Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TP53TG1 Gene 0 20.70 12.25 26.47 14.90 33.20 44.08 12.16 17.52 23.28 15.09 81.98 17.11 12.44 56.75 94.43 98.57 62.61 13.15 20.90 14.72 53.35 16.65 26.28 2 416560 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 359941 Transcript 0 6.26 9.40 4.47 2.43 3.29 11.87 3.17 2.24 7.23 4.85 0.00 10.47 2.66 2.04 3.02 5.58 2.27 0.00 2.93 0.81 0.00 1.44 3.45 4 380161 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 432193 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 10.38 7.60 0.00 1.70 0.00 0.00 3.15 0.00 0.00 6 421293 Transcript 1 0.00 0.00 8.63 7.06 0.00 0.00 0.00 5.50 8.59 3.95 54.17 0.00 0.00 40.85 71.45 60.58 49.46 0.00 4.42 3.26 42.13 2.45 7.85 7 ER1a ExonRegion 0 15.17 9.22 2.04 1.50 18.20 41.20 8.91 4.49 2.31 2.26 11.08 0.00 0.00 13.10 17.99 20.90 10.34 2.16 3.82 4.61 6.39 1.18 6.07 8 ER1b ExonRegion 1 34.98 15.66 30.06 14.97 35.17 69.42 15.04 16.04 16.30 9.77 99.18 3.68 4.35 51.09 93.34 132.94 89.96 16.53 31.11 14.42 61.97 12.71 39.47 9 E1_Da KnownBoundary 0 0.00 0.00 51.71 17.45 3.99 14.42 3.36 14.66 22.77 14.24 64.75 11.85 0.00 53.15 35.11 39.90 30.01 12.68 34.73 26.27 66.04 17.51 14.51 10 E1a_E1c KnownJunction 1 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45.43 0.00 0.00 12.54 38.20 8.20 76.58 0.00 0.00 0.00 3.15 0.00 0.00 11 E1a_E2a KnownJunction 0 0.00 0.00 8.63 7.06 0.00 0.00 0.00 5.50 8.59 3.95 54.17 0.00 0.00 40.85 71.45 60.58 49.46 0.00 4.42 3.26 42.13 2.45 7.85 12 ER1c ExonRegion 0 12.34 2.49 42.89 23.48 19.48 12.53 7.38 26.80 29.89 22.45 68.06 16.65 6.80 71.96 115.15 214.20 84.52 40.31 45.67 19.90 65.18 24.71 81.77 13 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E1b_E1c NovelJunction 1 9.33 3.03 41.48 23.01 64.52 49.40 19.30 40.42 33.77 25.06 40.64 12.30 19.48 66.28 112.00 270.61 60.50 45.35 80.57 15.66 45.53 24.19 60.27 15 E1_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 10.38 7.60 0.00 1.70 0.00 0.00 3.15 0.00 0.00 17 ER1d ExonRegion 0 14.82 2.03 40.44 23.17 42.81 27.51 13.24 36.30 32.11 25.23 86.98 8.66 18.76 82.83 145.06 222.91 108.93 40.65 54.15 14.89 39.67 25.00 52.86 18 ER1e ExonRegion 1 6.53 5.76 44.11 25.71 79.01 65.61 18.90 35.19 34.62 25.65 98.09 6.49 7.95 74.80 119.35 162.31 92.24 25.56 34.69 13.00 39.73 15.92 35.73 19 E1_Dc KnownBoundary 0 10.37 12.63 49.20 26.07 133.11 134.41 37.76 32.82 30.70 21.79 109.55 5.40 0.00 76.70 143.52 130.39 73.96 4.77 9.04 17.58 34.47 13.72 35.08 20 ER1f ExonRegion 0 17.80 25.68 36.03 19.90 64.24 78.75 22.43 25.50 34.42 25.51 125.45 25.08 22.69 75.88 121.17 92.25 75.83 12.38 18.22 20.41 75.48 20.01 20.08 21 E1_Dd NovelBoundary 0 6.74 3.16 8.57 11.55 4.24 2.67 0.00 7.06 14.87 6.63 15.85 5.70 0.00 0.00 25.47 12.39 0.00 1.70 7.91 8.69 2.84 0.00 4.10 22 E1d_E2a KnownJunction 0 57.49 19.34 47.07 31.70 40.75 23.79 2.08 18.94 24.80 19.02 130.82 7.65 32.47 116.31 169.73 83.40 54.04 15.09 22.97 20.96 71.97 22.84 16.82 23 E2_Aa NovelBoundary 0 0.00 0.00 8.54 13.42 0.00 2.78 1.85 14.05 3.36 4.84 5.21 0.00 34.90 0.00 0.00 0.00 3.65 9.53 0.00 0.00 0.00 0.00 0.00 24 ER2a ExonRegion 0 26.72 7.96 27.08 18.28 23.52 22.68 9.10 19.81 32.62 19.02 123.11 34.66 27.88 89.34 150.31 123.67 73.25 11.91 22.10 20.37 81.37 33.43 21.15 25 E2a_E3a KnownJunction 0 16.52 6.58 24.45 7.59 42.87 52.70 20.36 13.51 12.56 9.72 51.59 25.96 13.80 54.62 51.30 15.21 40.49 6.34 12.42 21.80 68.20 15.68 7.68 26 I2_AR2 ActiveIntronRegion 0 12.87 3.05 5.93 5.26 12.08 7.36 3.28 8.15 4.79 3.27 1.55 4.32 15.76 8.03 7.14 6.23 0.84 0.26 1.35 3.01 0.00 0.29 0.26 27 ER3a ExonRegion 0 19.20 5.14 20.56 9.30 32.98 36.14 9.46 9.13 17.29 8.72 41.63 16.91 8.99 43.53 74.33 36.32 39.54 5.08 9.12 13.42 32.03 8.97 10.66 28 E3_Da KnownBoundary 0 7.26 2.57 3.90 3.46 4.33 13.51 4.20 10.80 11.83 1.48 8.95 12.60 0.00 9.89 13.35 0.00 3.83 2.11 0.00 6.46 2.84 0.00 0.00 29 ER3b ExonRegion 1 8.51 10.77 4.61 5.50 2.41 9.78 2.49 10.98 14.12 6.36 2.69 13.24 0.00 10.86 7.62 4.08 0.65 0.94 2.12 3.25 4.97 1.84 4.03 30 E3_Db KnownBoundary 0 11.26 14.01 7.69 7.09 3.57 8.12 4.06 9.28 17.91 18.32 0.00 25.21 0.00 7.12 0.00 10.17 3.46 0.00 4.52 5.88 0.00 0.00 8.02 31 ER3c ExonRegion 0 6.26 9.40 4.47 2.43 3.29 11.87 3.17 2.24 7.23 4.85 0.00 10.47 2.66 2.04 3.02 5.58 2.27 0.00 2.93 0.81 0.00 1.44 3.45