Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	ATP5J2	Gene	0	52.64	75.03	263.54	139.38	634.99	554.53	266.05	143.85	85.31	131.64	433.78	70.72	43.36	231.53	485.10	398.68	342.91	221.99	367.30	183.53	204.87	212.21	154.78
2	292475	Transcript	0	1.80	13.58	5.57	2.15	5.97	16.91	5.00	0.58	5.92	1.79	3.75	0.00	5.40	5.09	3.24	0.16	2.31	5.87	4.47	5.73	4.11	0.01	1.03
3	485011	Transcript	0	34.27	42.46	70.86	47.29	70.69	67.46	61.94	43.01	23.77	32.60	26.15	17.46	16.13	27.98	40.26	31.96	28.05	39.38	24.93	41.80	8.84	12.74	16.71
4	394186	Transcript	0	4.08	0.87	5.91	2.14	3.25	2.75	6.34	5.62	0.71	4.92	2.76	0.00	2.51	3.07	10.57	0.64	3.42	3.30	2.73	7.37	0.24	1.79	2.94
5	488775	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	449683	Transcript	0	0.00	0.00	0.00	0.00	0.00	2.78	2.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00
7	414062	Transcript	0	0.00	0.00	0.00	2.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.67	0.00	0.00	3.95	0.00	0.00	2.94	0.00
8	466753	Transcript	0	9.81	11.55	24.16	19.99	11.41	17.56	21.07	13.69	12.89	13.67	7.42	4.59	4.26	7.08	10.73	16.04	12.87	32.94	21.09	26.07	10.48	6.60	12.46
9	359832	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
10	481899	Transcript	0	29.85	27.11	39.67	27.77	41.34	34.18	32.25	17.88	10.16	17.65	19.26	10.56	7.24	18.67	21.18	23.54	12.29	20.06	12.09	21.47	4.66	10.64	12.54
11	491560	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
12	ER1a	ExonRegion	0	1.80	13.58	5.57	2.15	5.97	16.91	5.00	0.58	5.92	1.79	3.75	0.00	5.40	5.09	3.24	0.16	2.31	5.87	4.47	5.73	4.11	0.01	1.03
13	E1_Ab	KnownBoundary	0	0.00	0.00	2.54	0.00	0.00	5.34	4.42	2.42	1.13	0.00	4.53	0.00	0.00	0.00	0.00	0.00	0.00	2.16	0.00	3.13	2.84	0.00	0.00
14	E1_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	4.24	2.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	E1_Ad	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	5.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.05	0.00	0.00
16	E1_Ae	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E1_Af	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER1b	ExonRegion	0	4.23	8.13	11.03	1.36	8.03	49.51	19.86	1.73	2.47	0.00	13.53	0.00	0.00	6.50	8.70	8.92	0.00	9.24	3.19	8.51	17.63	2.08	0.00
19	ER1c	ExonRegion	0	11.52	10.85	26.21	6.28	66.60	161.99	84.15	5.28	3.84	6.24	40.59	0.00	0.00	24.00	52.54	34.51	12.47	17.86	27.43	17.85	25.34	9.26	7.83
20	ER1d	ExonRegion	1	43.39	28.47	88.23	28.62	280.95	449.28	232.36	24.20	24.70	27.53	189.42	0.00	0.00	60.09	240.80	200.62	82.52	78.53	133.79	39.36	71.62	48.96	67.54
21	ER1e	ExonRegion	1	44.45	30.50	91.90	31.35	291.66	480.46	242.28	29.38	27.17	28.67	197.16	0.00	0.00	64.96	252.41	205.08	82.52	81.30	133.79	40.43	72.72	54.17	76.35
22	ER1f	ExonRegion	1	401.71	652.37	1305.76	675.25	7126.74	7585.43	3510.88	689.46	361.71	554.97	3304.98	20.53	1.61	2082.31	5480.80	3230.53	2607.33	1303.61	2934.63	1640.06	1550.03	2193.11	1266.62
23	E1a_E2c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	2.78	2.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00
24	E1a_E2d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	E1a_E3a	NovelJunction	0	0.00	0.00	3.37	0.00	0.00	5.79	2.25	2.30	3.24	0.00	13.16	0.00	0.00	4.94	15.20	4.36	23.00	0.00	18.82	3.26	12.60	9.37	0.00
26	E1a_E5a	NovelJunction	0	0.00	0.00	0.00	1.86	4.33	28.90	4.50	0.00	2.75	1.50	2.68	0.00	0.00	0.00	0.00	8.72	10.10	2.07	4.80	0.00	0.00	9.37	4.35
27	E1b_E2d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	E1b_E5a	KnownJunction	0	3.04	0.00	0.00	0.00	0.00	4.32	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER1g	ExonRegion	1	301.02	344.01	646.86	240.47	5355.21	4325.12	2083.77	341.47	200.84	300.17	1764.20	17.08	7.82	1411.81	2271.52	1788.72	1294.32	813.93	1674.44	866.19	746.81	971.50	525.33
30	Ix	Intron	0	16.20	11.90	18.15	18.67	28.48	16.90	23.26	23.17	11.74	16.28	16.15	13.79	11.56	15.89	20.83	26.27	19.02	19.19	14.78	20.68	10.17	10.17	19.05
31	Ix_AR3	ActiveIntronRegion	0	15.67	12.32	15.68	12.99	30.18	16.37	16.04	14.74	8.67	12.65	10.40	18.69	16.67	14.70	16.89	16.01	10.00	13.61	8.58	18.62	7.42	9.82	15.32
32	Ix_SR2	SilentIntronRegion	0	15.51	14.71	21.89	22.03	39.97	22.16	27.84	27.70	13.31	16.26	20.05	18.15	18.30	19.14	22.34	27.15	27.01	18.09	11.52	20.65	8.38	9.71	20.12
33	Ix_SR1	SilentIntronRegion	0	1.34	6.89	4.64	11.17	20.38	11.25	25.50	3.82	3.51	2.89	6.95	3.83	4.09	7.06	6.61	28.92	9.78	8.94	20.90	6.30	3.26	1.76	34.80
34	Ix_AR1	ActiveIntronRegion	0	29.50	15.83	24.50	29.51	31.74	21.34	26.69	38.57	18.14	27.62	22.21	17.68	11.55	21.05	28.93	33.71	25.20	30.03	21.73	25.87	16.17	14.83	21.33
35	E2_Aa	NovelBoundary	0	71.86	30.92	40.77	26.10	54.58	43.10	48.84	33.02	27.81	31.08	25.32	30.46	13.47	37.02	77.76	33.50	56.10	30.22	41.32	62.06	5.62	27.86	31.07
36	ER2a	ExonRegion	0	5.56	4.94	5.71	8.02	12.92	9.48	7.87	5.48	4.59	4.10	10.22	3.46	2.68	7.01	10.11	11.21	8.02	7.02	1.00	12.16	1.39	9.70	12.08
37	E2_Ab	KnownBoundary	0	20.52	12.10	23.09	27.00	48.30	30.49	23.67	24.44	18.11	14.05	31.64	12.45	12.01	19.13	17.80	28.28	18.33	23.75	11.48	27.04	5.99	20.82	24.93
38	ER2b	ExonRegion	0	38.96	24.21	29.69	36.54	54.60	28.73	33.64	36.13	24.57	25.44	26.76	30.95	26.92	20.25	34.20	20.31	18.92	17.39	6.42	31.41	10.21	19.10	15.53
39	E2_Ac	KnownBoundary	1	62.68	48.22	18.75	25.30	73.68	13.74	20.01	43.74	17.30	26.86	20.16	43.36	33.11	14.24	36.96	14.10	37.77	9.33	8.38	26.53	14.33	29.15	8.37
40	E2_Ad	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER2c	ExonRegion	1	46.63	87.72	102.24	76.82	424.73	388.70	195.55	68.73	35.45	54.36	185.88	40.99	36.11	108.98	253.18	182.79	160.09	94.30	154.91	121.13	95.42	139.67	74.79
42	ER2d	ExonRegion	0	105.19	260.62	1536.60	742.77	1893.33	2122.53	923.02	811.57	472.06	739.57	2285.17	262.76	190.84	841.37	1882.67	2151.21	1771.69	1282.61	1871.45	794.09	1145.58	1008.48	871.63
43	E2_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E2a_E3a	KnownJunction	1	13.93	29.80	1717.83	569.86	155.35	56.39	35.42	898.54	545.77	994.54	5533.45	272.64	103.56	787.16	1648.81	889.68	4074.80	431.61	1602.49	941.50	2432.17	270.77	314.82
45	E2a_E4a	KnownJunction	1	7.41	2.70	229.62	26.57	0.00	0.00	0.00	34.75	41.43	55.26	99.76	6.30	0.00	11.89	20.40	7.60	96.12	30.43	4.05	90.63	38.86	23.33	0.00
46	ER2e	ExonRegion	0	34.27	42.46	70.86	47.29	70.69	67.46	61.94	43.01	23.77	32.60	26.15	17.46	16.13	27.98	40.26	31.96	28.05	39.38	24.93	41.80	8.84	12.74	16.71
47	E2_Db	NovelBoundary	0	52.38	25.52	57.30	36.66	30.81	52.13	22.88	38.03	24.10	31.94	17.37	11.85	6.82	32.79	39.68	20.08	23.09	26.65	15.81	33.88	12.05	3.00	7.68
48	Ix	Intron	0	34.35	25.14	64.20	26.68	27.40	38.61	34.78	30.35	16.00	24.76	32.11	13.92	4.53	23.48	31.29	35.02	16.58	27.85	16.61	33.70	13.20	9.26	18.15
49	Ix_AR1	ActiveIntronRegion	0	34.48	25.22	64.45	26.78	27.50	38.76	34.92	30.47	16.06	24.86	32.23	13.98	4.55	23.57	31.41	35.16	16.64	27.96	16.68	33.83	13.25	9.29	18.22
50	E3_Aa	NovelBoundary	0	81.27	62.55	74.95	65.63	93.63	77.85	41.95	30.56	24.04	29.09	22.22	0.00	6.82	29.49	39.68	77.07	26.46	49.12	26.07	41.67	14.46	9.92	12.12
51	ER3a	ExonRegion	0	68.31	67.72	1624.37	887.25	343.36	200.53	87.44	983.93	545.84	895.84	3262.93	414.56	165.63	1806.33	3895.76	2771.04	2413.55	1373.64	2308.65	1229.15	1426.78	1762.78	951.72
52	E3_Da	KnownBoundary	0	85.79	57.56	91.90	41.82	85.99	92.73	54.50	36.02	21.93	37.55	30.85	31.66	6.66	30.55	22.25	56.22	28.61	39.46	11.20	36.11	8.03	8.21	12.63
53	E3a_E4a	KnownJunction	0	16.52	60.98	1320.30	568.43	1295.33	667.97	148.21	671.56	419.15	645.71	718.08	341.21	123.53	334.22	818.59	906.86	798.22	1416.42	630.51	339.14	392.04	541.86	356.48
54	ER3b	ExonRegion	0	54.13	49.28	73.63	47.52	69.76	58.89	56.62	30.28	15.74	31.21	28.30	17.65	11.80	30.33	32.25	35.87	16.57	33.11	23.17	30.78	7.94	11.58	12.99
55	E3_Db	NovelBoundary	1	95.05	67.42	147.04	108.54	173.85	129.47	96.67	74.34	27.57	57.94	18.69	51.77	26.95	55.74	31.89	14.95	37.31	28.31	30.21	39.82	10.87	5.33	23.82
56	Ix	Intron	0	34.96	28.44	77.28	40.65	40.00	38.47	32.72	34.78	15.09	31.12	23.54	6.54	9.98	24.12	33.58	24.73	18.31	33.23	21.89	29.25	13.02	8.54	14.52
57	Ix_AR1	ActiveIntronRegion	0	35.04	28.51	77.46	40.74	40.10	38.56	32.80	34.86	15.13	31.19	23.59	6.56	10.00	24.18	33.66	24.78	18.35	33.31	21.94	29.32	13.04	8.56	14.55
58	E4_Aa	NovelBoundary	0	45.93	24.47	126.34	89.20	40.83	36.68	22.88	53.40	25.17	65.25	7.63	0.00	0.00	9.83	20.89	8.29	22.53	66.12	18.92	26.40	21.75	20.08	6.74
59	ER4a	ExonRegion	1	212.48	344.85	636.80	264.90	4972.81	3775.80	1648.19	267.89	173.60	283.89	1156.03	377.07	232.54	601.13	1068.51	1033.87	1019.45	455.40	1209.61	308.74	552.78	340.50	414.38
60	E4_Da	KnownBoundary	0	119.58	87.81	31.08	14.35	61.55	40.83	42.18	29.53	10.56	30.60	85.23	5.55	12.50	47.91	48.33	40.33	37.21	15.92	33.79	31.96	29.04	20.45	7.09
61	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	2.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.67	0.00	0.00	3.95	0.00	0.00	2.94	0.00
62	E4_Db	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
63	E4_Dc	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.74	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	ER4b	ExonRegion	0	241.28	150.48	55.14	43.61	141.81	106.36	90.03	32.84	17.29	24.08	148.83	60.61	46.90	211.14	365.56	65.39	118.83	53.58	95.56	68.08	66.11	31.25	29.37
65	ER4c	ExonRegion	0	150.27	101.68	42.89	27.26	96.33	74.27	60.90	28.52	13.59	20.64	121.77	32.47	39.87	142.11	253.86	47.55	85.82	38.80	49.37	48.94	41.87	21.88	16.15
66	ER4d	ExonRegion	0	57.15	32.54	22.55	9.27	33.18	21.27	25.68	19.36	6.92	12.16	44.84	6.06	20.64	44.18	84.72	12.48	21.79	11.09	14.65	25.11	13.66	9.58	7.05
67	ER4e	ExonRegion	0	4.08	0.87	5.91	2.14	3.25	2.75	6.34	5.62	0.71	4.92	2.76	0.00	2.51	3.07	10.57	0.64	3.42	3.30	2.73	7.37	0.24	1.79	2.94
68	Ix	Intron	0	31.91	35.46	76.15	51.26	36.18	31.31	41.21	34.97	19.42	37.25	37.30	11.66	12.28	44.51	39.68	39.77	31.98	56.64	28.39	56.17	32.05	21.87	33.67
69	Ix_AR2	ActiveIntronRegion	0	37.26	30.93	82.31	54.78	35.63	34.28	38.32	34.84	17.55	36.91	36.70	9.95	7.50	42.80	38.00	38.58	35.77	59.65	29.17	53.99	34.71	22.32	33.06
70	Ix_AR1	ActiveIntronRegion	0	21.55	44.42	64.33	44.54	37.35	25.60	46.97	35.33	23.13	38.04	38.57	15.04	21.66	48.00	43.10	42.23	24.67	50.91	26.97	60.63	26.95	21.05	34.97
71	Ix	Intron	0	26.11	44.97	93.68	101.13	42.27	114.50	57.56	140.67	99.96	85.36	35.77	5.06	7.01	55.92	38.74	38.90	36.25	207.66	73.32	111.72	52.04	27.58	38.88
72	Ix_AR2	ActiveIntronRegion	0	27.61	47.16	57.50	63.71	51.08	91.64	35.07	94.33	63.79	69.24	45.51	3.76	7.72	51.54	36.73	42.18	47.52	130.35	64.69	109.76	57.36	28.80	28.33
73	Ix_SR1	SilentIntronRegion	0	26.63	52.98	126.07	138.60	42.04	128.89	62.13	184.83	126.36	107.69	37.48	5.38	9.55	68.91	41.15	48.47	32.89	280.41	92.61	119.99	52.10	26.30	44.20
74	Ix_AR1	ActiveIntronRegion	0	25.14	36.33	80.45	83.44	38.63	113.19	65.25	121.26	92.94	72.02	29.56	5.47	4.16	45.72	37.87	28.02	34.42	175.91	59.11	105.90	50.01	28.68	39.41
75	Ix	Intron	0	10.04	9.07	43.02	21.72	9.33	18.04	27.25	18.41	14.73	21.69	5.30	5.49	11.14	25.03	27.12	27.36	23.59	59.04	25.50	36.74	30.86	14.18	24.01
76	Ix_AR1	ActiveIntronRegion	0	10.81	7.70	49.97	24.42	6.70	19.82	25.46	18.98	15.09	22.95	5.04	4.14	13.71	25.40	29.57	25.80	25.04	75.09	26.17	43.23	33.50	12.92	21.26
77	Ix	Intron	0	9.26	13.47	54.90	34.78	15.55	19.25	33.84	28.81	18.52	34.61	11.23	6.38	6.43	10.41	20.18	24.52	17.74	78.42	34.04	47.07	28.79	7.81	24.78
78	Ix_AR2	ActiveIntronRegion	0	9.88	12.50	55.29	36.06	16.14	18.37	33.16	29.03	19.49	36.38	12.98	4.55	6.44	11.56	19.58	27.41	16.16	84.39	37.35	50.86	25.34	9.96	24.74
79	Ix_SR1	SilentIntronRegion	0	8.55	14.74	54.71	33.39	14.91	20.44	34.86	28.71	17.44	32.62	9.16	8.66	6.46	9.07	21.02	21.12	19.78	71.55	30.18	42.69	33.16	5.23	24.96
80	E5_Aa	NovelBoundary	0	11.26	24.60	68.00	37.96	32.85	33.22	42.48	37.42	35.50	63.02	11.95	17.41	19.64	18.95	8.90	28.88	49.74	98.00	30.68	64.81	51.58	0.00	56.43
81	ER5a	ExonRegion	0	10.11	9.97	54.81	26.46	9.51	18.09	27.08	30.09	17.66	30.32	14.26	4.44	3.53	11.94	17.11	32.88	13.72	69.59	31.97	38.64	20.36	11.02	15.12
82	E5_Da	KnownBoundary	0	18.89	9.47	54.58	36.76	23.77	12.49	28.40	26.33	15.68	20.28	4.74	5.85	0.00	8.48	24.48	10.94	20.48	72.34	0.00	45.83	13.59	10.65	10.41
83	ER5b	ExonRegion	0	16.59	23.10	48.32	39.98	22.82	30.81	42.15	27.38	25.78	27.35	14.85	9.17	8.52	14.17	21.45	28.74	25.73	65.89	42.18	52.14	20.95	13.21	24.92