Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C7orf23 Gene 0 106.52 20.56 51.05 27.53 64.75 28.38 39.55 29.13 15.65 23.09 109.77 131.11 109.63 95.39 142.50 88.24 99.08 6.76 12.32 15.50 16.81 57.50 22.82 2 433078 Transcript 1 5.86 2.38 12.20 0.70 2.63 5.64 1.23 1.11 0.87 3.92 56.87 0.00 3.41 47.71 31.00 22.12 29.20 5.61 9.43 1.21 19.46 2.64 12.47 3 455575 Transcript 0 1.52 1.78 5.69 0.72 1.45 1.33 2.56 0.91 0.86 0.26 5.08 2.47 0.00 11.48 4.58 9.41 7.28 0.89 3.16 0.75 6.80 2.11 5.07 4 257637 Transcript 0 25.40 2.16 3.06 2.47 3.51 3.09 2.98 0.22 0.77 1.43 14.62 3.52 0.29 11.37 11.42 14.12 16.50 1.15 0.60 0.00 4.41 3.00 2.94 5 423734 Transcript 0 16.93 4.07 5.55 0.00 5.82 0.11 2.65 2.64 0.29 1.08 3.30 1.02 5.52 0.57 4.44 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.69 6 474074 Transcript 1 49.40 6.84 9.89 5.15 25.92 6.16 13.45 14.65 10.31 11.98 6.21 14.14 26.68 4.67 16.09 10.62 14.57 1.33 2.14 5.30 0.44 3.42 2.86 7 481425 Transcript 0 3.85 0.28 0.51 1.99 3.38 0.00 3.15 1.08 0.77 0.48 2.71 15.41 3.89 3.43 1.85 7.08 6.96 1.16 1.79 2.68 1.54 0.61 2.48 8 465976 Transcript 0 3.40 0.00 0.11 0.01 11.94 0.58 4.22 0.82 1.15 1.06 5.53 2.27 3.93 3.54 1.60 8.36 6.44 1.40 2.03 0.68 0.70 0.00 1.87 9 492231 Transcript 0 32.23 5.24 11.63 5.18 13.48 5.93 10.57 6.81 4.39 7.57 11.51 12.08 19.24 8.04 12.69 18.90 19.78 4.17 5.91 5.18 2.63 5.78 5.35 10 ER1a ExonRegion 0 11.71 4.77 1.23 0.00 1.52 11.29 2.47 0.33 0.00 2.04 20.40 0.00 0.00 29.74 19.61 30.75 18.67 4.71 5.49 2.42 9.38 2.59 9.92 11 E1_Ab KnownBoundary 1 67.86 14.54 11.95 0.00 11.80 39.69 13.87 1.60 0.00 7.09 64.81 0.00 13.80 67.93 41.29 88.95 29.83 15.46 22.31 5.50 28.05 15.61 46.78 12 ER1b ExonRegion 1 28.09 3.93 12.35 1.97 4.53 14.93 8.74 2.38 0.42 4.99 52.99 2.48 5.52 52.29 41.96 54.10 40.80 12.06 11.86 3.02 29.30 9.05 16.77 13 E1_Da KnownBoundary 0 0.00 0.00 12.48 0.00 0.00 2.33 0.00 0.00 3.27 4.97 6.84 0.00 0.00 21.60 9.52 0.00 11.97 5.02 4.80 0.00 21.07 3.00 3.67 14 E1a_E2b KnownJunction 1 0.00 0.00 23.18 1.40 3.74 0.00 0.00 1.89 1.74 5.80 93.34 0.00 6.82 65.69 42.40 13.50 39.74 6.51 13.37 0.00 29.53 2.69 15.02 15 E1a_E5b NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.32 0.00 0.00 4.59 11.25 4.36 17.39 0.00 0.00 0.00 0.00 0.00 0.00 16 ER1c ExonRegion 0 3.04 3.56 10.08 1.44 2.90 2.66 0.70 1.82 1.72 0.53 7.84 4.93 0.00 18.02 9.17 18.82 6.33 1.78 6.33 1.51 8.34 4.21 10.14 17 E1_Db NovelBoundary 0 3.63 3.35 6.21 0.00 23.34 17.89 6.40 0.00 2.43 2.93 9.37 11.70 8.28 14.48 0.00 11.79 17.86 7.50 0.00 11.82 0.00 3.00 8.71 18 E1b_E2b KnownJunction 0 0.00 0.00 1.30 0.00 0.00 0.00 4.42 0.00 0.00 0.00 2.32 0.00 0.00 4.94 0.00 0.00 8.23 0.00 0.00 0.00 5.25 0.00 0.00 19 I1 Intron 0 11.59 7.67 6.89 1.98 3.91 5.36 4.03 0.00 0.45 3.54 7.29 2.70 2.85 21.92 12.67 14.11 12.86 3.02 4.65 6.73 2.41 4.56 7.15 20 I1_AR1 ActiveIntronRegion 0 12.03 7.81 7.56 2.09 4.45 5.05 3.96 0.00 0.51 3.79 7.67 2.49 3.25 22.01 13.69 14.22 13.59 2.82 4.82 6.89 2.46 4.69 8.12 21 I1_SR1 SilentIntronRegion 0 9.27 7.23 2.31 1.30 0.00 8.44 5.12 0.00 0.00 1.96 5.20 4.33 0.00 24.00 5.80 15.06 8.58 5.05 3.89 6.29 2.35 4.12 0.07 22 E2_Ab NovelBoundary 0 48.97 16.12 12.60 3.60 0.00 22.20 15.10 0.00 1.56 4.30 20.85 6.45 0.00 16.66 5.56 16.15 18.70 7.25 4.05 6.26 3.15 0.00 4.35 23 ER2a ExonRegion 0 25.40 2.16 3.06 2.47 3.51 3.09 2.98 0.22 0.77 1.43 14.62 3.52 0.29 11.37 11.42 14.12 16.50 1.15 0.60 0.00 4.41 3.00 2.94 24 ER2b ExonRegion 1 240.42 20.24 26.03 18.06 50.29 49.22 32.47 13.32 9.97 13.80 132.71 13.04 2.24 170.50 179.68 227.06 164.82 17.97 21.28 9.82 63.01 47.61 64.37 25 E2_Ac KnownBoundary 0 58.53 7.70 17.47 9.99 10.78 5.05 5.74 1.93 1.62 11.79 11.69 5.70 0.00 29.08 38.07 38.11 38.43 12.48 4.80 2.36 11.86 13.78 30.30 26 E2_Ad KnownBoundary 0 91.65 14.67 17.86 5.23 30.65 6.81 10.20 3.61 8.62 5.00 31.90 0.00 6.82 58.27 37.58 41.10 26.83 3.98 0.00 8.37 23.04 4.90 15.28 27 ER2c ExonRegion 1 137.57 21.86 35.84 18.06 33.45 16.50 20.19 16.85 9.88 15.77 71.52 8.66 14.07 119.78 137.81 100.31 81.70 17.55 6.37 14.36 34.71 18.23 48.45 28 ER2d ExonRegion 1 129.42 21.30 100.56 38.20 55.51 43.82 50.87 29.81 16.45 20.79 279.35 58.56 43.65 225.91 266.98 259.40 249.13 25.28 24.48 22.13 78.18 81.17 53.16 29 E2_Da KnownBoundary 1 187.22 36.18 137.78 63.33 86.93 66.04 82.05 35.41 20.72 47.38 354.41 81.18 99.67 372.95 501.89 522.17 351.29 27.11 16.85 32.28 114.60 134.59 99.53 30 ER2e ExonRegion 0 128.33 17.88 124.83 59.10 77.26 55.16 54.87 43.92 26.49 36.48 335.89 123.42 136.98 345.24 441.91 342.97 306.30 23.08 20.93 35.53 71.57 105.80 93.60 31 E2b_E5b KnownJunction 0 153.88 20.92 130.36 55.84 113.50 86.43 79.76 55.12 25.20 31.48 284.81 111.94 142.69 353.64 442.55 265.06 260.68 17.41 25.22 43.53 41.51 92.03 60.10 32 I2 Intron 0 5.31 0.73 4.19 1.75 3.83 1.05 3.89 2.40 0.92 1.84 4.98 5.07 5.82 5.55 6.86 13.20 22.70 3.69 1.83 3.66 3.00 0.60 3.37 33 I2_SR1 SilentIntronRegion 0 5.31 0.73 4.19 1.75 3.84 1.05 3.89 2.40 0.92 1.84 4.99 5.08 5.82 5.56 6.87 13.22 22.73 3.69 1.83 3.66 3.00 0.60 3.37 34 I2_SR2 SilentIntronRegion 0 1.85 0.93 2.07 2.94 4.04 0.00 2.87 0.42 1.39 1.33 5.77 19.43 9.45 6.27 5.33 15.85 20.78 2.23 0.83 1.59 2.50 1.57 3.33 35 ER3a ExonRegion 1 7.70 0.57 1.02 3.98 6.76 0.00 6.30 2.17 1.55 0.96 5.43 30.83 7.78 6.86 3.70 14.16 13.93 2.31 3.57 5.37 3.09 1.21 4.95 36 E3a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 I3_AR1 ActiveIntronRegion 0 16.16 3.39 5.29 1.68 8.71 1.04 9.19 1.25 2.46 2.00 9.05 17.64 20.26 3.17 4.56 21.97 23.37 2.21 1.16 4.28 3.36 1.46 4.29 38 I3_SR2 SilentIntronRegion 0 5.86 1.61 2.28 2.23 5.80 1.34 10.14 1.62 1.31 1.20 6.59 11.63 11.04 7.59 3.64 15.24 20.27 1.97 2.26 3.63 3.35 2.70 4.87 39 E4_Aa NovelBoundary 0 28.67 3.35 2.81 4.79 11.97 0.00 15.15 7.89 4.86 6.58 14.85 36.91 47.40 9.89 35.48 44.52 27.40 10.07 0.00 11.44 8.96 14.70 11.78 40 ER4a ExonRegion 0 6.80 0.00 0.21 0.02 23.88 1.17 8.44 1.64 2.30 2.12 11.07 4.55 7.86 7.09 3.19 16.72 12.87 2.79 4.06 1.36 1.40 0.00 3.74 41 E4_Da NovelBoundary 0 16.00 3.35 8.28 8.56 22.24 12.27 21.33 8.13 9.64 4.24 20.16 31.51 33.28 11.71 0.00 42.64 30.76 2.36 7.72 17.64 8.22 0.00 3.76 42 E4a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 I4 Intron 0 18.27 8.65 7.88 5.11 17.94 12.14 15.57 10.90 5.37 10.41 14.31 16.55 20.47 10.77 9.99 25.33 24.37 4.57 3.17 8.51 3.12 7.32 7.39 44 I4_AR1 ActiveIntronRegion 0 26.68 9.16 9.34 4.54 22.06 13.23 15.52 17.33 6.64 16.02 16.83 14.11 20.87 14.71 13.15 42.40 34.26 7.49 6.21 11.42 6.22 10.26 15.29 45 I4_SR2 SilentIntronRegion 1 37.08 11.80 17.42 11.02 26.92 15.71 18.95 13.26 5.28 18.48 28.53 16.31 39.56 14.78 19.93 36.50 40.64 8.25 5.00 9.27 4.29 10.39 13.27 46 I4_AR2 ActiveIntronRegion 0 17.73 10.80 3.66 0.00 11.11 14.79 15.35 3.50 2.33 6.71 6.26 19.74 26.56 6.24 13.18 21.73 8.37 1.18 6.24 5.21 0.90 6.32 2.40 47 E5_Aa NovelBoundary 0 28.23 3.22 6.68 5.03 15.87 5.22 15.28 13.68 12.93 25.65 24.16 12.15 49.35 9.36 15.33 28.28 23.19 1.99 3.67 8.31 2.84 11.76 4.35 48 ER5a ExonRegion 0 64.47 10.49 23.25 10.36 26.97 11.86 21.13 13.62 8.78 15.14 23.01 24.15 38.49 16.07 25.37 37.79 39.56 8.34 11.82 10.36 5.25 11.56 10.69 49 E5_Ab KnownBoundary 0 97.35 15.13 23.18 11.02 47.62 7.33 23.10 21.19 8.71 11.60 11.74 37.81 43.18 12.83 29.92 23.75 37.87 6.14 4.52 5.69 3.09 11.63 4.01 50 ER5b ExonRegion 0 217.70 31.56 192.53 74.22 181.15 155.51 121.49 80.65 34.48 63.97 387.43 195.26 213.96 316.93 483.41 329.61 369.30 19.81 56.76 55.49 64.92 193.39 75.35 51 E5_Da KnownBoundary 0 8.82 3.35 5.17 8.89 15.62 5.00 1.85 6.90 1.53 4.46 4.95 31.96 0.00 2.47 8.90 11.71 13.09 0.00 4.05 0.00 0.00 0.00 0.00 52 E5a_E6a KnownJunction 0 302.42 23.61 199.82 75.35 207.56 174.62 148.39 61.41 21.27 69.47 440.16 250.28 257.13 306.67 443.66 468.00 414.68 14.96 68.14 42.82 99.59 207.95 78.96 53 E5_Db KnownBoundary 0 0.00 0.00 3.90 8.89 8.57 2.84 9.05 7.64 6.08 5.00 7.37 5.70 7.30 2.12 0.00 3.33 19.82 0.00 0.00 3.26 0.00 3.12 0.00 54 E5b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 ER5c ExonRegion 0 20.11 9.66 15.62 12.27 16.72 7.79 12.91 10.37 7.41 7.45 30.93 34.64 11.73 8.53 21.76 20.06 40.44 1.39 13.54 9.57 0.00 9.90 7.34 56 ER5d ExonRegion 1 49.40 6.84 9.89 5.15 25.92 6.16 13.45 14.65 10.31 11.98 6.21 14.14 26.68 4.67 16.09 10.62 14.57 1.33 2.14 5.30 0.44 3.42 2.86 57 E5_Dc NovelBoundary 0 200.48 6.25 20.90 0.00 26.91 19.76 23.89 21.73 10.53 12.11 13.37 0.00 40.09 5.65 5.44 4.36 21.51 2.11 4.80 5.37 2.97 10.84 0.00 58 I5 Intron 0 74.73 6.84 10.75 2.28 30.74 6.68 25.23 17.32 7.74 11.02 15.17 17.41 22.34 2.52 20.90 6.66 11.10 1.54 3.57 5.37 0.62 2.34 0.82 59 I5_AR1 ActiveIntronRegion 0 75.54 6.90 10.86 2.30 31.08 6.75 25.50 17.52 7.82 11.14 15.33 17.61 22.59 2.54 21.13 6.74 11.22 1.56 3.61 5.43 0.62 2.36 0.83 60 E6_Aa NovelBoundary 0 87.50 12.30 17.27 7.66 19.69 2.90 19.74 35.32 15.22 11.12 34.01 24.76 23.21 3.00 8.90 23.50 20.38 0.00 9.22 9.27 2.84 9.25 0.00 61 ER6a ExonRegion 0 310.89 42.93 173.63 81.51 201.36 115.65 135.97 82.86 37.94 74.06 476.94 323.95 310.88 385.05 512.28 390.91 414.45 17.89 45.86 55.52 67.86 182.52 93.51 62 E6_Da KnownBoundary 0 596.70 84.13 192.75 92.50 220.80 92.39 131.43 118.99 45.98 72.88 509.97 385.18 324.17 547.36 721.18 453.98 386.54 28.52 14.97 75.93 49.92 218.17 112.85 63 ER6b ExonRegion 0 390.80 60.14 178.17 86.97 172.84 69.47 108.56 115.89 45.58 79.05 437.25 439.75 361.58 465.43 614.86 345.05 385.03 15.62 31.85 61.75 49.53 181.32 83.07 64 E6_Db KnownBoundary 1 65.72 27.82 53.90 21.48 62.05 4.94 44.56 35.82 18.58 23.13 32.01 6.30 19.64 9.01 77.51 23.58 43.48 4.27 28.42 11.76 0.00 2.63 4.35 65 E6b_E7a KnownJunction 0 278.05 19.60 128.26 62.76 146.26 65.02 86.21 73.36 28.39 57.75 351.62 444.14 378.71 424.34 621.55 223.36 316.50 11.94 4.80 50.30 56.96 149.65 59.41 66 ER6c ExonRegion 1 230.52 21.86 67.28 25.55 83.94 24.07 43.95 34.86 14.06 16.97 28.80 27.61 57.21 12.74 59.37 39.09 31.74 3.24 10.50 10.71 2.02 12.02 5.04 67 E6_Dc NovelBoundary 0 135.28 18.09 4.97 1.83 14.43 0.00 3.67 3.82 0.00 0.00 7.16 0.00 6.82 0.00 6.30 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68 ER6d ExonRegion 0 16.93 4.07 5.55 0.00 5.82 0.11 2.65 2.64 0.29 1.08 3.30 1.02 5.52 0.57 4.44 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.69 69 I6 Intron 0 104.04 28.52 40.81 22.36 65.23 21.00 33.65 28.93 15.12 19.48 18.85 49.44 56.96 13.68 39.52 25.40 29.11 4.28 8.72 9.67 1.09 7.19 7.56 70 I6_AR1 ActiveIntronRegion 0 142.43 36.68 49.74 25.87 80.60 22.58 37.71 30.91 14.49 19.67 21.51 46.19 61.00 14.13 48.69 30.57 34.68 5.85 10.92 8.82 1.53 7.93 8.24 71 I6_SR1 SilentIntronRegion 0 38.93 14.69 25.72 16.45 39.23 18.35 26.84 25.64 16.25 19.20 14.36 55.13 50.23 12.94 24.01 16.65 19.70 1.64 5.02 11.16 0.34 5.95 6.43 72 E7_Aa NovelBoundary 1 48.30 16.18 44.59 33.66 23.51 23.57 20.31 22.84 17.82 26.35 11.74 57.02 42.04 18.36 19.53 29.99 21.69 0.00 8.47 5.56 0.00 5.76 11.61 73 ER7a ExonRegion 0 306.52 57.68 124.59 83.80 178.45 84.67 105.20 64.08 44.67 65.31 416.41 523.54 446.26 384.46 547.90 242.07 332.31 9.74 24.88 47.38 39.87 211.77 68.41 74 E7_Da KnownBoundary 0 265.90 82.22 173.50 99.15 249.07 75.47 149.71 80.75 49.22 73.76 435.79 797.81 437.15 389.25 628.22 261.30 303.51 10.07 17.98 50.88 30.21 225.58 67.86 75 ER7b ExonRegion 0 161.87 63.03 126.31 83.90 179.89 61.58 101.20 79.52 37.32 56.02 264.45 552.18 386.07 210.60 376.69 139.21 202.69 3.55 17.90 31.57 15.85 203.44 36.68