Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC007566.2 Gene 0 18.63 13.61 8.24 33.27 30.97 27.49 17.74 28.88 45.55 29.35 15.48 19.33 35.67 18.71 15.56 10.38 8.65 8.82 16.68 33.44 17.16 15.76 15.38 2 427458 Transcript 0 23.29 12.83 4.15 20.89 33.58 20.93 14.31 21.01 26.65 20.89 11.78 13.12 24.29 12.39 12.56 6.61 6.08 7.91 13.18 20.67 18.12 11.28 12.57 3 441539 Transcript 0 6.87 0.00 1.98 9.61 0.00 7.01 2.84 0.12 4.71 1.15 1.88 3.64 1.74 2.64 0.00 0.00 0.03 0.08 0.08 3.10 0.08 0.18 0.18 4 ER1a ExonRegion 0 49.41 11.58 4.24 3.93 31.29 17.49 16.86 4.59 4.18 0.71 2.90 0.00 16.60 7.62 9.71 9.37 5.21 2.70 10.05 2.13 8.81 13.78 14.80 5 I1 Intron 0 31.28 42.31 22.85 39.34 45.38 29.53 25.11 29.42 29.53 27.67 6.32 11.75 26.75 9.54 10.25 6.48 6.82 14.09 19.93 30.10 8.91 9.44 8.09 6 I1_AR1 ActiveIntronRegion 0 32.02 41.42 26.36 42.61 47.14 33.56 26.72 26.87 29.74 29.62 9.27 16.49 34.15 11.79 15.89 6.74 6.56 14.44 25.45 30.98 13.07 16.33 9.81 7 I1_SR1 SilentIntronRegion 0 20.38 38.84 21.53 46.17 53.10 31.06 28.61 32.99 33.27 27.81 5.47 11.09 38.67 6.10 7.62 5.78 8.23 12.55 14.95 33.20 3.78 3.81 5.70 8 I1_AR2 ActiveIntronRegion 0 32.85 53.20 30.19 61.87 32.75 23.77 34.26 27.86 35.87 29.09 9.43 9.52 31.33 6.24 6.73 9.51 9.90 29.42 14.02 42.72 2.20 0.58 10.34 9 I1_AR3 ActiveIntronRegion 0 35.28 52.87 20.42 62.24 30.77 23.84 30.23 30.54 34.79 29.63 7.73 4.33 29.70 8.39 8.70 7.43 5.50 30.80 12.74 43.26 4.04 4.17 16.15 10 I1_AR4 ActiveIntronRegion 0 49.51 49.49 26.10 40.28 51.83 28.61 22.64 37.77 34.26 32.20 4.68 6.97 8.88 8.95 6.98 7.06 8.78 21.16 20.93 31.29 9.86 6.54 9.93 11 I1_SR2 SilentIntronRegion 0 19.96 38.75 10.19 16.42 22.14 18.35 18.09 19.83 16.29 15.79 1.49 6.86 13.27 9.67 3.68 5.72 2.54 3.71 11.65 20.06 4.67 4.01 3.96 12 E2_Aa NovelBoundary 0 68.16 76.76 28.74 54.90 61.12 66.10 57.28 37.17 46.47 35.83 4.32 0.00 40.09 17.13 14.09 19.65 0.00 50.32 56.10 33.68 22.36 0.00 8.02 13 ER2a ExonRegion 1 54.09 26.59 10.78 39.54 76.52 57.88 33.04 47.27 57.06 43.26 19.79 9.88 53.27 29.85 29.39 15.70 15.72 18.60 26.83 48.43 42.80 14.97 32.56 14 E2_Da NovelBoundary 0 0.00 9.08 20.34 16.85 21.14 7.78 15.02 9.98 4.75 2.93 0.00 5.55 0.00 2.24 0.00 4.36 0.00 10.69 0.00 13.68 2.90 0.00 0.00 15 E2a_E3a KnownJunction 0 34.23 29.21 6.21 58.20 79.54 53.04 19.92 54.96 78.21 67.40 35.96 23.86 42.21 26.78 36.71 11.54 13.93 20.77 33.88 48.39 60.79 30.80 22.37 16 E2a_E6a NovelJunction 0 3.78 3.09 9.14 33.76 24.87 50.14 17.62 20.09 18.72 30.19 0.00 6.30 7.47 2.47 14.71 0.00 4.49 9.66 13.84 20.07 3.15 4.96 4.10 17 E3_Aa NovelBoundary 0 0.00 0.00 4.64 14.95 12.99 0.00 11.39 4.60 6.77 1.18 5.16 6.30 0.00 0.00 4.45 3.50 4.68 11.07 4.80 22.88 2.90 0.00 0.00 18 ER3a ExonRegion 0 23.86 20.22 4.33 24.47 43.67 24.69 12.72 29.38 41.60 25.15 24.04 28.49 37.59 23.09 16.82 15.12 6.46 11.19 23.73 18.04 30.85 11.75 11.79 19 E3_Da NovelBoundary 0 17.93 25.13 7.07 12.85 14.43 11.36 8.79 10.64 9.81 11.07 2.58 0.00 5.84 9.48 8.90 7.86 4.68 12.39 16.19 34.90 8.59 0.00 0.00 20 E3a_E4a KnownJunction 0 7.56 0.00 0.00 1.66 19.95 0.00 4.77 2.55 5.01 2.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.78 0.00 0.00 0.00 0.00 0.00 21 E3a_E6a NovelJunction 0 51.19 6.71 1.15 25.50 65.62 2.16 11.00 33.56 57.61 34.63 19.95 55.52 33.76 34.79 19.28 8.72 9.07 15.92 27.20 14.19 17.98 9.00 7.60 22 I3 Intron 0 7.93 15.83 7.46 14.33 13.67 9.01 14.69 8.15 8.24 8.23 3.58 6.02 12.38 5.52 6.91 4.34 5.62 8.14 11.16 23.09 8.05 1.01 3.14 23 I3_SR1 SilentIntronRegion 0 7.61 17.49 6.91 15.36 16.11 8.10 13.17 6.95 8.69 9.98 3.35 6.64 13.62 5.94 5.07 4.11 4.48 9.49 11.95 23.53 7.16 1.27 2.18 24 I3_AR1 ActiveIntronRegion 0 9.38 11.74 9.95 14.27 10.58 10.19 19.09 11.56 8.67 5.64 5.19 5.84 10.47 5.71 12.84 4.65 8.06 6.75 11.17 24.01 12.56 0.80 5.55 25 I3_SR2 SilentIntronRegion 0 6.39 15.66 4.85 8.25 6.39 11.70 13.28 7.15 4.47 3.92 1.06 2.73 9.46 2.49 3.74 4.98 6.66 3.33 6.40 18.21 2.50 0.00 3.15 26 E4_Aa NovelBoundary 0 6.37 33.15 6.77 26.17 23.51 12.10 47.17 19.14 7.12 7.82 2.47 18.16 20.29 9.95 8.90 3.67 9.26 2.32 12.42 44.10 2.66 0.00 0.00 27 ER4a ExonRegion 0 3.99 3.60 2.07 12.36 7.08 4.36 11.75 7.09 5.53 6.54 4.92 12.05 25.16 4.23 7.85 0.14 1.88 5.10 4.34 21.08 0.03 1.66 6.57 28 E4_Da NovelBoundary 0 16.82 20.85 4.91 22.37 16.98 0.00 10.33 9.61 10.45 2.28 5.21 12.60 26.62 2.47 4.45 8.03 0.00 4.73 9.04 26.21 0.00 0.00 0.00 29 E4a_E6a KnownJunction 0 3.78 0.00 0.00 8.89 0.00 0.00 9.01 7.11 7.73 3.52 2.68 15.00 6.66 2.12 0.00 0.00 0.00 2.57 4.14 5.56 0.00 5.94 3.67 30 Ix Intron 0 10.34 23.46 9.40 30.09 34.64 22.79 25.54 11.11 16.46 13.15 2.41 9.22 17.10 5.12 4.47 3.71 3.78 4.21 4.47 19.03 1.26 3.25 1.53 31 Ix_AR1 ActiveIntronRegion 0 8.67 18.93 2.72 18.15 27.89 12.29 27.11 3.84 6.84 5.09 1.44 4.27 13.04 2.92 3.81 2.21 1.23 0.00 2.37 9.50 0.00 1.55 0.00 32 Ix_SR1 SilentIntronRegion 0 10.64 24.26 10.51 32.11 35.81 24.55 25.34 12.32 18.06 14.49 2.58 10.05 17.80 5.49 4.59 3.96 4.20 4.91 4.82 20.62 1.47 3.53 1.78 33 E5_Aa NovelBoundary 1 69.42 41.57 28.95 34.93 56.45 81.94 36.13 59.11 41.61 25.73 4.74 25.06 78.40 18.60 9.64 4.36 8.79 6.88 3.95 33.62 0.00 9.25 4.35 34 ER5a ExonRegion 0 3.14 0.00 0.00 5.19 0.00 3.35 1.58 0.24 2.64 0.65 1.07 0.97 3.48 0.92 0.00 0.00 0.06 0.16 0.16 2.93 0.15 0.36 0.35 35 E5_Da NovelBoundary 0 10.15 27.30 29.89 74.02 38.37 57.81 24.20 62.56 45.89 52.22 12.48 29.71 81.98 6.95 32.02 39.39 16.36 6.47 12.99 29.91 3.15 77.09 16.13 36 E5a_E6a KnownJunction 0 10.59 0.00 3.96 14.02 0.00 10.68 4.11 0.00 6.77 1.64 2.68 6.30 0.00 4.36 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 37 Ix Intron 0 23.26 36.51 12.04 28.13 44.32 32.39 28.82 24.54 28.46 19.79 9.63 23.48 42.59 14.31 12.42 11.11 9.93 8.29 10.74 28.38 4.36 10.84 3.87 38 Ix_SR1 SilentIntronRegion 0 23.33 36.62 12.08 28.20 44.44 32.48 28.90 24.61 28.54 19.84 9.66 23.54 42.70 14.34 12.45 11.14 9.96 8.31 10.77 28.46 4.37 10.87 3.88 39 E6_Aa NovelBoundary 1 6.67 25.59 9.28 29.30 58.74 43.21 49.42 39.47 15.89 24.52 15.58 55.07 81.33 20.72 0.00 19.57 9.26 4.60 28.05 32.47 5.31 4.65 15.71 40 ER6a ExonRegion 0 12.84 14.03 11.92 47.30 29.35 32.33 20.04 37.52 67.17 40.60 19.82 26.91 42.34 23.70 18.10 13.36 10.98 9.36 20.35 44.47 16.83 23.70 16.97 41 ER6b ExonRegion 0 9.42 11.41 5.57 18.07 10.62 10.00 6.45 15.11 13.87 17.61 3.93 15.64 12.86 5.40 0.00 1.05 5.43 0.54 2.47 21.76 1.64 11.36 8.81