Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GTF2IRD2B Gene 0 9.80 22.26 23.84 33.89 20.47 14.85 11.21 20.19 22.09 21.83 2.28 2.01 3.55 5.08 6.50 6.72 3.83 27.07 13.32 15.12 7.50 5.31 8.42 2 398546 Transcript 0 9.51 7.50 3.64 7.43 8.82 13.87 10.56 6.72 4.98 5.09 0.67 1.94 5.45 3.45 6.77 13.13 2.73 17.79 11.30 5.76 3.93 1.83 8.27 3 356115 Transcript 0 9.16 9.41 25.71 40.46 20.47 7.00 5.87 18.66 17.03 16.15 0.39 1.38 5.70 1.77 3.82 3.59 1.33 21.14 13.78 16.70 5.11 3.14 3.84 4 312575 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 483059 Transcript 0 12.88 8.25 14.75 23.25 7.75 5.85 4.99 8.33 10.58 6.54 3.91 0.00 2.24 4.15 13.86 7.95 13.28 3.86 0.00 4.32 0.74 1.81 3.52 6 423666 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 412484 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 418185 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 472837 Transcript 0 0.01 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 394939 Transcript 0 22.22 22.23 40.78 46.99 48.04 37.84 27.58 23.60 22.31 19.29 1.44 1.92 4.90 8.61 7.70 16.21 4.99 28.39 23.75 36.24 7.98 6.46 17.39 11 478628 Transcript 0 5.20 24.25 16.25 19.62 38.10 6.45 12.00 13.71 13.95 11.68 0.25 0.86 7.52 0.88 2.34 3.63 1.28 12.46 10.56 9.19 1.69 1.82 1.52 12 ER1a ExonRegion 0 1.45 1.28 0.00 0.00 0.00 14.86 12.75 5.09 1.04 0.00 0.00 0.00 6.66 0.00 2.90 21.43 0.00 22.56 10.56 4.93 4.76 0.00 10.36 13 E1_Ae KnownBoundary 0 10.37 20.46 36.78 17.25 73.68 162.92 74.99 45.47 21.27 33.58 66.07 7.65 7.47 2.24 4.45 106.90 31.04 140.61 122.54 28.70 40.40 5.57 72.22 14 ER1b ExonRegion 0 2.12 2.03 0.00 0.00 0.00 20.17 13.24 6.91 1.24 0.00 0.00 0.00 9.38 0.00 2.90 26.75 0.00 31.41 15.93 6.38 6.61 0.00 14.68 15 ER1c ExonRegion 0 2.42 2.03 0.00 0.00 0.00 20.17 13.24 6.91 1.24 0.00 0.00 0.00 9.38 0.00 2.90 26.75 0.00 31.41 15.93 6.38 6.61 0.00 14.68 16 ER1d ExonRegion 0 4.23 2.03 0.00 0.00 0.00 20.17 13.24 6.91 1.24 0.00 0.00 0.00 9.38 0.00 1.61 26.75 0.00 31.41 15.93 6.38 6.61 0.00 14.68 17 ER1e ExonRegion 0 0.80 0.24 0.00 0.00 0.00 2.11 1.01 3.57 0.84 0.00 0.00 0.00 0.55 0.00 0.00 3.03 0.00 9.93 2.66 1.36 2.61 0.00 1.84 18 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 I1_SR1 SilentIntronRegion 0 2.12 7.03 11.66 7.06 5.19 2.17 4.05 10.63 8.05 15.57 0.23 0.00 1.42 0.44 2.46 5.40 6.40 20.21 2.70 21.02 20.10 9.79 5.61 20 I1_AR2 ActiveIntronRegion 0 2.82 3.88 9.60 7.34 2.31 1.76 2.30 8.67 7.19 11.27 2.10 0.00 0.54 0.70 2.90 7.42 3.48 16.12 3.19 15.45 6.80 3.43 6.48 21 I1_AR7 ActiveIntronRegion 0 4.23 9.05 14.18 12.74 8.64 3.28 5.33 9.91 6.30 13.26 0.73 0.89 3.21 1.56 5.33 4.75 1.85 27.42 15.32 10.81 2.21 3.51 11.81 22 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.73 0.31 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 2.31 3.19 1.60 1.65 0.00 0.73 23 ER2b ExonRegion 0 5.24 5.00 0.00 0.00 0.00 1.03 0.40 2.48 0.12 0.00 0.00 0.00 3.96 0.00 1.01 12.47 0.00 17.90 6.49 2.02 0.39 0.00 6.87 24 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER3a ExonRegion 0 0.00 3.01 6.79 9.31 2.95 12.69 7.48 4.58 2.14 1.12 0.72 0.00 1.42 2.79 8.37 5.20 1.35 5.13 0.00 2.34 0.68 1.53 2.01 26 E3_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER3b ExonRegion 0 12.88 8.25 14.75 23.25 7.75 5.85 4.99 8.33 10.58 6.54 3.91 0.00 2.24 4.15 13.86 7.95 13.28 3.86 0.00 4.32 0.74 1.81 3.52 29 E3_Db NovelBoundary 0 24.67 34.20 41.25 43.02 19.95 0.00 15.81 32.24 27.46 30.76 4.69 41.11 14.93 4.94 6.18 8.29 9.07 3.69 4.80 23.65 3.03 14.76 15.88 30 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 1.25 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 31 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER5a ExonRegion 0 1.76 1.59 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.34 0.86 0.00 0.00 33 E5_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E5a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER5b ExonRegion 0 8.68 8.62 0.71 3.41 4.04 7.19 4.39 1.55 0.18 1.91 0.00 0.59 1.17 0.85 3.18 1.64 0.00 5.66 0.83 0.92 0.00 0.39 2.00 36 E5b_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER5c ExonRegion 0 16.71 4.50 9.10 28.09 0.00 0.00 0.00 10.86 5.43 11.67 0.00 2.94 0.00 7.89 24.35 16.77 0.00 23.10 16.38 11.85 0.31 6.25 3.99 38 ER5d ExonRegion 0 18.41 12.61 10.20 18.87 22.42 19.54 14.52 13.50 13.72 13.36 2.00 5.24 8.52 9.49 14.23 16.32 8.20 25.15 22.50 11.43 7.04 5.11 12.46 39 E5_Dc NovelBoundary 0 6.67 19.08 11.18 18.51 29.03 5.45 15.19 18.89 16.90 37.34 0.00 0.00 0.00 11.12 15.45 24.61 18.79 27.48 8.19 9.84 17.79 3.25 31.67 40 E6_Aa NovelBoundary 0 59.42 169.84 127.49 150.00 120.46 52.36 59.75 121.54 106.10 90.87 23.48 6.30 6.82 25.37 45.99 73.91 22.72 225.30 47.44 86.54 48.74 32.76 49.51 41 ER6a ExonRegion 0 0.01 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 E6_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER6b ExonRegion 0 1.92 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 E6a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 E8_Ab NovelBoundary 0 10.59 19.14 23.62 32.96 33.87 0.00 10.33 20.87 20.51 11.42 2.63 0.00 0.00 0.00 6.30 16.24 0.00 2.57 9.32 21.67 0.00 3.12 8.11 49 ER8a ExonRegion 0 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 ER8b ExonRegion 0 1.15 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 ER9a ExonRegion 0 2.45 0.36 0.00 0.00 2.35 0.00 0.93 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 ER10a ExonRegion 0 1.15 5.52 0.00 0.00 0.00 0.00 3.29 0.00 1.22 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 55 E10a_E11b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 E11_Aa NovelBoundary 0 26.45 63.87 36.93 51.91 54.67 8.12 23.14 35.04 35.16 48.62 0.00 0.00 7.63 2.35 0.00 8.63 0.00 20.60 24.00 15.15 0.00 7.53 0.00 57 ER11a ExonRegion 0 3.26 29.41 14.39 11.53 41.23 6.25 12.56 11.08 11.24 7.56 0.00 0.00 3.61 1.42 1.41 0.00 0.00 7.91 3.27 7.26 0.40 0.00 0.00 58 E11_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 ER11b ExonRegion 0 3.96 33.80 24.92 18.43 25.71 9.72 12.76 16.57 15.27 9.73 0.00 1.41 0.73 0.84 0.72 0.50 0.00 10.01 1.90 4.78 1.26 0.00 0.00 60 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 ER12a ExonRegion 0 1.23 6.00 19.69 27.00 41.38 16.09 16.55 13.72 13.16 13.08 0.00 0.88 7.54 0.00 1.17 8.42 0.00 20.74 16.15 4.53 1.05 5.51 1.54 62 E12_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 E12a_E14a NovelJunction 0 3.56 9.41 6.18 17.75 4.24 24.64 8.17 16.31 20.60 15.61 0.00 0.00 0.00 0.00 4.45 0.00 0.00 4.81 16.57 3.07 14.83 8.94 3.41 65 ER12b ExonRegion 0 7.14 19.10 18.12 27.71 34.97 6.65 11.45 16.34 16.65 15.80 0.50 1.71 11.43 0.35 3.27 7.26 2.56 17.00 17.85 11.12 2.98 3.64 3.04 66 E12_Db NovelBoundary 0 6.08 30.13 3.67 17.45 20.80 15.50 32.15 23.70 13.19 8.22 2.26 0.00 0.00 0.00 0.00 8.54 0.00 10.45 31.53 11.70 5.99 0.00 4.35 67 ER13a ExonRegion 0 1.17 11.52 10.39 18.46 4.96 4.59 3.29 12.42 9.16 11.16 0.60 0.00 0.15 1.62 2.52 5.01 0.91 7.80 6.27 11.68 1.50 1.39 3.59 68 E13a_E14a KnownJunction 0 0.00 12.43 35.07 66.72 23.17 17.15 7.77 38.61 35.94 28.21 0.00 0.00 0.00 0.00 0.00 22.13 0.00 20.27 13.18 0.00 2.66 5.20 0.00 69 E14_Aa NovelBoundary 0 0.00 0.00 11.80 7.96 19.35 0.00 8.26 12.32 5.27 6.50 0.00 0.00 0.00 4.77 4.45 4.36 0.00 4.15 9.60 3.26 3.15 3.12 0.00 70 ER14a ExonRegion 0 12.92 56.24 46.27 80.50 87.19 63.23 66.97 42.38 43.65 36.50 1.93 0.30 5.66 19.60 4.70 29.93 1.94 39.76 43.17 33.46 12.39 7.54 20.15 71 ER14b ExonRegion 0 22.22 22.23 40.78 46.99 48.04 37.84 27.58 23.60 22.31 19.29 1.44 1.92 4.90 8.61 7.70 16.21 4.99 28.39 23.75 36.24 7.98 6.46 17.39 72 E14_Db NovelBoundary 0 24.97 44.99 81.43 113.41 164.43 49.74 66.33 36.15 45.51 31.35 2.68 0.00 13.64 7.42 13.85 11.71 7.95 57.66 67.48 55.93 13.90 5.14 4.18 73 ER15a ExonRegion 0 9.16 9.41 25.71 40.46 20.47 7.00 5.87 18.66 17.03 16.15 0.39 1.38 5.70 1.77 3.82 3.59 1.33 21.14 13.78 16.70 5.11 3.14 3.84 74 ER16a ExonRegion 0 14.08 43.75 44.52 61.24 31.35 25.23 17.74 37.42 43.56 43.89 4.78 3.24 3.34 8.95 9.24 7.58 5.95 50.38 20.36 26.91 15.03 10.41 14.98 75 ER16b ExonRegion 0 0.00 0.00 1.23 1.36 2.68 5.50 0.00 1.73 1.24 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00