Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RSBN1L Gene 0 76.38 104.89 76.95 89.00 151.26 127.57 158.14 71.87 48.59 68.74 73.44 135.25 126.41 93.34 63.38 90.16 83.41 50.92 55.34 70.93 30.53 41.88 37.41 2 334955 Transcript 0 79.51 27.47 51.31 35.15 65.73 57.36 71.07 17.76 11.19 17.72 30.63 8.19 32.08 52.69 24.12 53.80 37.95 36.44 24.85 37.89 24.05 16.81 21.71 3 445288 Transcript 0 2.19 10.91 9.45 4.27 8.41 4.98 4.74 0.33 1.90 3.33 0.75 0.46 0.52 0.18 1.16 4.22 0.85 1.54 8.46 8.14 1.43 0.02 0.38 4 469357 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 445512 Transcript 0 0.75 1.09 1.29 1.78 0.55 0.99 2.36 0.46 0.33 0.63 0.34 0.66 4.12 0.01 0.02 0.00 2.92 0.33 0.00 2.67 0.41 0.00 0.52 6 468035 Transcript 0 10.51 41.39 11.39 15.23 26.89 22.37 29.32 10.63 7.80 13.01 10.46 28.58 19.29 12.60 10.55 10.55 11.96 3.48 7.13 16.26 3.53 5.39 7.11 7 462800 Transcript 0 18.64 8.20 6.45 11.05 15.91 10.42 21.10 5.83 6.63 5.64 2.52 19.32 24.12 5.80 7.98 4.88 2.67 4.27 5.19 20.35 0.93 8.71 1.73 8 441514 Transcript 0 0.00 0.00 2.31 2.06 16.21 0.00 6.05 6.78 4.54 8.33 6.53 26.56 0.00 0.00 0.00 3.85 0.00 1.58 4.80 6.52 0.00 0.00 0.00 9 IG26_SR1 SilentIntergenicRegion 0 7.70 2.22 13.54 0.74 4.87 12.08 2.59 5.63 2.01 3.01 2.82 0.00 0.00 4.45 4.48 6.33 1.20 5.32 3.03 3.88 3.51 2.28 3.21 10 ER1a ExonRegion 0 51.14 31.14 57.43 28.81 53.29 72.76 73.19 19.29 18.12 25.62 37.60 11.57 17.83 64.41 46.48 65.60 52.38 62.46 43.59 41.52 40.59 12.35 30.95 11 E1a_E3a KnownJunction 1 184.11 46.97 88.35 69.82 138.54 93.01 133.99 29.37 14.21 23.96 54.07 0.00 68.50 90.94 24.60 93.48 58.16 45.02 30.97 62.70 31.57 34.60 33.21 12 ER2a ExonRegion 0 4.38 12.54 7.14 4.58 4.42 9.96 7.40 0.66 3.79 3.48 1.49 0.92 1.04 0.36 2.33 8.44 1.70 3.09 7.32 7.26 0.14 0.03 0.76 13 E2a_E3a KnownJunction 0 0.00 9.27 11.77 3.96 12.39 0.00 2.08 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.60 9.01 2.72 0.00 0.00 14 I2_AR4 ActiveIntronRegion 0 6.48 7.01 10.03 18.11 20.57 1.15 19.51 7.22 1.40 4.78 0.60 9.46 1.21 0.00 2.87 7.40 1.46 2.37 0.00 6.21 0.32 0.00 4.59 15 ER3a ExonRegion 1 129.45 65.18 91.35 103.42 166.97 112.58 149.92 57.56 29.32 42.40 53.15 55.95 145.55 103.51 60.55 87.67 55.92 24.18 71.28 64.59 18.59 45.52 32.88 16 E3a_E4a KnownJunction 0 134.91 95.84 144.70 173.64 154.84 166.61 251.95 96.57 64.58 80.40 87.44 108.49 213.62 113.90 93.08 106.30 84.62 34.49 107.20 100.35 10.13 54.50 33.97 17 ER4a ExonRegion 0 139.11 198.67 119.48 143.77 220.01 153.82 247.72 81.33 68.13 86.34 114.71 267.25 229.59 152.33 69.44 134.11 137.29 60.63 92.78 96.85 44.98 63.71 58.30 18 E4_Da KnownBoundary 0 428.15 458.47 123.65 164.71 349.58 289.04 409.08 113.49 95.92 98.66 124.29 248.33 204.21 165.76 114.59 192.60 145.96 96.13 137.13 117.61 49.42 67.23 69.66 19 E4a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER4b ExonRegion 0 146.51 279.62 121.23 177.55 225.27 174.67 305.23 113.27 79.45 108.20 97.92 228.87 203.81 142.25 83.56 141.06 120.74 52.65 80.98 116.88 31.89 63.34 66.92 21 E4b_E6b KnownJunction 0 98.76 425.98 110.17 145.90 270.12 251.67 244.00 69.05 66.64 98.23 77.18 267.09 193.17 86.47 61.44 74.08 121.46 30.51 57.41 129.75 29.96 31.23 49.34 22 I4_AR1 ActiveIntronRegion 0 36.46 16.10 7.28 14.49 3.44 7.71 16.48 2.19 3.25 3.65 0.28 15.73 12.25 0.00 8.23 4.19 6.80 10.03 0.00 9.99 9.53 4.08 2.34 23 I4_AR4 ActiveIntronRegion 1 4.23 0.00 2.45 4.09 0.89 5.50 11.92 1.73 2.47 10.51 0.00 12.99 2.35 0.00 0.00 0.00 19.81 10.47 4.78 6.38 4.41 2.08 8.81 24 I4_SR3 SilentIntronRegion 0 9.45 9.22 1.55 3.71 1.65 1.09 12.75 1.93 1.12 8.47 1.24 4.58 4.42 0.79 0.00 5.08 7.45 16.07 8.22 6.26 5.64 3.13 8.16 25 I4_AR5 ActiveIntronRegion 0 7.86 4.94 4.90 8.18 5.35 0.00 10.78 3.46 2.47 8.36 1.93 4.33 9.38 0.00 0.00 2.55 6.60 24.02 11.83 9.73 11.02 5.36 11.75 26 I4_AR6 ActiveIntronRegion 0 7.65 0.66 4.94 7.83 5.35 0.00 8.50 3.74 2.47 7.88 1.93 6.01 4.08 0.58 2.34 0.67 9.16 14.48 7.19 11.60 6.54 1.95 3.69 27 I4_AR7 ActiveIntronRegion 0 11.85 4.07 4.96 6.95 4.55 0.00 10.39 3.37 2.47 7.45 0.68 8.66 3.52 1.62 4.21 6.84 9.90 16.35 4.46 12.34 4.74 2.08 2.06 28 E5_Aa NovelBoundary 1 33.64 37.82 1.80 6.19 19.61 5.22 14.31 2.51 1.45 6.42 2.37 0.00 0.00 0.00 0.00 37.51 0.00 5.14 17.88 9.40 2.90 5.63 8.45 29 ER5a ExonRegion 0 1.50 2.19 2.59 3.56 1.10 1.99 4.72 0.92 0.65 1.25 0.68 1.32 8.24 0.01 0.04 0.00 5.85 0.65 0.00 5.33 0.81 0.00 1.04 30 E5a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER6a ExonRegion 0 16.09 74.84 19.85 27.53 50.84 40.71 50.84 15.90 14.08 19.73 18.17 45.89 32.83 19.81 13.93 17.83 21.13 5.91 10.19 22.55 7.05 6.67 9.40 32 ER6b ExonRegion 0 95.15 335.57 111.04 120.88 219.49 165.06 223.39 87.81 69.07 107.78 121.66 206.36 180.14 133.56 86.51 133.25 131.00 65.04 64.64 111.90 35.90 51.16 46.90 33 E6a_E7b KnownJunction 0 139.58 275.48 121.40 161.92 150.34 161.16 205.89 98.62 93.37 126.01 124.72 325.01 191.87 175.70 122.26 190.04 162.23 76.48 107.30 143.37 52.39 73.73 69.06 34 I6_AR1 ActiveIntronRegion 0 11.64 12.88 7.56 14.54 8.03 7.95 38.17 16.13 6.59 7.26 9.66 25.26 4.69 3.25 11.61 19.32 15.95 1.85 3.19 16.31 2.20 2.08 11.75 35 ER7a ExonRegion 0 18.64 8.20 6.45 11.05 15.91 10.42 21.10 5.83 6.63 5.64 2.52 19.32 24.12 5.80 7.98 4.88 2.67 4.27 5.19 20.35 0.93 8.71 1.73 36 E7_Ab KnownBoundary 0 6.52 11.51 3.67 6.73 3.23 10.45 21.46 8.75 11.11 9.19 5.05 24.46 26.62 12.71 8.90 16.83 9.44 4.52 4.42 12.02 0.00 2.88 11.78 37 ER7b ExonRegion 0 79.58 132.43 99.85 110.01 173.75 130.51 175.54 113.41 81.27 117.13 123.65 239.43 207.39 184.70 111.19 166.50 183.76 125.83 100.36 101.83 52.95 56.70 63.20 38 E7_Da NovelBoundary 0 13.26 6.51 16.53 15.88 46.26 9.65 40.36 5.91 9.09 5.99 2.63 12.60 6.82 11.89 0.00 3.16 3.65 8.87 4.61 12.02 11.74 5.69 8.11 39 E7a_E8a KnownJunction 0 83.87 92.62 114.51 104.02 219.52 141.51 194.98 130.78 88.97 116.45 112.24 187.26 108.76 192.18 136.10 168.42 178.12 102.89 96.29 111.79 43.12 84.99 43.11 40 I7 Intron 0 11.98 16.91 6.61 18.51 17.35 11.33 23.79 9.99 6.92 6.10 3.45 10.44 14.14 5.50 3.97 9.35 5.58 6.42 5.01 9.80 3.62 3.67 6.07 41 I7_AR1 ActiveIntronRegion 0 16.11 25.49 8.41 23.96 19.60 12.40 28.96 14.00 11.52 6.64 5.09 11.18 12.92 5.45 4.25 13.27 8.24 10.36 3.26 13.46 7.05 3.40 9.80 42 I7_SR2 SilentIntronRegion 0 16.28 27.83 8.49 21.91 22.64 16.66 25.81 12.46 8.34 8.50 2.43 8.00 6.28 6.92 5.93 11.89 7.17 9.36 8.04 11.79 5.98 3.65 10.13 43 I7_AR2 ActiveIntronRegion 0 17.75 27.26 8.61 23.59 42.34 19.74 27.83 11.91 7.43 9.07 1.87 13.89 9.86 7.07 7.09 5.14 5.06 1.39 7.92 10.19 2.12 5.38 7.30 44 E8_Aa NovelBoundary 0 47.93 25.92 7.04 29.63 24.11 0.00 29.68 25.84 8.28 8.86 5.21 19.36 13.15 14.36 9.27 0.00 17.39 9.49 4.71 9.33 3.15 11.14 4.35 45 ER8a ExonRegion 0 93.57 217.33 106.85 119.58 239.37 217.53 275.07 119.63 80.17 120.25 168.97 217.17 169.12 206.33 112.05 219.34 254.20 131.43 107.47 118.23 109.66 76.42 82.49 46 E8_Ab KnownBoundary 0 77.64 165.43 81.90 117.37 205.35 135.15 164.59 98.33 80.03 120.77 125.35 198.96 173.20 150.98 98.65 165.60 150.35 158.81 82.07 121.06 68.63 42.74 46.86 47 ER8b ExonRegion 0 82.95 200.52 77.34 113.52 182.46 201.31 210.72 123.89 84.22 113.14 147.90 196.55 201.26 178.32 113.53 184.75 166.74 161.32 100.48 113.39 84.03 76.57 70.18 48 E8_Da KnownBoundary 0 2.89 19.40 5.09 9.06 8.06 2.61 8.04 2.34 4.63 4.67 2.05 5.70 14.28 7.24 0.00 3.85 17.95 2.07 0.00 0.00 5.13 4.84 0.00 49 E8a_E9a KnownJunction 0 108.39 201.61 84.80 112.71 273.77 283.47 328.04 122.11 90.74 98.05 174.99 241.73 180.99 220.44 189.26 187.98 227.30 156.20 132.62 142.73 131.15 124.06 65.05 50 ER8c ExonRegion 0 7.22 16.63 7.13 7.41 4.53 1.69 12.76 5.01 3.33 5.23 3.87 10.55 15.99 12.99 6.84 4.95 13.46 3.03 2.78 1.25 1.19 8.55 0.45 51 E8_Db KnownBoundary 0 17.93 22.36 7.10 6.66 0.00 0.00 18.90 6.86 2.89 6.77 8.48 6.30 12.82 11.77 11.62 8.54 7.48 4.44 11.86 8.69 0.00 10.84 0.00 52 ER8d ExonRegion 0 4.94 7.94 2.94 2.93 2.93 4.02 7.80 5.35 1.51 6.30 2.74 11.27 5.75 5.38 7.18 3.26 2.80 1.05 4.08 9.97 0.00 4.12 4.83 53 I8 Intron 0 12.79 14.34 10.88 10.57 20.55 15.78 20.89 10.60 6.41 7.89 3.81 15.87 19.71 6.29 4.96 9.11 7.20 4.95 2.54 6.07 1.48 9.45 4.56 54 I8_AR1 ActiveIntronRegion 0 24.67 27.62 17.99 18.19 32.94 26.07 31.34 19.70 11.03 13.34 4.79 24.37 33.44 6.10 6.92 10.41 11.34 4.05 2.63 8.69 0.97 16.45 5.09 55 E9_Aa NovelBoundary 0 60.31 21.90 17.24 22.44 86.59 42.08 51.76 19.59 14.18 9.32 11.85 23.86 52.92 8.12 17.68 21.28 17.02 10.36 4.05 18.09 2.72 7.84 7.09 56 I8_SR2 SilentIntronRegion 0 15.52 12.65 8.17 0.00 14.27 7.13 17.80 1.73 4.67 6.12 0.64 0.00 0.00 14.62 5.16 0.00 11.00 3.90 0.00 1.42 2.20 4.17 4.57 57 ER9a ExonRegion 0 130.29 135.06 120.32 153.47 338.13 309.39 288.65 121.15 96.68 111.39 152.70 201.86 193.54 187.18 122.97 196.00 168.22 112.22 92.05 136.76 81.60 81.12 80.91 58 E9a_E10a KnownJunction 1 136.69 113.47 116.55 155.66 193.21 122.37 175.59 126.10 90.91 114.49 111.77 213.52 373.51 141.03 81.34 197.56 109.58 120.30 123.77 138.38 72.77 31.72 87.75 59 E9a_E10b KnownJunction 0 0.00 0.00 2.31 2.06 16.21 0.00 6.05 6.78 4.54 8.33 6.53 26.56 0.00 0.00 0.00 3.85 0.00 1.58 4.80 6.52 0.00 0.00 0.00 60 E10_Aa NovelBoundary 0 18.30 5.59 24.98 30.50 21.56 18.91 49.55 10.68 8.74 8.27 4.69 18.91 13.47 7.30 4.45 3.42 3.55 6.43 3.76 5.82 6.05 5.69 14.17 61 ER10a ExonRegion 0 129.55 142.67 133.40 178.82 219.54 190.96 200.08 130.35 103.07 135.07 149.42 187.86 231.64 191.15 150.58 235.02 153.17 175.45 135.81 180.18 68.10 95.13 96.12 62 E10_Da KnownBoundary 0 143.95 128.20 103.57 164.45 217.23 189.78 241.53 83.71 67.53 113.38 178.52 189.66 214.92 131.50 156.99 166.54 137.73 75.61 182.88 152.44 34.72 96.75 49.17 63 E10_Ab KnownBoundary 0 111.20 137.41 129.36 174.20 177.00 222.88 326.94 133.78 98.64 114.67 168.83 248.48 128.40 167.29 95.06 116.47 94.44 57.91 69.84 123.87 55.35 74.89 63.42 64 ER10b ExonRegion 0 107.67 139.26 157.97 223.04 224.65 239.43 300.60 140.91 116.53 157.72 225.22 268.05 194.13 168.63 127.40 169.15 146.82 103.31 136.14 159.02 51.16 96.20 68.05 65 ER10c ExonRegion 0 162.87 195.54 161.67 208.97 391.63 341.12 395.66 167.91 125.42 145.94 191.25 266.59 270.87 173.05 131.87 193.37 170.21 103.22 127.33 166.91 59.21 77.19 83.33 66 E10_Db KnownBoundary 0 140.17 157.34 163.60 195.88 275.64 244.86 355.55 177.56 125.52 135.49 152.78 338.66 254.20 183.65 152.67 142.36 134.74 46.64 88.00 162.41 54.30 86.09 77.51 67 ER10d ExonRegion 0 63.63 78.27 78.94 99.07 187.81 155.69 171.32 108.45 52.88 91.22 60.36 169.80 149.51 71.61 69.44 59.77 57.51 20.07 34.32 62.29 9.44 51.12 23.31 68 ER10e ExonRegion 0 3.29 4.29 8.17 6.81 5.35 6.32 6.03 4.61 1.24 3.57 0.21 12.99 9.90 2.71 1.29 2.31 3.30 1.85 0.00 9.46 0.00 3.47 0.98 69 IG27 Intergenic 0 20.10 42.44 31.38 46.81 45.84 31.98 39.30 28.73 16.23 22.62 7.12 21.67 24.99 10.06 11.82 12.66 9.42 8.01 8.84 18.26 1.94 12.78 5.69 70 IG27_AR1 ActiveIntergenicRegion 0 7.96 31.45 23.68 40.76 33.58 35.23 37.64 24.74 11.53 16.43 7.27 31.73 32.98 19.17 17.46 17.39 11.04 10.00 7.99 26.63 1.84 18.29 17.19 71 IG27_SR1 SilentIntergenicRegion 0 10.79 48.56 42.60 62.11 92.84 68.97 71.84 31.88 18.10 34.47 7.61 43.51 63.31 22.99 20.74 16.65 7.61 8.67 10.58 27.65 1.37 21.76 9.71 72 IG27_AR2 ActiveIntergenicRegion 0 34.62 114.58 80.89 118.36 151.38 103.28 125.35 71.29 44.45 62.32 26.19 76.51 100.28 37.22 36.26 36.16 34.87 26.64 26.93 53.36 6.46 43.53 16.79 73 IG27_AR6 ActiveIntergenicRegion 0 108.08 151.08 148.38 196.24 156.20 111.97 123.63 125.75 63.26 86.95 24.92 67.38 54.60 28.60 40.53 39.41 23.33 19.77 26.05 53.13 4.38 46.74 20.16