Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC004967.3 Gene 0 6.28 6.03 5.00 5.80 9.77 3.98 7.40 11.17 3.36 3.51 2.43 13.80 22.44 4.73 8.49 9.16 7.53 2.41 4.00 6.55 1.26 1.19 1.68 2 453589 Transcript 0 5.11 2.99 2.83 3.62 6.32 2.41 4.08 9.37 2.41 2.07 2.18 6.47 12.19 3.84 5.93 7.40 8.18 1.74 2.69 4.05 1.22 0.80 0.90 3 ER1a ExonRegion 0 0.90 0.02 0.52 0.00 0.07 1.34 0.01 1.05 0.66 0.00 0.14 0.00 0.55 1.56 0.17 0.67 0.06 0.00 0.03 0.11 0.18 0.59 0.00 4 E1a_E2a KnownJunction 0 0.00 0.00 1.66 1.60 0.00 2.16 0.00 0.00 0.00 1.02 0.00 0.00 6.82 7.53 0.00 7.60 0.00 0.00 0.00 0.00 2.41 2.94 0.00 5 Ix Intron 0 30.91 38.47 45.04 33.87 34.92 15.92 19.34 37.18 13.44 29.48 14.89 29.40 30.98 24.91 34.41 36.26 23.92 34.44 36.45 30.10 8.36 7.67 13.17 6 Ix_SR2 SilentIntronRegion 0 2.40 2.96 16.66 4.83 2.54 1.21 0.22 5.48 3.94 3.89 0.07 0.00 10.17 12.19 18.05 27.00 1.79 12.09 15.28 8.40 2.99 3.53 3.04 7 Ix_AR3 ActiveIntronRegion 0 32.79 35.11 50.59 38.27 26.05 17.51 11.82 43.96 16.59 37.26 16.86 17.38 21.52 22.19 37.98 38.29 22.59 45.06 36.99 32.18 10.34 6.38 12.58 8 Ix_SR1 SilentIntronRegion 0 53.90 124.96 26.04 23.35 76.04 21.55 32.08 19.68 9.47 16.19 10.21 40.34 57.22 52.24 70.94 63.50 31.91 22.23 77.40 34.40 10.28 12.05 31.96 9 Ix_AR2 ActiveIntronRegion 0 35.59 38.79 46.95 39.82 53.30 19.56 33.37 52.40 12.45 34.18 19.25 47.12 48.64 28.21 28.98 28.79 29.84 22.90 30.44 34.49 5.53 12.40 11.42 10 Ix_AR1 ActiveIntronRegion 0 21.89 27.55 45.59 29.70 37.22 10.46 28.78 18.34 10.50 15.85 11.72 53.77 37.39 23.58 21.67 31.80 27.08 29.84 34.08 25.80 7.07 5.94 13.62 11 E2_Aa NovelBoundary 0 15.56 28.02 43.67 63.00 38.62 11.30 22.26 35.24 10.30 33.58 4.00 32.11 13.31 11.77 25.96 23.58 26.46 34.78 4.71 35.41 8.40 2.33 0.00 12 ER2a ExonRegion 0 4.15 1.99 0.60 0.24 10.44 6.00 10.38 0.61 0.31 0.00 1.63 3.48 17.56 8.73 9.78 7.58 9.58 0.00 9.31 12.31 3.98 0.69 0.00 13 E2_Da NovelBoundary 0 65.05 49.46 65.76 28.23 40.07 18.11 26.63 55.45 11.46 25.84 13.85 23.86 78.57 27.19 68.11 28.88 35.53 24.87 31.15 32.21 7.72 0.00 19.72 14 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E3_Aa NovelBoundary 0 43.34 88.73 17.77 32.43 74.45 24.25 38.73 35.94 10.85 23.75 9.69 37.81 33.11 9.83 15.08 15.21 33.10 10.57 17.22 27.74 5.62 9.31 4.35 16 ER3a ExonRegion 0 4.56 0.07 1.23 4.96 6.23 1.36 0.87 13.53 2.96 0.97 3.03 10.30 31.70 9.30 16.56 13.99 9.85 2.10 5.00 4.22 1.44 0.00 5.01 17 E3_Da NovelBoundary 0 24.30 39.14 47.13 49.04 22.33 5.39 16.91 46.66 21.35 17.38 7.42 19.96 15.10 4.77 15.82 6.92 3.83 14.88 4.71 14.32 0.00 2.45 3.93 18 E3a_E4a KnownJunction 0 18.37 0.00 1.54 8.62 15.87 2.33 2.25 39.39 7.44 2.63 7.53 0.00 0.00 4.65 14.09 20.51 27.86 4.15 4.05 6.20 2.72 0.00 0.00 19 E4_Aa NovelBoundary 0 12.74 16.84 42.70 39.52 15.20 12.44 12.85 44.57 6.83 24.20 10.53 0.00 0.00 4.71 0.00 0.00 8.13 2.28 0.00 6.26 0.00 0.00 0.00 20 ER4a ExonRegion 0 19.34 26.72 19.58 24.34 36.81 12.13 27.89 38.01 12.25 14.67 6.05 57.20 74.49 8.59 24.63 25.10 19.31 9.26 9.12 21.75 2.70 4.52 4.87 21 E4a_E5a KnownJunction 0 3.56 3.03 2.93 0.00 0.00 0.00 2.08 3.53 1.79 1.67 2.42 0.00 0.00 0.00 0.00 0.00 16.92 2.49 0.00 0.00 0.00 0.00 0.00 22 Ix Intron 0 10.71 7.29 1.54 3.85 16.35 10.43 6.70 2.71 2.33 2.16 5.30 23.35 23.66 4.09 9.42 9.40 7.65 1.75 7.38 9.86 1.39 0.44 3.09 23 Ix_AR2 ActiveIntronRegion 0 13.16 9.15 1.85 4.87 19.14 12.78 8.37 3.38 2.95 2.74 6.64 29.47 29.59 4.98 11.65 11.66 9.70 2.22 9.36 12.44 1.77 0.56 3.92 24 ER5a ExonRegion 0 5.32 1.02 3.03 0.04 0.07 1.18 1.41 5.19 1.11 1.77 3.15 0.23 3.02 1.65 0.00 5.98 6.38 1.14 2.14 0.00 0.00 0.00 0.00 25 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 Ix Intron 0 15.03 15.75 19.80 25.70 29.71 10.65 19.49 21.28 7.84 16.33 12.23 50.24 60.80 20.53 21.22 29.56 18.75 12.57 13.16 27.75 5.12 5.92 11.00 27 Ix_SR1 SilentIntronRegion 0 15.10 15.82 19.90 25.83 29.86 10.70 19.58 21.39 7.88 16.41 12.29 50.50 61.11 20.61 21.32 29.69 18.85 12.63 13.23 27.89 5.14 5.94 11.04 28 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00