Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZKSCAN5 Gene 0 36.09 47.15 55.26 57.15 71.44 73.36 54.47 61.13 46.60 66.47 44.85 37.08 27.29 40.97 40.99 44.73 40.33 57.88 42.71 58.75 29.06 23.76 24.95 2 326775 Transcript 0 2.22 6.38 7.72 7.63 13.34 12.55 4.08 18.66 13.53 22.90 4.16 3.15 4.91 2.47 2.38 9.50 6.10 24.70 19.71 27.52 6.56 3.64 12.90 3 451158 Transcript 0 0.00 0.00 0.00 0.00 3.31 0.00 1.68 2.46 0.00 0.00 2.05 0.00 0.00 2.35 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 394170 Transcript 0 0.26 9.06 2.18 1.55 0.65 2.67 2.78 0.31 0.67 3.79 8.11 0.37 1.40 5.12 2.97 13.41 6.32 4.60 12.70 6.22 3.38 2.52 6.03 5 454175 Transcript 0 12.43 13.36 15.92 14.16 22.46 19.93 19.82 14.29 13.43 17.76 15.47 13.17 17.68 22.99 17.55 21.72 21.07 14.81 13.72 20.82 12.31 7.36 11.79 6 439985 Transcript 0 0.00 0.00 0.81 0.51 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.43 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1a ExonRegion 0 1.10 0.00 1.96 3.00 2.14 1.25 1.01 2.49 2.17 2.66 3.79 0.00 3.00 2.47 4.76 8.92 0.13 6.50 4.97 4.43 1.94 2.08 5.99 8 ER1b ExonRegion 0 3.65 12.62 10.25 8.44 16.79 22.61 9.02 20.68 15.76 25.11 11.50 2.99 3.23 7.62 14.46 20.39 23.68 30.23 38.94 44.42 21.51 8.19 27.95 9 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 3.31 0.00 1.68 2.46 0.00 0.00 2.05 0.00 0.00 2.35 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E1a_E3c KnownJunction 0 3.33 12.76 13.48 12.25 24.53 23.85 7.15 34.83 24.88 43.14 4.53 6.30 6.82 2.47 0.00 10.08 12.06 42.90 34.45 50.62 11.18 5.20 19.80 11 ER2a ExonRegion 0 0.51 3.25 3.15 1.57 1.29 5.34 1.40 0.62 1.34 2.98 4.31 0.74 2.80 10.24 5.94 22.55 8.24 6.67 25.41 6.12 3.80 5.04 12.07 12 E2a_E3c KnownJunction 0 0.00 14.87 1.21 1.53 0.00 0.00 4.15 0.00 0.00 4.59 11.90 0.00 0.00 0.00 0.00 4.27 4.39 2.53 0.00 6.33 2.97 0.00 0.00 13 ER3a ExonRegion 0 9.65 19.50 17.68 21.66 28.72 43.36 31.90 20.40 18.84 30.61 28.26 21.70 27.43 26.32 15.89 31.25 26.90 15.72 24.36 31.22 13.78 15.77 16.54 14 E3_Ab KnownBoundary 0 3.63 11.25 36.28 44.25 66.64 21.69 29.01 41.61 30.87 74.35 50.38 47.42 37.82 30.02 14.09 42.04 49.37 23.50 21.46 45.19 10.81 27.92 41.40 15 ER3b ExonRegion 1 10.51 26.83 29.80 37.85 34.61 38.01 37.35 30.58 31.61 69.15 45.14 75.56 67.78 49.85 37.76 74.02 38.71 36.48 16.70 41.63 22.11 29.94 32.78 16 E3_Ac KnownBoundary 0 21.49 44.01 30.42 35.23 38.37 41.96 54.28 31.50 31.68 58.24 52.22 56.27 56.33 59.92 46.36 60.41 54.70 34.49 26.54 56.89 38.67 30.92 20.32 17 ER3c ExonRegion 0 30.92 38.38 45.52 49.63 51.49 75.49 64.99 68.80 61.10 100.21 70.80 72.17 55.42 84.95 38.16 120.80 62.18 106.07 113.75 97.31 51.90 39.25 67.33 18 E3_Ad KnownBoundary 1 16.89 19.86 21.91 40.95 39.73 87.34 55.12 33.06 47.86 77.31 27.95 74.27 47.72 74.28 26.21 59.22 38.15 68.36 44.80 78.30 33.61 21.37 27.49 19 ER3d ExonRegion 0 7.38 18.55 29.72 33.95 34.88 47.67 29.21 39.53 42.30 72.23 45.04 30.90 20.90 52.69 33.23 49.94 36.67 75.40 46.22 59.79 49.97 20.84 22.62 20 E3a_E4a KnownJunction 0 31.49 28.42 15.88 27.24 34.80 69.73 57.76 48.10 61.46 63.80 52.49 24.46 20.45 35.79 24.11 49.39 37.49 91.20 51.48 58.55 73.76 15.00 23.90 21 ER3e ExonRegion 0 0.00 0.00 1.53 1.02 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.60 0.00 0.00 0.00 0.00 0.00 0.00 22 E4_Aa NovelBoundary 0 6.45 0.00 18.12 8.19 7.39 0.00 1.77 4.72 2.78 5.00 2.47 6.30 0.00 4.59 0.00 3.93 7.76 3.52 0.00 2.75 0.00 0.00 0.00 23 ER4a ExonRegion 0 19.92 28.82 38.08 34.57 27.18 53.22 33.08 53.32 55.31 60.56 57.96 26.88 18.12 54.18 40.62 67.70 69.32 122.52 48.93 73.11 54.74 21.82 31.56 24 E4_Da NovelBoundary 0 13.34 8.42 7.21 15.05 0.00 7.89 12.19 8.46 2.98 13.03 7.32 6.30 0.00 0.00 22.25 15.98 12.34 15.92 8.85 24.03 0.00 8.02 19.21 25 E4a_E6a KnownJunction 0 14.89 14.93 35.78 10.39 51.02 39.41 10.29 33.02 44.21 49.78 38.11 11.85 21.75 57.51 16.81 57.93 58.72 44.89 34.73 48.26 44.48 34.05 39.27 26 E4a_E8a NovelJunction 0 3.56 9.60 7.04 2.06 0.00 2.90 14.31 0.00 1.74 6.29 25.64 17.71 13.64 21.72 8.90 0.00 9.44 25.45 16.57 10.93 18.35 3.12 0.00 27 ER5a ExonRegion 0 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 28 I5 Intron 0 4.95 7.13 13.13 14.89 20.94 17.80 16.04 13.15 9.78 12.23 2.67 1.15 3.58 1.29 5.72 6.95 5.73 10.64 6.54 13.41 6.32 1.84 6.97 29 I5_SR1 SilentIntronRegion 0 4.95 7.14 13.14 14.90 20.96 17.81 16.05 13.16 9.78 12.24 2.67 1.15 3.58 1.29 5.73 6.95 5.73 10.64 6.55 13.42 6.32 1.85 6.97 30 E6_Aa NovelBoundary 0 0.00 7.89 22.09 27.17 23.09 24.47 24.02 10.60 14.44 8.30 4.90 0.00 0.00 2.47 0.00 4.36 0.00 17.62 12.52 33.43 21.25 6.12 22.71 31 ER6a ExonRegion 0 14.13 26.71 34.83 24.25 39.43 48.47 20.40 37.51 47.34 54.15 32.93 12.68 11.81 42.68 20.62 40.11 45.78 50.02 24.56 47.19 33.08 17.32 19.50 32 E6_Da NovelBoundary 0 3.70 17.69 21.88 6.46 12.31 0.00 16.34 2.34 5.82 11.90 4.90 6.30 0.00 0.00 14.09 4.36 4.58 2.28 12.99 0.00 20.76 0.00 0.00 33 E6a_E7a KnownJunction 0 20.82 36.38 15.73 26.90 20.37 46.51 14.62 41.90 24.16 38.63 18.37 25.51 6.33 14.01 9.64 23.07 9.44 41.12 17.79 28.12 39.11 10.16 3.41 34 E6a_E8a KnownJunction 0 10.45 3.35 11.03 4.86 8.66 0.00 0.00 2.55 5.90 4.51 11.74 6.00 6.01 30.43 14.09 16.24 22.63 8.54 0.00 5.43 11.12 0.00 0.00 35 E7_Aa NovelBoundary 0 17.86 0.00 7.48 5.19 11.71 2.90 14.84 4.23 2.92 5.88 0.00 6.15 13.64 4.89 10.51 8.20 4.49 2.57 9.04 12.85 0.00 3.12 4.18 36 ER7a ExonRegion 0 11.98 28.34 25.31 38.42 40.79 60.58 36.50 47.21 46.29 56.31 33.95 14.58 14.48 32.60 12.80 24.37 11.41 47.08 22.30 43.90 35.21 17.51 16.24 37 E7_Da NovelBoundary 0 0.00 9.27 6.62 7.33 28.69 0.00 10.73 4.19 0.00 14.13 2.00 0.00 19.97 2.12 10.63 8.29 0.00 2.28 0.00 14.00 3.09 2.69 0.00 38 E7a_E8a KnownJunction 1 20.74 33.02 28.44 38.72 43.38 67.75 29.72 36.47 62.67 53.40 46.96 7.20 27.11 31.20 10.38 45.71 7.85 42.20 20.99 35.28 50.66 28.04 28.43 39 E8_Aa NovelBoundary 0 18.89 6.05 17.27 11.32 21.82 5.22 14.93 14.46 8.80 4.27 2.37 0.00 8.12 2.47 0.00 10.08 7.67 8.91 3.95 14.38 4.94 0.00 3.41 40 ER8a ExonRegion 0 34.70 64.25 61.69 57.55 69.26 92.40 59.36 75.71 63.00 80.04 68.27 34.99 33.72 66.66 50.76 71.42 60.82 120.62 50.02 84.44 50.50 30.14 39.20 41 E8a_E9a KnownJunction 0 59.27 65.78 40.45 50.51 105.60 124.98 73.05 75.33 57.12 56.03 49.07 23.86 25.32 57.92 43.76 31.02 43.01 62.80 48.66 72.55 51.65 21.98 27.66 42 E9_Aa NovelBoundary 0 0.00 2.76 3.16 1.50 15.53 5.68 25.70 2.26 2.66 2.42 0.00 0.00 6.49 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.00 0.00 4.10 43 ER9a ExonRegion 0 64.91 82.63 93.21 99.31 131.57 125.90 95.49 106.26 75.57 106.39 77.44 75.77 40.79 58.59 66.11 58.78 65.61 64.47 56.46 84.91 36.18 40.90 27.46 44 E9_Da KnownBoundary 0 124.17 123.20 99.85 154.36 160.44 141.45 113.01 139.20 97.89 130.33 61.17 68.57 38.80 49.56 65.64 41.61 50.68 53.77 56.66 82.39 37.31 36.99 36.19 45 ER9b ExonRegion 0 54.07 57.15 82.05 84.46 93.39 86.75 57.11 74.65 50.02 77.42 35.59 23.27 16.74 32.66 48.42 32.42 29.41 67.57 48.21 60.25 24.90 19.91 20.92 46 E9_Db KnownBoundary 1 41.41 38.22 41.63 20.58 27.50 29.70 36.66 25.34 14.44 26.78 2.42 24.76 0.00 15.13 23.24 11.79 3.74 35.11 22.40 29.21 3.15 5.94 11.10 47 ER9c ExonRegion 0 15.21 25.58 38.21 21.66 39.78 22.20 38.85 31.07 19.14 25.47 2.59 11.74 2.72 9.79 19.62 8.21 6.08 32.82 31.52 29.00 4.23 7.13 8.27 48 E9_Dc KnownBoundary 0 6.67 15.79 32.32 21.18 76.06 16.58 51.98 24.40 24.91 25.79 4.37 0.00 6.82 12.71 25.96 4.36 8.60 21.31 29.74 28.63 5.68 4.78 11.95 49 ER9d ExonRegion 0 17.19 17.23 19.04 15.95 30.00 16.43 27.56 19.92 15.55 18.15 6.40 11.82 19.62 12.22 22.68 17.69 13.68 20.17 16.80 25.79 12.04 6.31 18.81 50 IG38 Intergenic 0 4.24 10.75 16.62 17.73 25.12 8.06 13.50 15.53 8.75 10.91 0.39 0.93 0.88 1.03 2.01 1.73 0.86 9.67 9.22 11.07 1.57 0.69 2.03 51 IG38_SR1 SilentIntergenicRegion 0 4.42 11.70 15.41 18.02 28.78 7.49 15.24 16.31 9.16 10.66 0.27 0.97 1.14 0.86 1.67 1.50 0.68 8.81 11.32 13.42 1.26 0.62 2.02 52 IG38_AR1 ActiveIntergenicRegion 0 4.51 13.53 12.42 14.96 33.60 10.42 16.13 11.30 7.83 9.48 0.00 0.51 0.55 0.71 2.93 1.69 0.47 6.65 4.53 11.17 1.57 0.59 1.25 53 IG38_SR2 SilentIntergenicRegion 0 3.42 10.99 19.55 21.95 22.51 9.08 12.25 15.99 8.73 9.27 0.57 1.82 0.86 1.24 0.91 1.76 1.28 10.62 5.46 9.75 0.98 0.90 1.30 54 IG38_AR2 ActiveIntergenicRegion 0 3.53 5.89 21.73 15.85 11.94 6.44 7.45 15.39 8.53 14.71 0.41 0.79 0.00 1.45 3.38 1.75 1.32 15.72 7.93 8.79 1.77 1.08 4.05 55 IG38_SR3 SilentIntergenicRegion 0 4.99 8.98 16.06 14.59 19.32 9.02 11.52 14.64 7.86 11.62 0.93 0.00 0.82 1.27 3.04 2.71 0.95 8.63 9.62 4.97 3.49 0.46 1.70