Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC004967.6 Gene 0 31.52 15.19 18.70 28.42 25.11 19.98 24.74 27.10 9.84 34.52 55.83 61.60 79.65 67.08 94.13 67.90 61.14 25.07 25.61 31.42 18.08 14.28 17.73 2 358384 Transcript 0 17.72 2.73 10.44 13.35 12.65 14.40 14.65 14.30 4.99 27.65 65.33 33.28 54.53 73.46 109.08 57.84 73.46 3.13 6.58 1.07 13.66 14.06 10.39 3 442908 Transcript 0 13.14 14.77 9.51 14.76 14.17 7.90 10.54 13.40 5.44 13.91 17.10 34.20 32.04 15.81 17.78 18.47 19.37 16.87 18.15 26.77 9.37 4.96 9.68 4 ER1a ExonRegion 0 61.16 12.52 7.63 7.58 23.97 33.10 26.16 8.07 6.05 18.49 26.54 6.43 8.60 64.45 70.17 44.43 28.45 2.62 18.20 4.21 15.40 10.82 8.44 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 Ix Intron 0 30.91 38.47 45.04 33.87 34.92 15.92 19.34 37.18 13.44 29.48 14.89 29.40 30.98 24.91 34.41 36.26 23.92 34.44 36.45 30.10 8.36 7.67 13.17 7 Ix_SR2 SilentIntronRegion 0 2.40 2.96 16.66 4.83 2.54 1.21 0.22 5.48 3.94 3.89 0.07 0.00 10.17 12.19 18.05 27.00 1.79 12.09 15.28 8.40 2.99 3.53 3.04 8 Ix_AR3 ActiveIntronRegion 0 32.79 35.11 50.59 38.27 26.05 17.51 11.82 43.96 16.59 37.26 16.86 17.38 21.52 22.19 37.98 38.29 22.59 45.06 36.99 32.18 10.34 6.38 12.58 9 Ix_SR1 SilentIntronRegion 0 53.90 124.96 26.04 23.35 76.04 21.55 32.08 19.68 9.47 16.19 10.21 40.34 57.22 52.24 70.94 63.50 31.91 22.23 77.40 34.40 10.28 12.05 31.96 10 Ix_AR2 ActiveIntronRegion 0 35.59 38.79 46.95 39.82 53.30 19.56 33.37 52.40 12.45 34.18 19.25 47.12 48.64 28.21 28.98 28.79 29.84 22.90 30.44 34.49 5.53 12.40 11.42 11 Ix_AR1 ActiveIntronRegion 0 21.89 27.55 45.59 29.70 37.22 10.46 28.78 18.34 10.50 15.85 11.72 53.77 37.39 23.58 21.67 31.80 27.08 29.84 34.08 25.80 7.07 5.94 13.62 12 Ix Intron 0 10.71 7.29 1.54 3.85 16.35 10.43 6.70 2.71 2.33 2.16 5.30 23.35 23.66 4.09 9.42 9.40 7.65 1.75 7.38 9.86 1.39 0.44 3.09 13 Ix_AR2 ActiveIntronRegion 0 13.16 9.15 1.85 4.87 19.14 12.78 8.37 3.38 2.95 2.74 6.64 29.47 29.59 4.98 11.65 11.66 9.70 2.22 9.36 12.44 1.77 0.56 3.92 14 ER2a ExonRegion 0 18.41 3.85 31.57 44.26 4.37 12.38 12.04 27.27 11.46 45.20 128.36 85.79 107.25 210.90 248.78 169.06 125.91 5.40 18.15 2.21 25.05 47.13 31.41 15 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E2a_E4b NovelJunction 0 15.63 3.35 22.03 23.24 18.76 10.79 25.00 30.85 1.79 33.20 101.82 42.16 46.91 37.91 65.76 53.49 42.08 5.97 0.00 2.43 5.56 4.90 15.45 17 Ix Intron 0 15.03 15.75 19.80 25.70 29.71 10.65 19.49 21.28 7.84 16.33 12.23 50.24 60.80 20.53 21.22 29.56 18.75 12.57 13.16 27.75 5.12 5.92 11.00 18 Ix_SR1 SilentIntronRegion 0 15.10 15.82 19.90 25.83 29.86 10.70 19.58 21.39 7.88 16.41 12.29 50.50 61.11 20.61 21.32 29.69 18.85 12.63 13.23 27.89 5.14 5.94 11.04 19 ER3a ExonRegion 0 13.18 0.00 14.27 18.65 18.79 13.41 18.01 22.40 5.87 45.97 114.65 47.71 91.06 80.22 165.92 75.11 136.44 4.35 3.12 0.00 21.53 16.75 15.05 20 E3_Da NovelBoundary 1 16.00 58.48 44.32 66.99 88.96 23.05 37.80 57.87 32.90 42.71 23.90 97.53 110.54 60.51 55.75 92.45 43.85 53.14 23.15 78.49 21.99 13.59 15.62 21 E3a_E4b KnownJunction 1 13.56 0.00 9.20 9.59 28.78 27.48 31.71 28.05 6.54 56.22 122.45 59.72 120.28 85.17 169.60 58.45 149.98 6.43 0.00 0.00 19.95 9.67 7.43 22 I3 Intron 1 34.56 23.75 30.34 36.59 42.59 22.86 33.49 41.53 12.41 28.33 18.29 87.49 122.19 21.22 34.79 28.24 21.59 16.11 19.00 42.79 5.80 9.60 9.79 23 I3_SR1 SilentIntronRegion 0 46.18 29.75 38.33 46.05 54.11 29.95 45.04 53.91 15.29 37.22 23.67 114.70 160.69 26.42 44.71 35.15 26.26 20.00 24.24 55.49 7.40 12.68 12.52 24 I3_AR3 ActiveIntronRegion 0 28.93 19.26 49.23 56.24 37.28 23.78 23.85 60.50 23.38 39.19 23.26 97.74 147.66 31.44 37.12 37.61 26.14 23.96 24.68 58.45 9.68 11.50 11.34 25 E4_Aa NovelBoundary 1 153.73 66.70 83.20 137.05 87.10 58.77 66.33 98.95 30.29 91.22 58.80 231.68 312.48 80.52 111.38 157.74 145.49 76.32 110.31 150.46 58.63 22.47 63.60 26 ER4a ExonRegion 0 4.01 8.09 0.21 0.26 0.51 3.43 3.69 0.59 0.11 0.95 2.63 1.01 1.90 1.73 3.02 1.26 2.81 0.12 0.07 0.00 0.52 0.22 0.25 27 E4_Ab KnownBoundary 0 21.41 17.23 49.79 49.41 12.56 7.67 8.48 38.86 22.37 38.06 26.64 24.31 26.30 19.54 24.97 28.11 56.38 65.50 17.60 40.20 8.65 5.39 4.35 28 ER4b ExonRegion 0 37.19 13.25 24.39 39.34 30.04 27.84 39.77 41.71 11.87 53.33 87.50 86.12 141.28 95.50 159.36 109.65 95.88 34.64 22.69 29.42 19.57 17.00 20.35 29 E4_Da KnownBoundary 0 13.78 36.38 43.43 61.93 56.88 37.42 24.91 82.81 35.27 84.10 141.51 158.45 149.83 154.39 154.65 174.23 105.94 36.56 61.84 56.31 23.48 24.86 41.32 30 ER4c ExonRegion 0 22.27 21.45 18.82 29.27 27.83 12.38 17.39 26.22 10.78 26.87 31.58 67.39 62.19 29.90 32.53 35.67 35.93 33.62 36.24 53.54 18.22 9.69 19.12