62.99 13.16 16.05 41.36 76 I9_SR1 SilentIntronRegion 0 16.38 29.62 51.26 61.42 36.41 12.21 33.44 33.57 25.34 31.52 3.24 12.11 12.45 4.45 9.18 14.41 7.19 28.28 30.34 27.47 5.12 2.19 6.15 77 E10_Aa NovelBoundary 1 54.97 102.28 283.61 331.59 252.46 103.69 152.27 159.49 97.80 126.73 17.58 17.56 39.93 19.37 84.93 64.34 33.47 160.76 157.93 156.34 26.50 5.63 24.16 78 ER10a ExonRegion 1 67.83 120.40 120.35 114.83 112.24 37.50 84.42 78.44 46.05 67.73 9.50 20.53 47.12 16.30 41.07 23.62 21.74 43.98 63.90 77.28 9.54 13.54 13.15 79 IG10_SR2 SilentIntergenicRegion 0 44.80 39.18 90.50 82.59 47.13 37.15 49.76 49.90 36.32 40.19 10.15 12.00 20.43 5.83 23.91 23.10 22.56 38.56 59.29 60.53 6.13 1.61 18.13 80 IG10_AR2 ActiveIntergenicRegion 0 7.73 10.00 49.24 45.87 17.43 10.55 21.55 31.64 25.05 34.18 2.12 5.92 3.04 2.58 8.17 8.19 8.83 29.16 25.90 27.69 4.73 1.83 4.19