Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PPP1R9A Gene 0 10.15 66.75 23.48 45.49 46.22 53.77 44.04 43.04 41.88 47.48 0.00 0.30 0.16 0.12 0.20 0.03 0.05 28.70 103.91 74.33 6.94 1.28 0.98 2 413325 Transcript 0 0.45 0.00 0.00 0.01 0.57 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 3 433360 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 340694 Transcript 0 0.00 5.92 0.00 3.47 4.14 0.00 4.69 1.73 0.34 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 5 424654 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.00 0.00 0.00 0.00 0.00 6 422324 Transcript 0 0.00 0.30 0.00 0.00 0.00 0.23 1.34 1.07 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.47 6.05 0.00 0.00 0.00 7 433881 Transcript 0 0.17 1.15 0.29 2.25 3.79 1.92 11.47 1.70 5.58 3.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 23.67 15.47 0.00 0.00 0.00 8 456331 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 394364 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 289495 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 ER1a ExonRegion 0 0.90 0.00 0.00 0.01 1.14 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.76 0.00 0.00 0.00 0.00 12 E1a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER2a ExonRegion 0 0.00 3.39 0.00 0.84 0.00 1.41 5.64 2.79 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 2.70 12.11 2.94 0.00 0.00 14 E2a_E5a KnownJunction 0 7.56 19.80 0.00 3.70 0.00 2.61 7.77 5.59 7.55 2.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.75 28.05 50.49 0.00 0.00 0.00 15 ER2b ExonRegion 0 3.76 14.69 0.09 2.57 0.00 3.67 9.27 3.97 5.49 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.25 18.76 39.40 3.67 0.00 0.00 16 ER3a ExonRegion 0 0.00 0.60 0.00 0.00 0.00 0.47 0.86 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.94 2.89 0.00 0.00 0.00 17 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.81 2.14 2.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.20 0.00 0.00 0.00 18 E4_Aa NovelBoundary 0 0.00 16.64 3.31 9.26 14.60 11.02 22.61 10.19 1.79 7.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.00 22.97 8.05 0.00 0.00 0.00 19 ER4a ExonRegion 0 0.34 2.30 0.59 2.44 3.77 3.85 3.65 1.72 2.43 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.47 22.02 11.06 0.00 0.00 0.00 20 E4a_E5a KnownJunction 0 0.00 0.00 0.00 2.06 3.82 0.00 19.30 1.68 8.74 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.06 25.32 19.88 0.00 0.00 0.00 21 ER5a ExonRegion 0 2.30 17.76 6.86 10.52 4.45 9.76 21.51 14.21 21.24 20.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.80 49.15 69.16 6.71 0.57 0.81 22 E5_Ab KnownBoundary 0 6.52 48.15 11.80 23.04 10.78 10.51 19.92 14.13 19.50 24.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.51 78.97 84.18 11.06 0.00 0.00 23 ER5b ExonRegion 0 0.07 25.95 9.88 16.37 8.11 11.43 41.45 18.75 26.63 22.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.83 80.56 80.04 3.63 2.07 0.00 24 E5_Da KnownBoundary 0 0.00 20.92 6.30 18.78 12.05 26.75 51.10 16.27 23.03 16.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.13 78.50 88.91 0.00 0.00 0.00 25 ER5c ExonRegion 0 2.87 22.33 8.75 15.71 5.21 25.69 35.18 24.60 35.12 21.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.00 77.99 75.18 2.62 1.91 0.00 26 E5_Db KnownBoundary 0 14.52 22.04 21.20 16.85 7.72 19.02 44.87 26.74 33.62 23.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.77 133.56 93.32 2.72 2.82 0.00 27 ER5d ExonRegion 0 3.27 28.16 15.55 21.48 15.11 25.00 43.95 23.55 37.72 30.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.98 90.93 96.44 8.63 0.84 0.76 28 E5c_E6a KnownJunction 0 0.00 59.46 45.86 37.76 15.62 5.68 43.15 33.02 39.87 24.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.43 72.38 98.75 3.03 0.00 0.00 29 I5_AR15 ActiveIntronRegion 0 0.00 2.03 1.94 2.65 7.58 0.00 21.29 6.19 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 5.08 0.00 0.00 0.00 30 ER6a ExonRegion 0 5.16 43.88 29.44 37.22 23.92 21.30 41.86 31.72 41.83 28.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.67 85.05 96.29 4.18 0.96 0.82 31 E6a_E7a KnownJunction 0 6.52 65.25 38.29 56.67 38.12 76.15 77.06 35.32 45.92 27.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.70 87.25 106.87 11.68 2.51 3.84 32 ER7a ExonRegion 0 2.20 69.06 30.33 45.23 25.32 29.60 52.43 31.01 35.99 25.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.81 106.64 108.88 4.99 0.71 1.58 33 E7a_E8a KnownJunction 0 0.00 75.78 27.70 38.26 20.63 13.23 45.62 29.33 38.63 28.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62.35 78.59 128.92 14.15 0.00 0.00 34 ER8a ExonRegion 0 7.44 41.49 35.57 33.33 9.28 21.59 28.93 32.61 35.83 26.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45.01 78.57 121.11 8.54 1.01 1.43 35 E8a_E9a KnownJunction 0 7.04 24.60 27.29 14.18 7.30 32.48 33.74 17.87 32.61 29.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46.47 60.05 140.49 14.52 0.00 0.00 36 ER9a ExonRegion 0 2.68 42.71 31.78 32.60 19.06 24.34 30.02 26.55 35.41 26.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60.24 114.60 118.90 8.56 0.41 0.80 37 E9_Da NovelBoundary 0 0.00 3.29 1.71 6.96 0.00 5.68 4.50 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.80 22.31 2.88 8.71 0.00 0.00 38 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.85 0.00 0.00 39 E9a_E11a KnownJunction 0 6.22 55.58 8.72 26.00 35.14 30.78 27.82 7.48 22.60 19.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53.06 137.79 87.44 3.15 3.12 3.84 40 ER10a ExonRegion 0 0.00 3.14 0.09 1.30 6.04 4.25 3.07 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.46 4.80 10.68 0.35 0.00 41 E10a_E11a KnownJunction 0 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 2.57 0.00 42 Ix_AR1 ActiveIntronRegion 0 6.24 21.09 4.10 11.45 6.50 2.27 11.91 4.63 5.77 5.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.18 8.17 9.78 0.96 0.00 0.32 43 ER11a ExonRegion 0 3.31 30.50 18.89 29.54 17.10 32.51 32.00 15.27 30.42 24.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.99 88.58 85.26 13.96 0.85 0.26 44 E11a_E12a KnownJunction 0 3.78 32.17 24.60 43.45 19.27 40.03 44.69 21.77 32.78 22.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46.18 86.59 99.39 14.33 0.00 0.00 45 ER12a ExonRegion 0 5.84 32.09 23.96 33.39 45.29 39.90 42.17 22.60 30.97 24.87 0.00 0.88 0.00 0.00 0.00 0.00 0.00 38.60 113.79 88.69 10.61 1.27 0.00 46 E12a_E13a KnownJunction 0 9.78 34.53 15.46 30.27 75.98 45.66 32.64 23.08 32.99 24.36 0.00 6.30 0.00 0.00 0.00 0.00 0.00 23.55 132.80 94.98 0.00 3.00 0.00 47 ER13a ExonRegion 0 3.70 32.81 24.84 48.60 29.98 38.24 34.05 26.79 36.82 25.28 0.00 0.75 0.00 0.00 0.00 0.00 0.00 22.58 106.72 86.42 7.19 0.81 0.65 48 E13a_E14a KnownJunction 0 10.37 65.98 20.76 80.64 78.27 63.26 95.66 37.58 41.43 44.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 136.10 100.35 11.49 3.12 0.00 49 ER14a ExonRegion 0 4.08 34.26 25.44 41.31 38.92 58.49 45.19 29.03 33.18 42.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.49 98.94 83.29 4.25 1.76 1.09 50 E14a_E15a KnownJunction 0 2.89 43.41 22.68 37.79 33.11 55.93 20.40 43.29 32.23 33.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31.30 67.20 108.28 3.09 0.00 3.93 51 ER15a ExonRegion 0 4.48 29.92 17.03 31.48 26.31 28.83 33.39 36.28 34.20 34.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40.93 101.36 76.69 8.53 2.47 1.13 52 E15a_E16a KnownJunction 0 0.00 15.92 17.65 18.55 21.22 41.34 32.42 33.23 34.90 36.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51.61 85.08 103.35 2.90 0.00 0.00 53 ER16a ExonRegion 0 1.39 27.66 12.02 24.39 22.25 36.49 28.84 33.37 41.44 33.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46.49 88.04 70.60 11.77 3.32 0.95 54 E16a_E17a KnownJunction 0 0.00 3.35 0.00 7.06 15.62 11.53 4.11 4.85 4.86 2.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.57 35.30 14.38 5.75 0.00 0.00 55 E16a_E21a KnownJunction 0 0.00 25.26 16.29 20.51 8.23 27.71 21.33 35.86 45.63 22.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36.69 65.60 36.62 0.00 0.00 0.00 56 ER17a ExonRegion 0 1.08 8.55 3.39 10.54 4.90 7.21 11.33 5.71 7.62 6.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.76 54.76 37.82 9.74 1.09 0.00 57 E17a_E18a KnownJunction 0 0.00 18.81 3.67 1.86 3.82 16.13 10.64 0.00 8.07 7.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.27 41.41 27.68 0.00 0.00 0.00 58 ER18a ExonRegion 0 1.20 12.27 5.53 6.09 4.17 4.29 9.76 0.65 3.64 4.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.85 27.40 30.95 4.76 1.21 0.00 59 E18a_E19a KnownJunction 0 7.33 14.47 6.71 13.32 3.99 0.00 8.35 4.60 3.04 4.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.79 44.90 51.90 8.59 0.00 0.00 60 ER19a ExonRegion 0 3.88 17.38 3.01 8.37 7.55 14.26 11.25 0.88 9.34 6.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.80 51.31 38.42 9.76 0.87 2.83 61 E19a_E20a KnownJunction 0 0.00 16.25 1.36 3.70 0.00 15.67 12.01 0.00 15.83 9.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.10 42.35 60.15 22.61 2.88 4.35 62 ER20a ExonRegion 0 1.63 10.54 4.61 7.03 6.72 9.23 11.30 7.53 13.92 9.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.54 61.72 57.63 11.94 0.70 2.57 63 E20_Da KnownBoundary 0 0.00 16.97 0.00 7.72 19.61 13.23 8.66 7.52 7.18 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.36 43.01 48.90 2.59 0.00 0.00 64 E20a_E21a KnownJunction 0 0.00 31.51 1.51 3.33 8.23 0.00 2.16 0.00 1.79 6.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.56 22.40 27.42 13.96 0.00 0.00 65 ER20b ExonRegion 0 0.00 3.85 2.57 3.97 6.41 11.07 14.78 8.51 10.11 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.75 29.42 29.54 1.76 0.00 0.00 66 E20b_E21a KnownJunction 0 0.00 12.83 1.18 0.00 12.73 0.00 9.89 2.05 7.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.04 13.08 16.75 0.00 0.00 0.00 67 E21_Aa NovelBoundary 0 0.00 12.17 0.00 7.29 4.33 8.63 10.29 9.73 11.83 2.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.24 3.48 22.37 2.47 0.00 0.00 68 ER21a ExonRegion 0 3.99 44.11 13.29 21.70 25.58 32.73 30.86 29.23 40.99 33.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66.29 114.35 86.26 13.83 1.75 0.00 69 E21a_E22a KnownJunction 0 0.00 15.59 4.67 12.15 30.05 27.94 21.42 16.31 29.95 22.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.86 98.45 67.37 0.00 0.00 0.00 70 E21a_E23a KnownJunction 0 6.59 0.00 1.83 0.00 0.00 0.00 0.00 0.00 2.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 3.76 0.00 5.37 0.00 0.00 71 E21a_E24a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.00 0.00 0.00 0.00 0.00 72 E22a_E23a KnownJunction 0 0.00 15.85 25.55 18.85 19.44 8.46 23.49 13.64 22.42 22.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45.68 92.24 69.61 0.00 0.00 0.00 73 ER22a ExonRegion 0 0.00 16.95 13.99 19.48 26.09 24.99 25.16 21.03 33.91 30.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58.90 120.11 78.90 0.00 0.00 0.00 74 ER23a ExonRegion 0 6.04 45.79 23.82 32.68 24.07 30.21 36.51 27.06 30.90 43.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66.90 105.99 91.74 11.85 1.74 1.64 75 E23a_E24a KnownJunction 0 9.85 69.66 38.23 50.68 40.41 35.43 59.49 30.93 38.71 57.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84.27 123.58 103.80 8.22 0.00 0.00 76 ER24a ExonRegion 0 7.39 49.50 32.19 48.06 36.87 43.07 46.81 38.68 49.33 44.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69.68 142.97 94.85 16.78 0.80 1.13 77 E24_Da KnownBoundary 0 6.67 19.86 17.65 25.60 15.28 14.99 33.65 18.81 20.78 23.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.74 89.51 50.62 15.69 0.00 0.00 78 E24_Db KnownBoundary 0 6.37 8.35 6.15 17.78 7.98 24.47 27.69 19.72 15.71 17.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.01 74.07 59.51 7.97 0.00 0.00 79 ER24b ExonRegion 0 3.76 21.24 18.11 33.31 20.51 28.32 43.10 36.30 36.78 36.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.73 135.91 80.14 20.57 0.00 0.00 80 ER24c ExonRegion 0 3.81 42.36 10.95 24.14 35.87 39.86 39.40 31.82 45.08 43.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47.93 114.79 93.98 9.94 0.59 0.84 81 E24_Dc KnownBoundary 0 0.00 64.86 11.32 27.00 47.96 23.79 56.57 33.52 39.00 41.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.77 67.30 85.46 0.00 0.00 0.00 82 ER24d ExonRegion 0 18.49 112.05 34.84 73.11 78.77 88.27 59.61 68.51 56.11 73.10 0.00 0.61 0.34 0.26 0.44 0.06 0.10 22.67 129.16 73.99 5.60 1.72 1.28 83 ER24e ExonRegion 0 0.00 5.92 0.00 3.47 4.14 0.00 4.69 1.73 0.34 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 84 IG33 Intergenic 0 2.38 18.03 2.48 4.57 5.27 2.75 4.16 6.04 4.06 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 3.74 4.89 0.52 0.39 0.00 85 IG33_SR1 SilentIntergenicRegion 0 2.38 17.00 2.71 6.33 6.76 4.60 4.75 8.15 3.56 4.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 4.95 5.64 0.54 0.04 0.00 86 IG33_SR2 SilentIntergenicRegion 0 2.39 18.45 2.35 3.48 4.27 1.60 3.77 4.70 4.35 4.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 2.99 4.39 0.51 0.60 0.00