Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	TRIM4	Gene	0	59.10	29.81	57.18	91.21	58.51	26.77	51.96	36.10	31.07	42.68	63.69	59.56	46.54	69.34	53.14	56.71	48.46	41.03	45.44	34.47	59.56	54.25	46.88
2	349062	Transcript	0	5.56	0.00	9.44	8.00	3.90	8.12	16.44	0.22	2.61	4.16	5.44	0.00	0.00	6.50	9.45	1.66	10.42	6.65	10.33	8.97	8.25	5.30	12.63
3	355947	Transcript	0	1.85	0.89	0.40	2.26	4.75	0.01	9.07	0.55	0.01	4.30	5.61	4.34	5.17	0.29	0.53	6.23	2.68	1.79	2.63	4.39	0.00	2.50	0.23
4	354241	Transcript	0	54.39	20.33	35.24	121.68	51.54	20.51	61.87	28.38	13.73	32.87	35.48	63.83	50.47	27.95	18.91	63.14	41.08	28.59	27.89	25.32	11.31	10.76	8.09
5	447480	Transcript	0	0.02	0.01	0.00	1.28	0.04	0.00	0.05	0.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.61	0.00	0.08	0.00	0.00	0.00	2.45
6	496896	Transcript	0	10.78	4.94	16.04	27.91	17.49	4.81	28.31	5.97	9.41	10.40	13.77	27.59	18.94	8.92	9.42	13.03	9.41	11.33	4.83	13.92	5.92	9.22	6.83
7	ER1a	ExonRegion	0	5.56	0.00	9.44	8.00	3.90	8.12	16.44	0.22	2.61	4.16	5.44	0.00	0.00	6.50	9.45	1.66	10.42	6.65	10.33	8.97	8.25	5.30	12.63
8	E1_Ab	KnownBoundary	0	25.56	0.00	22.23	19.11	10.53	18.23	25.31	0.00	8.54	10.61	35.90	0.00	0.00	14.66	33.99	20.08	43.38	16.42	30.87	14.64	34.84	27.13	59.07
9	ER1b	ExonRegion	0	5.29	0.32	26.09	11.30	3.59	7.87	8.99	6.23	6.66	13.49	12.92	0.00	0.00	10.47	23.82	7.59	25.45	4.18	12.24	9.80	16.06	11.84	25.58
10	E1_Ac	KnownBoundary	0	5.70	0.00	31.90	22.57	0.00	0.00	0.00	18.40	5.67	20.47	6.37	0.00	0.00	7.00	13.23	7.69	3.55	1.58	7.15	16.30	7.97	7.90	3.84
11	ER1c	ExonRegion	1	7.27	5.41	22.97	14.18	5.69	8.50	11.64	13.32	6.66	16.22	51.41	4.65	7.11	44.49	31.41	34.79	41.83	35.23	16.67	24.30	59.78	23.46	30.84
12	E1_Ad	KnownBoundary	0	10.30	32.43	39.74	29.40	22.67	15.33	35.77	12.94	15.45	24.31	54.01	5.85	13.15	68.22	75.28	44.60	57.69	42.78	8.66	63.34	69.99	27.31	15.45
13	ER1d	ExonRegion	1	44.76	24.11	49.93	54.40	24.64	17.46	24.59	16.58	18.94	31.12	104.11	14.25	17.64	131.88	78.30	97.74	66.09	68.83	44.10	52.33	141.75	43.30	50.60
14	E1_Da	NovelBoundary	0	16.15	5.92	18.57	14.18	0.00	2.21	1.90	11.71	3.44	3.79	9.00	7.20	0.00	4.41	4.45	8.72	4.58	10.49	0.00	15.28	5.62	3.12	0.00
15	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	4.33	0.00	0.00	0.00	0.00	0.00	2.68	0.00	0.00	0.00	0.00	3.67	0.00	0.00	4.80	3.26	0.00	5.33	0.00
16	E1a_E3a	KnownJunction	1	73.27	18.15	77.58	51.24	23.43	20.22	36.57	17.37	12.01	34.22	100.66	24.31	0.00	145.15	74.17	80.49	81.53	91.20	55.25	47.87	175.20	63.07	96.20
17	I1	Intron	0	12.76	4.27	11.25	26.09	14.56	6.01	11.02	6.75	4.46	9.07	5.19	3.62	5.97	3.26	6.29	4.48	4.98	4.64	3.76	9.62	3.18	1.91	4.81
18	I1_AR1	ActiveIntronRegion	0	6.80	6.39	10.59	35.08	14.66	1.60	11.24	11.24	4.81	8.90	6.54	4.86	5.32	3.81	7.99	7.12	6.24	7.38	3.61	8.21	3.34	1.57	2.77
19	I1_SR1	SilentIntronRegion	0	2.07	1.73	12.95	21.95	9.40	5.79	5.32	3.35	3.72	11.12	4.59	3.90	4.30	2.42	4.39	2.59	3.51	1.42	2.15	7.16	1.54	1.77	3.71
20	I1_AR2	ActiveIntronRegion	0	44.21	3.87	19.86	28.27	25.09	23.31	25.72	5.44	8.59	14.04	8.48	3.57	12.59	7.32	5.65	4.01	8.80	9.92	11.54	23.03	9.53	4.61	11.18
21	I1_SR2	SilentIntronRegion	0	16.92	4.85	3.29	15.18	14.80	1.24	8.74	5.22	1.96	2.42	1.31	1.03	4.85	0.55	6.80	3.17	2.23	0.93	0.76	6.04	0.74	0.72	5.43
22	E2_Aa	NovelBoundary	0	21.19	6.64	7.04	17.51	8.66	2.38	24.60	2.05	10.56	6.42	0.00	0.00	6.82	0.00	0.00	8.72	4.30	2.57	0.00	12.21	0.00	0.00	0.00
23	ER2a	ExonRegion	0	5.54	2.66	1.21	3.44	9.91	0.02	18.20	1.64	0.02	7.19	3.89	6.72	2.04	0.87	1.60	7.32	3.26	3.58	3.10	3.52	0.00	2.16	0.68
24	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	3.33	0.00	0.00	9.01	0.00	0.00	5.72	10.27	6.30	13.47	0.00	0.00	7.69	4.77	1.78	0.00	6.39	0.00	0.00	0.00
25	I2	Intron	0	11.69	4.78	4.41	19.21	12.00	3.88	11.18	4.80	4.13	5.68	1.19	4.82	6.67	1.23	4.11	2.45	2.38	2.39	2.70	5.36	1.82	2.07	1.99
26	I2_AR1	ActiveIntronRegion	0	14.85	8.15	6.41	31.82	13.08	5.97	9.79	8.39	6.00	10.92	4.36	3.57	3.91	0.91	7.14	4.47	3.72	4.38	5.19	7.47	4.69	2.35	2.58
27	E3_Aa	NovelBoundary	0	39.78	6.38	7.66	27.90	52.29	2.56	11.88	0.00	1.79	4.11	0.00	7.65	6.82	2.30	5.44	11.28	0.00	5.14	4.71	6.46	3.15	0.00	6.49
28	ER3a	ExonRegion	1	69.68	22.98	65.02	96.85	47.19	41.54	61.41	42.20	40.41	47.06	147.51	39.10	76.68	157.15	90.26	124.73	106.99	98.17	101.27	67.04	163.98	85.99	103.71
29	E3_Ab	KnownBoundary	1	84.53	51.57	81.13	162.82	105.01	33.05	86.38	65.80	66.93	61.86	174.89	61.37	177.91	148.39	116.32	113.47	116.97	81.87	109.56	89.55	165.63	97.36	85.28
30	ER3b	ExonRegion	1	77.86	31.86	75.34	155.00	80.92	27.51	75.39	60.13	46.34	68.68	159.96	45.66	91.24	149.27	75.87	96.19	117.23	94.01	92.76	81.43	130.69	80.18	94.51
31	E3a_E4a	KnownJunction	1	115.43	22.89	79.57	173.20	109.68	38.05	93.49	56.15	33.07	77.63	162.67	44.11	41.07	175.59	60.08	94.85	132.12	105.50	94.03	87.12	126.52	67.48	118.31
32	ER4a	ExonRegion	0	74.44	39.52	99.73	196.13	113.18	47.21	102.24	68.63	47.11	86.45	173.22	185.32	133.66	176.87	98.47	142.01	134.47	119.34	124.84	73.11	167.04	115.42	122.47
33	E4_Da	KnownBoundary	0	23.63	0.00	10.35	22.11	0.00	0.00	21.99	11.54	2.49	8.84	25.06	17.56	13.47	12.60	9.89	15.30	15.80	10.65	0.00	23.65	17.85	2.39	7.60
34	E4a_E5a	KnownJunction	1	62.38	39.66	53.49	121.70	121.56	68.03	81.79	34.58	40.60	73.49	122.77	296.80	142.20	158.93	116.57	78.44	68.63	80.46	133.65	36.69	176.68	98.40	88.44
35	ER4b	ExonRegion	0	10.78	4.94	16.04	27.91	17.49	4.81	28.31	5.97	9.41	10.40	13.77	27.59	18.94	8.92	9.42	13.03	9.41	11.33	4.83	13.92	5.92	9.22	6.83
36	E4_Db	NovelBoundary	1	25.12	3.22	5.91	29.83	34.47	9.71	35.77	10.31	11.55	17.89	7.16	12.45	34.09	12.13	21.51	23.16	9.44	0.00	0.00	24.99	2.66	16.78	7.85
37	I4	Intron	0	13.57	4.49	12.53	22.62	16.05	6.01	25.38	10.04	9.08	7.90	9.06	19.54	19.25	7.71	9.19	7.07	9.33	7.71	7.47	11.59	4.02	8.12	4.86
38	I4_SR1	SilentIntronRegion	0	14.43	2.71	11.05	20.62	14.79	5.33	26.38	9.21	9.47	7.50	9.58	23.75	24.06	7.72	11.09	6.94	6.77	5.13	7.29	11.66	2.52	9.14	5.32
39	I4_AR1	ActiveIntronRegion	0	9.04	8.83	16.81	32.73	20.55	8.48	23.97	12.77	8.93	10.26	8.15	10.39	8.04	8.06	4.21	8.18	17.73	15.71	7.77	12.19	7.91	6.10	3.62
40	I4_SR2	SilentIntronRegion	0	19.51	10.37	15.32	11.78	15.68	5.52	19.18	10.52	5.14	4.66	6.39	2.40	2.14	6.57	4.32	4.94	10.66	10.40	8.73	9.00	8.29	3.37	3.86
41	E5a_E6a	KnownJunction	0	55.27	57.88	65.52	115.20	107.89	34.30	124.32	35.73	32.29	60.73	114.40	164.30	93.18	135.44	95.19	103.90	128.66	60.11	36.14	56.95	123.43	92.10	135.47
42	ER5a	ExonRegion	0	56.13	50.40	76.83	151.81	124.71	64.02	102.52	50.50	49.46	89.41	159.34	265.79	134.79	173.92	107.72	119.53	125.00	95.52	105.67	51.16	200.25	113.05	130.62
43	I5	Intron	0	10.79	5.19	13.61	21.51	15.75	3.24	11.69	9.09	5.05	4.02	3.79	3.50	4.11	4.27	5.89	7.58	7.77	10.08	5.62	10.02	4.75	1.63	7.49
44	I5_SR1	SilentIntronRegion	0	10.87	5.23	13.71	21.67	15.87	3.26	11.78	9.16	5.09	4.05	3.82	3.52	4.13	4.31	5.93	7.63	7.83	10.16	5.67	10.09	4.77	1.65	7.55
45	E6_Aa	NovelBoundary	0	2.82	17.56	29.27	25.01	31.41	2.90	37.14	8.95	7.75	7.55	0.00	6.30	20.29	2.12	0.00	4.02	8.79	5.97	29.74	8.63	3.15	0.00	4.35
46	ER6a	ExonRegion	0	80.67	82.30	103.48	189.40	126.06	51.33	121.80	64.62	60.99	86.47	170.53	219.92	130.51	168.33	90.53	138.81	139.82	102.46	128.00	72.97	170.36	146.91	119.98
47	E6_Da	NovelBoundary	0	20.82	9.14	11.09	52.41	36.59	20.39	40.63	10.31	19.18	17.00	19.43	24.46	27.11	7.30	10.38	4.36	9.16	10.99	4.80	11.57	4.88	0.00	3.67
48	E6a_E7a	KnownJunction	0	40.08	5.20	21.26	83.17	33.02	22.09	53.57	23.17	6.48	23.61	31.38	64.82	42.53	21.54	9.64	74.34	40.95	24.50	27.01	11.70	11.49	3.12	0.00
49	E6a_E8a	KnownJunction	0	48.38	63.15	119.39	108.21	72.24	39.58	47.65	36.64	57.38	65.68	116.35	133.09	48.21	117.55	96.30	84.42	64.52	49.54	99.86	48.39	132.02	174.39	93.81
50	E6a_E9a	KnownJunction	0	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.74	0.00	0.00	0.00	0.00	0.00	4.27
51	I6	Intron	0	19.24	5.49	9.08	39.25	27.75	8.34	24.83	11.35	7.32	10.20	7.41	17.20	19.05	6.35	10.16	14.78	19.23	9.27	10.86	12.69	5.95	4.44	9.60
52	I6_SR1	SilentIntronRegion	0	19.30	5.50	9.10	39.35	27.83	8.36	24.90	11.38	7.34	10.23	7.43	17.25	19.10	6.36	10.19	14.82	19.28	9.30	10.89	12.73	5.96	4.45	9.62
53	E7_Aa	NovelBoundary	0	28.00	9.41	27.47	119.37	53.57	19.02	45.97	31.42	20.08	22.67	15.00	26.11	26.13	9.65	12.36	10.94	27.40	6.43	4.42	27.42	0.00	10.47	12.12
54	ER7a	ExonRegion	1	68.69	35.46	49.21	160.19	70.06	18.93	70.18	33.59	20.98	42.13	39.59	62.84	58.41	34.35	28.19	51.93	41.20	32.68	28.77	38.95	11.12	18.39	16.17
55	E7_Da	NovelBoundary	1	102.98	28.35	98.93	322.44	181.15	41.57	162.12	36.88	17.51	38.47	38.64	99.78	63.47	33.79	10.51	22.30	32.63	8.25	23.91	34.90	8.71	20.45	3.59
56	I7	Intron	0	16.18	3.28	3.32	13.46	26.28	6.55	11.93	4.42	5.81	4.86	3.32	8.88	5.96	6.46	5.87	7.50	8.22	4.09	3.79	8.73	2.32	2.63	4.74
57	I7_SR2	SilentIntronRegion	0	12.55	3.38	0.88	1.45	5.13	3.48	11.31	1.23	0.00	1.64	3.25	3.64	4.86	3.69	6.80	9.94	7.94	2.84	2.30	10.60	3.14	0.99	8.36
58	I7_SR3	SilentIntronRegion	0	21.97	3.73	4.32	18.04	36.48	7.26	13.03	5.17	6.44	5.07	3.44	10.95	6.04	6.41	6.48	7.75	7.83	2.89	3.39	6.69	1.83	3.21	3.83
59	ER8a	ExonRegion	0	74.83	35.51	71.82	79.03	67.18	35.75	51.30	45.21	43.16	49.85	68.93	60.20	44.17	83.31	70.53	58.51	46.86	40.12	54.07	32.89	70.93	76.14	59.63
60	E8_Da	NovelBoundary	0	31.49	0.00	0.00	8.76	14.09	0.00	19.48	0.00	5.24	11.36	2.05	6.30	6.82	0.00	0.00	14.27	8.88	6.72	0.00	8.56	4.63	13.17	28.77
61	ER9a	ExonRegion	0	0.05	0.02	0.00	0.99	0.09	0.00	0.10	0.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.47	0.00	0.17	0.00	0.00	0.00	0.62