Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CLIP2 Gene 0 32.11 75.78 189.89 82.79 68.95 255.18 46.39 154.98 167.47 125.12 151.25 18.69 57.38 125.45 92.23 84.30 225.56 191.83 130.05 99.35 169.86 167.20 233.92 2 361545 Transcript 0 40.97 9.54 113.12 41.89 37.27 72.17 25.70 33.97 27.81 62.62 200.26 18.91 51.94 133.09 123.62 74.51 280.22 140.78 216.01 43.40 226.97 192.58 337.70 3 223398 Transcript 0 31.10 16.74 7.82 6.50 44.87 45.00 8.15 4.52 7.98 4.68 11.89 1.00 6.85 11.87 19.42 9.14 22.34 8.24 14.95 7.04 18.14 7.37 12.65 4 395060 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 487091 Transcript 0 1.82 7.40 9.18 8.28 7.05 11.23 7.28 10.65 8.99 6.98 7.61 1.02 3.32 2.70 7.66 5.69 25.48 13.20 8.16 11.95 7.89 7.76 21.58 6 493166 Transcript 0 0.01 3.58 6.81 2.43 6.16 13.19 3.30 1.64 6.12 3.37 1.14 0.00 2.15 3.77 1.22 3.20 5.30 2.60 1.18 3.34 2.01 2.84 7.64 7 482424 Transcript 0 7.88 14.62 14.88 12.08 34.68 25.72 21.57 17.68 15.97 11.12 7.26 5.06 6.65 5.25 5.64 9.11 24.30 18.98 10.31 12.39 7.46 11.92 33.89 8 491075 Transcript 0 4.16 5.09 17.21 7.49 9.72 18.65 5.44 18.65 13.94 12.98 4.98 0.09 1.01 4.33 4.70 10.43 12.91 21.96 10.73 9.04 10.99 8.08 25.25 9 474962 Transcript 0 7.52 12.87 10.13 5.04 14.33 13.39 12.16 14.83 11.05 8.08 3.10 6.63 11.40 7.77 13.91 8.95 15.90 14.63 5.64 14.14 8.25 10.33 35.02 10 487447 Transcript 0 0.00 0.00 16.08 1.80 0.00 0.00 1.99 2.05 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.30 4.15 0.00 0.00 0.00 2.27 3.33 11 ER1a ExonRegion 0 1.99 3.87 24.14 5.39 3.99 26.77 3.86 17.47 21.47 20.40 35.33 2.63 7.25 34.34 12.30 14.81 60.14 38.84 31.71 20.86 49.76 23.44 37.88 12 E1a_E2a KnownJunction 1 3.11 15.26 82.49 28.97 44.99 279.84 28.35 84.65 93.58 63.21 70.33 6.00 25.97 93.06 18.79 36.40 128.28 149.69 136.85 85.46 117.19 75.87 151.86 13 I1_AR1 ActiveIntronRegion 0 6.48 7.76 6.10 2.88 5.97 7.36 7.27 6.43 6.57 4.67 3.04 4.44 3.60 1.76 8.49 6.63 21.70 16.79 6.49 22.94 8.52 4.27 39.68 14 I1_AR2 ActiveIntronRegion 0 5.40 9.18 14.41 4.03 6.25 2.35 5.20 8.03 10.10 7.50 2.30 0.71 7.01 2.05 10.89 8.86 22.93 14.09 7.67 21.83 5.41 4.48 57.09 15 ER2a ExonRegion 0 1.93 18.27 102.90 25.35 24.99 146.62 18.71 100.56 93.51 77.21 96.53 17.64 14.55 78.08 60.29 40.82 167.91 127.79 120.39 66.83 108.76 106.90 112.46 16 E2_Ab KnownBoundary 1 0.00 14.34 151.62 30.57 23.77 131.52 22.04 117.51 97.05 94.47 93.39 13.20 23.86 63.28 38.69 15.81 149.88 111.43 68.14 63.34 129.36 35.82 74.35 17 ER2b ExonRegion 1 6.01 18.56 105.40 29.89 11.37 64.52 12.37 77.95 98.46 88.76 83.84 3.25 18.10 105.49 46.88 29.45 194.73 84.33 92.53 75.02 129.80 66.66 112.72 18 E2a_E3a KnownJunction 1 10.37 46.64 117.62 44.55 12.05 28.22 15.06 108.85 124.77 102.24 91.08 6.30 6.82 146.10 44.63 59.13 265.54 150.27 166.78 94.15 148.57 115.43 214.94 19 ER3a ExonRegion 0 7.21 24.33 107.73 35.53 25.55 123.09 20.80 88.87 110.68 104.29 121.43 8.53 27.46 121.15 64.06 60.86 207.30 194.55 104.41 77.23 147.33 98.10 208.44 20 E3a_E4a KnownJunction 0 14.08 51.31 163.92 64.46 48.05 162.80 28.79 164.26 176.30 136.89 125.93 6.30 31.65 153.51 107.18 91.69 273.77 257.38 169.79 128.54 179.77 161.04 377.39 21 ER4a ExonRegion 0 13.75 25.79 143.29 54.71 25.41 143.32 22.21 136.11 173.77 123.67 167.31 13.13 46.49 143.49 86.36 80.84 240.41 265.10 170.33 112.54 170.21 150.28 278.89 22 E4a_E5a KnownJunction 0 13.34 13.42 119.98 53.64 41.85 112.61 23.10 141.71 148.58 114.65 95.50 11.70 39.77 101.83 67.87 41.95 211.41 188.20 88.47 93.57 118.92 115.12 176.96 23 ER5a ExonRegion 0 21.26 46.66 167.40 59.81 67.83 256.44 45.81 139.11 194.55 136.48 206.16 26.52 62.77 162.62 128.40 105.26 330.06 284.48 179.99 130.66 228.60 176.72 295.23 24 E5a_E6a KnownJunction 0 27.86 51.11 196.53 73.15 52.12 241.62 58.29 132.42 203.96 163.56 202.47 32.41 60.55 187.42 125.97 61.01 270.97 308.21 164.52 156.72 244.27 215.42 335.82 25 I5 Intron 0 4.94 6.32 15.48 7.58 11.03 9.98 9.16 13.42 15.31 6.91 2.55 1.64 4.27 6.76 7.02 18.25 26.70 20.64 13.37 9.10 12.85 14.09 52.97 26 I5_SR1 SilentIntronRegion 0 4.95 6.34 15.53 7.60 11.06 10.01 9.19 13.46 15.36 6.93 2.56 1.65 4.28 6.78 7.04 18.31 26.78 20.70 13.41 9.13 12.89 14.14 53.13 27 ER6a ExonRegion 0 19.75 45.35 189.96 62.69 67.10 270.16 43.28 136.37 176.48 144.71 222.84 24.64 57.01 172.35 136.42 101.68 330.46 264.72 155.91 155.24 259.90 160.46 304.19 28 E6a_E7a KnownJunction 0 29.49 86.17 293.75 105.25 129.54 665.24 99.37 180.89 254.08 218.79 259.59 18.76 53.57 177.29 168.61 141.84 443.29 341.12 260.81 216.30 275.90 232.99 363.31 29 ER7a ExonRegion 0 28.96 61.44 217.53 77.12 77.13 356.87 57.02 162.99 205.82 151.31 248.30 21.27 75.54 198.58 144.87 105.17 369.35 305.11 215.69 162.01 255.86 213.32 376.79 30 E7a_E8a KnownJunction 0 25.63 43.48 194.08 74.62 72.07 255.82 58.56 177.85 204.05 147.96 220.53 18.91 73.05 164.22 165.28 82.97 300.98 329.97 168.76 197.06 228.64 193.74 353.06 31 E8_Aa NovelBoundary 0 3.04 9.41 10.70 26.44 4.16 7.95 13.65 12.49 22.40 13.48 11.85 5.70 0.00 2.18 11.13 8.46 23.28 30.88 9.60 5.31 11.86 14.63 40.12 32 ER8a ExonRegion 0 31.75 58.24 197.57 62.45 60.27 241.25 47.53 133.43 208.43 150.66 252.01 17.46 97.57 164.44 122.52 98.62 309.63 358.98 220.42 171.68 268.35 196.88 369.82 33 E8a_E9a KnownJunction 0 8.45 58.87 103.19 37.39 23.26 215.67 18.02 101.62 182.87 96.92 30.06 0.00 0.00 16.30 22.25 23.75 35.06 216.10 112.10 93.51 24.59 14.51 21.00 34 E8a_E10a KnownJunction 0 40.97 9.54 113.12 41.89 37.27 72.17 25.70 33.97 27.81 62.62 200.26 18.91 51.94 133.09 123.62 74.51 280.22 140.78 216.01 43.40 226.97 192.58 337.70 35 ER9a ExonRegion 0 8.04 50.43 86.87 33.99 26.38 209.80 18.46 110.84 161.39 83.70 41.66 2.72 20.46 17.71 25.09 9.79 50.87 123.50 55.85 84.88 28.63 14.25 19.33 36 E9a_E10a KnownJunction 1 7.04 30.46 51.95 30.03 37.18 235.32 26.06 102.44 143.86 90.69 45.33 6.30 0.00 4.59 29.42 8.29 46.00 115.70 25.69 84.18 23.23 7.35 8.28 37 ER10a ExonRegion 1 23.62 61.98 163.89 61.77 57.96 254.70 44.02 122.32 161.90 126.48 189.95 6.80 88.07 154.05 116.44 92.36 256.64 270.75 181.67 118.05 232.14 170.19 305.47 38 E10_Ab KnownBoundary 1 27.86 90.38 124.95 65.06 79.12 294.26 70.66 110.16 153.79 116.18 129.09 6.30 87.98 150.04 110.64 83.40 215.24 207.27 174.97 131.61 200.41 146.78 293.99 39 ER10b ExonRegion 0 21.90 62.45 191.80 77.60 67.59 280.21 50.77 158.63 185.91 147.12 171.14 10.72 59.93 154.47 110.51 97.96 265.00 233.19 153.83 128.25 196.41 175.76 288.54 40 E10_Ac KnownBoundary 0 29.34 68.08 228.55 100.65 72.33 467.51 89.08 244.31 258.53 165.28 199.42 17.86 81.00 206.02 160.95 76.05 290.70 226.50 196.24 142.92 305.86 166.37 369.88 41 ER10c ExonRegion 0 19.62 60.86 235.98 86.27 38.43 314.03 64.12 208.33 222.59 168.40 205.79 24.14 105.65 184.98 112.30 88.11 337.13 197.64 135.19 125.11 259.29 179.35 268.32 42 E10a_E11b KnownJunction 0 45.71 131.16 299.93 112.41 98.81 472.23 78.92 248.54 277.37 170.63 286.13 42.46 213.78 253.52 115.83 129.71 341.19 217.05 265.70 170.34 293.69 173.29 386.61 43 I10 Intron 0 5.83 17.16 17.06 10.52 13.58 19.36 14.15 14.90 12.68 10.69 8.71 2.02 2.94 4.97 7.77 12.89 18.31 26.86 13.17 10.59 8.59 11.14 44.03 44 I10_SR1 SilentIntronRegion 0 5.84 17.18 17.09 10.53 13.60 19.39 14.17 14.92 12.70 10.70 8.72 2.02 2.94 4.98 7.78 12.91 18.33 26.89 13.19 10.60 8.60 11.15 44.09 45 E11_Aa NovelBoundary 1 7.56 28.28 21.23 35.39 52.12 50.54 38.55 14.13 21.56 13.43 2.42 0.00 26.95 6.83 5.19 15.81 17.20 28.73 22.49 13.93 2.90 8.08 27.32 46 ER11a ExonRegion 0 7.88 14.62 14.88 12.08 34.68 25.72 21.57 17.68 15.97 11.12 7.26 5.06 6.65 5.25 5.64 9.11 24.30 18.98 10.31 12.39 7.46 11.92 33.89 47 E11_Ab KnownBoundary 0 16.67 21.05 15.73 9.06 72.33 56.22 45.84 9.41 8.16 5.29 4.32 0.00 6.66 15.01 6.18 10.60 23.00 34.16 11.39 17.58 9.45 11.63 48.32 48 ER11b ExonRegion 0 41.59 109.99 297.74 130.12 128.44 437.22 71.28 251.99 273.61 199.78 231.68 31.22 124.08 253.68 158.86 123.94 375.90 277.03 247.23 165.92 299.63 247.65 417.47 49 E11_Da KnownBoundary 0 0.00 5.92 2.84 16.78 7.98 16.58 10.38 11.91 19.07 5.16 5.37 0.00 0.00 4.59 14.09 3.93 24.03 25.54 0.00 17.19 9.45 8.88 43.02 50 E11a_E12a KnownJunction 0 0.00 0.00 4.52 1.86 0.00 2.16 0.00 0.00 3.36 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.49 51 E11a_E13b KnownJunction 0 30.30 83.27 318.32 120.60 141.68 454.28 57.23 283.08 282.55 220.78 232.01 49.22 98.21 218.73 185.43 127.15 421.13 259.33 203.02 136.21 246.12 239.91 374.32 52 ER11c ExonRegion 0 1.82 7.40 9.18 8.28 7.05 11.23 7.28 10.65 8.99 6.98 7.61 1.02 3.32 2.70 7.66 5.69 25.48 13.20 8.16 11.95 7.89 7.76 21.58 53 E12_Aa NovelBoundary 1 17.11 52.82 34.21 37.52 51.95 14.20 32.24 31.05 29.02 15.53 4.42 0.00 40.74 2.47 0.00 12.05 24.96 17.04 17.32 14.19 8.71 21.98 34.06 54 ER12a ExonRegion 0 0.04 8.05 4.28 0.81 12.83 16.54 9.19 0.00 3.50 2.50 2.09 0.00 8.61 5.50 0.41 0.00 3.44 0.04 0.00 2.48 0.00 0.04 8.27 55 E12_Da NovelBoundary 0 16.89 34.47 36.34 42.45 133.70 57.24 75.69 23.86 32.78 17.35 9.63 12.30 26.95 10.12 26.95 6.58 29.64 18.24 8.56 20.96 6.24 22.29 55.32 56 E12a_E13b KnownJunction 0 0.00 0.00 5.56 0.00 3.14 15.90 0.00 0.00 1.48 3.04 0.00 0.00 0.00 0.00 0.00 0.00 4.68 0.00 0.00 2.68 0.00 0.00 0.00 57 E13_Aa NovelBoundary 0 7.04 23.15 19.19 11.22 29.20 32.25 4.50 38.28 17.65 11.87 2.63 0.00 6.82 4.59 0.00 17.69 15.15 32.58 21.84 12.08 11.61 29.02 81.52 58 ER13a ExonRegion 0 4.59 5.53 21.14 7.95 7.93 20.25 6.92 21.79 16.92 18.02 5.49 0.19 0.88 5.17 4.92 7.37 13.25 17.92 12.07 8.99 15.17 9.21 22.88 59 E13_Ab KnownBoundary 0 6.22 15.92 35.87 10.82 12.39 35.38 16.91 39.76 25.98 18.08 5.37 0.00 0.00 9.48 4.45 12.30 20.57 18.49 22.59 8.63 11.00 2.94 28.60 60 ER13b ExonRegion 0 38.68 93.81 305.68 120.33 105.27 438.52 62.30 267.39 316.90 211.18 280.19 44.15 151.81 192.46 140.21 130.81 361.62 296.37 225.91 162.43 289.38 264.14 393.66 61 E13_Da NovelBoundary 0 8.45 30.59 157.92 56.37 25.47 143.72 16.61 101.41 136.63 91.60 55.38 28.36 36.69 52.80 26.58 28.88 96.12 134.23 54.40 31.38 83.58 71.58 110.97 62 E13a_E14b KnownJunction 0 0.00 6.25 12.89 7.06 8.66 18.17 4.02 6.57 16.15 6.26 2.47 0.00 0.00 9.59 4.45 12.82 13.09 10.36 4.71 8.18 8.03 11.33 15.79 63 E13b_E14b KnownJunction 0 20.74 106.76 364.24 138.51 90.15 571.55 80.29 242.50 325.14 190.59 254.91 56.72 120.12 224.62 145.25 152.87 335.20 363.34 177.70 139.15 266.57 215.17 274.78 64 ER13c ExonRegion 1 26.00 79.31 312.64 125.19 82.57 475.74 65.82 210.13 303.66 181.87 242.99 68.03 123.28 221.34 121.44 122.71 309.81 336.82 185.66 132.22 271.06 214.60 300.80 65 E14_Aa NovelBoundary 0 1139.31 1364.16 830.01 882.77 1071.82 978.19 1721.24 948.89 801.90 837.64 614.21 612.05 613.60 424.75 714.01 1296.24 1220.57 1041.31 897.72 1609.50 1109.64 591.52 1189.79 66 ER14a ExonRegion 0 7.52 12.87 10.13 5.04 14.33 13.39 12.16 14.83 11.05 8.08 3.10 6.63 11.40 7.77 13.91 8.95 15.90 14.63 5.64 14.14 8.25 10.33 35.02 67 E14_Ab KnownBoundary 0 0.00 6.71 4.41 2.86 32.00 32.08 7.55 13.72 10.79 6.47 2.16 0.00 0.00 4.94 4.45 3.93 8.23 11.61 0.00 6.14 3.15 5.69 27.49 68 ER14b ExonRegion 0 28.62 69.41 324.80 130.30 95.80 462.60 70.57 237.06 304.03 206.57 268.76 41.69 100.22 220.60 142.92 108.93 315.16 352.00 155.25 164.48 258.65 211.75 310.39 69 E14_Da KnownBoundary 0 54.60 88.60 362.79 171.27 96.60 435.89 67.30 257.16 300.95 239.96 261.59 24.31 121.42 212.20 160.08 96.64 284.90 330.88 173.56 183.76 243.84 224.85 302.61 70 ER14c ExonRegion 0 35.92 81.42 290.59 126.55 68.06 351.12 59.04 238.83 276.28 213.02 212.30 26.41 93.63 190.01 142.21 126.32 321.27 311.51 196.13 173.60 221.91 253.15 335.52 71 E14_Db KnownBoundary 0 0.00 7.96 14.43 16.18 4.33 13.40 1.72 36.68 10.71 4.27 2.11 0.00 0.00 4.83 0.00 4.36 0.00 4.97 0.00 8.18 3.15 5.82 0.00 72 E14b_E15a KnownJunction 1 36.82 93.21 338.01 136.51 104.92 366.10 64.70 320.67 287.90 231.20 249.54 60.92 74.18 188.42 147.85 155.00 287.42 360.35 279.82 187.02 224.38 357.11 375.09 73 ER14d ExonRegion 0 3.74 4.65 13.29 7.04 11.51 17.04 3.96 15.52 10.96 7.94 4.47 0.00 1.14 3.50 4.48 13.49 12.57 26.01 9.39 9.09 6.81 6.95 27.62 74 I14 Intron 0 9.04 17.69 16.03 16.05 22.49 23.63 13.31 25.55 15.23 12.92 5.64 3.59 9.08 4.28 6.54 14.27 21.54 22.99 14.61 11.57 10.40 17.13 47.12 75 I14_SR1 SilentIntronRegion 0 9.05 17.70 16.05 16.07 22.52 23.66 13.32 25.57 15.25 12.93 5.64 3.59 9.09 4.28 6.55 14.28 21.56 23.02 14.63 11.58 10.42 17.15 47.17 76 ER15a ExonRegion 0 41.43 107.32 299.54 124.50 99.47 392.31 51.97 237.94 267.97 180.44 272.94 38.35 103.33 202.84 158.31 120.69 336.19 289.74 190.53 172.89 246.86 280.71 310.93 77 E15_Da KnownBoundary 0 32.15 110.64 192.90 60.33 84.13 274.22 35.33 139.73 144.18 90.36 156.41 17.71 49.19 121.08 53.03 64.09 231.23 185.88 47.72 75.36 118.18 172.00 170.98 78 E15_Db KnownBoundary 0 40.45 116.95 138.76 75.12 95.08 283.25 54.28 139.45 146.53 94.31 133.67 20.11 32.95 61.22 76.52 78.78 219.26 109.15 67.95 63.15 157.47 161.11 168.25 79 ER15b ExonRegion 0 61.91 148.71 254.57 106.13 126.09 444.70 65.87 216.70 231.58 154.26 233.88 40.05 83.83 218.04 172.26 130.03 356.08 224.04 97.95 123.67 237.73 251.06 241.91 80 ER15c ExonRegion 0 76.48 151.74 281.00 127.75 138.47 547.45 80.03 252.99 299.06 197.40 253.56 36.80 95.91 212.33 166.87 172.48 376.74 273.22 177.05 152.02 292.29 279.75 317.74 81 E15c_E16a KnownJunction 0 94.24 217.33 353.30 147.80 170.63 542.30 86.78 285.14 376.44 246.24 266.54 32.56 89.28 197.19 168.12 184.57 441.51 353.22 251.49 179.61 335.33 301.33 366.12 82 ER16a ExonRegion 0 40.33 145.54 293.35 117.43 91.59 447.61 90.94 229.87 263.98 188.77 197.89 48.39 113.68 189.84 157.05 117.73 344.93 236.56 173.33 168.80 275.76 285.13 319.29 83 E16_Ab KnownBoundary 1 41.12 134.25 437.63 244.39 160.10 690.00 105.15 312.49 335.59 228.17 188.84 51.92 134.57 294.72 244.52 158.85 317.53 280.35 150.31 183.06 335.20 381.30 377.99 84 ER16b ExonRegion 0 28.15 86.19 399.34 190.71 109.41 447.45 59.14 364.11 349.49 224.38 247.23 39.85 117.12 203.97 193.75 155.12 382.63 384.46 187.11 175.84 310.99 333.51 344.03 85 E16a_E17a KnownJunction 0 27.26 86.43 400.96 212.46 62.05 381.77 54.67 417.60 384.23 216.02 212.21 30.61 144.96 220.56 218.80 219.09 395.79 483.80 292.34 205.94 244.08 524.10 512.43 86 E16a_E18a KnownJunction 0 0.00 0.00 16.08 1.80 0.00 0.00 1.99 2.05 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.30 4.15 0.00 0.00 0.00 2.27 3.33 87 ER17a ExonRegion 0 30.94 104.97 475.42 235.20 101.59 401.25 80.34 472.20 415.68 268.69 307.39 43.36 141.59 250.09 196.46 180.50 421.83 457.54 315.91 223.54 310.69 544.10 514.98 88 E17a_E18a KnownJunction 0 20.37 138.07 657.25 330.19 153.65 464.16 92.12 676.45 521.35 371.18 469.86 55.22 210.21 191.36 172.94 150.22 602.15 415.57 255.16 181.46 475.38 398.94 408.29 89 ER18a ExonRegion 0 43.21 165.57 563.06 273.83 169.46 506.59 97.97 566.79 439.49 321.71 472.92 53.40 209.49 191.51 165.85 160.00 581.51 407.27 264.92 201.24 488.49 422.43 460.56 90 ER18b ExonRegion 0 35.10 92.63 233.94 103.29 91.79 355.19 65.13 227.95 210.71 173.42 185.39 33.44 117.33 164.38 115.90 87.80 287.43 184.55 159.87 110.49 234.90 247.80 253.60 91 E18_Db KnownBoundary 1 87.20 208.06 214.19 125.92 121.90 555.13 63.99 181.67 181.74 168.53 131.98 30.91 66.88 125.55 143.03 119.46 273.40 261.82 235.77 88.97 206.15 296.13 334.71 92 ER18c ExonRegion 0 84.82 185.99 385.38 182.86 141.51 497.48 85.67 290.96 295.78 213.27 256.73 32.19 84.19 198.23 153.95 160.69 355.10 304.82 217.01 149.84 270.04 317.34 399.16 93 ER18d ExonRegion 0 31.10 16.74 7.82 6.50 44.87 45.00 8.15 4.52 7.98 4.68 11.89 1.00 6.85 11.87 19.42 9.14 22.34 8.24 14.95 7.04 18.14 7.37 12.65