Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 BET1 Gene 0 49.76 45.68 22.43 30.09 49.65 29.69 26.24 18.60 16.28 19.39 25.71 64.82 53.90 23.80 35.50 23.79 24.00 4.23 11.94 11.35 18.24 79.53 30.53 2 425626 Transcript 0 1.38 1.11 0.59 1.51 4.94 0.40 5.13 1.12 1.15 0.56 1.26 4.03 1.49 0.87 0.99 0.65 0.72 0.30 0.35 0.70 0.78 2.73 0.64 3 416359 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 222547 Transcript 0 12.46 4.29 2.86 4.16 20.51 8.05 6.47 1.25 3.84 9.24 0.00 18.76 17.20 1.53 6.45 4.13 0.00 0.00 2.12 2.01 0.00 12.39 0.00 5 433727 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 357520 Transcript 0 15.53 2.96 1.59 7.96 11.56 7.46 4.07 2.85 3.56 3.01 3.82 7.03 8.67 2.36 5.41 1.81 2.42 0.30 1.33 2.34 1.15 4.81 3.22 7 457139 Transcript 0 0.00 0.00 0.00 0.00 3.30 0.00 0.00 0.00 0.00 0.00 0.87 1.47 4.92 2.07 0.84 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 471446 Transcript 0 4.56 1.95 0.00 0.93 12.10 10.37 6.44 0.00 1.29 1.86 11.80 15.35 20.04 9.12 2.02 2.39 2.63 1.63 0.85 5.50 1.94 7.96 2.52 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.54 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 3.57 0.00 2.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 1.39 0.00 11 ER1c ExonRegion 0 15.72 6.54 0.53 1.17 18.54 21.22 15.23 0.37 0.00 0.08 7.59 0.00 0.00 1.86 6.42 10.40 7.07 3.70 4.55 2.43 7.56 7.44 4.40 12 ER1d ExonRegion 0 35.28 21.69 1.23 5.22 41.47 59.29 37.73 4.90 0.00 3.06 15.46 0.00 0.00 9.74 22.24 29.23 16.50 10.78 17.52 6.38 19.10 14.24 11.75 13 ER1e ExonRegion 1 108.94 70.36 22.99 27.51 91.96 119.82 70.47 20.61 21.62 23.08 61.78 6.26 15.77 88.47 85.37 108.19 96.92 27.45 54.52 26.44 145.19 120.35 147.94 14 E1a_E3a KnownJunction 1 45.79 62.49 20.43 16.48 10.70 8.18 23.10 20.17 16.72 19.29 162.36 23.71 46.10 31.61 95.19 39.56 234.50 7.09 15.44 25.95 316.18 45.80 20.15 15 Ix_AR2 ActiveIntronRegion 0 2.94 0.14 3.88 1.73 2.97 2.00 6.91 1.29 3.06 0.15 3.39 14.24 21.26 0.58 1.45 0.00 1.87 0.86 1.77 4.56 0.59 14.28 0.16 16 Ix_AR1 ActiveIntronRegion 0 1.19 1.68 1.10 1.00 2.09 4.22 3.80 1.25 1.72 1.18 3.48 17.97 9.26 2.02 2.43 2.11 2.91 0.75 0.94 1.76 1.18 6.26 1.25 17 E2_Aa NovelBoundary 0 3.04 3.03 9.79 3.03 12.31 2.90 2.03 0.00 1.68 2.58 10.21 12.60 0.00 4.71 0.00 11.36 8.98 1.66 8.28 6.52 0.00 11.63 0.00 18 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 6.60 0.00 0.00 0.00 0.00 0.00 1.75 2.93 9.83 4.14 1.68 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E2_Da NovelBoundary 0 3.19 2.63 1.80 0.00 14.01 0.00 4.50 9.61 0.00 0.00 5.05 7.35 27.27 5.24 8.90 11.62 0.00 0.00 0.00 3.20 2.90 5.45 0.00 20 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER3a ExonRegion 0 19.01 55.33 46.80 48.52 51.59 34.71 33.30 47.29 38.92 39.74 124.99 59.82 71.55 137.30 146.59 181.99 135.86 40.92 100.63 38.28 159.94 268.29 231.64 22 E3a_E4a KnownJunction 0 25.34 82.49 72.74 50.04 269.78 256.67 102.94 57.09 45.92 54.45 95.55 152.00 181.97 68.57 130.79 145.86 91.91 39.42 47.25 29.98 82.35 321.60 240.98 23 E4_Aa NovelBoundary 0 0.00 6.64 3.67 3.40 3.65 8.52 20.09 4.44 1.79 1.58 0.00 33.76 0.00 4.83 0.00 3.59 0.00 1.91 0.00 2.56 0.00 5.57 3.93 24 ER4a ExonRegion 0 37.54 89.48 71.16 68.17 257.86 220.92 132.44 52.31 59.18 50.30 128.18 210.32 159.95 72.34 134.68 99.85 133.08 24.38 20.12 37.70 74.08 282.41 106.08 25 E4_Da KnownBoundary 0 0.00 0.00 0.00 1.50 0.00 0.00 13.03 1.73 3.91 0.00 0.00 0.00 6.82 2.47 0.00 0.00 0.00 0.00 0.00 0.00 2.66 2.39 0.00 26 E4a_E5a KnownJunction 0 56.01 103.99 68.83 91.36 258.83 223.11 184.64 62.60 55.82 41.66 100.34 228.82 202.42 69.05 155.51 95.96 126.13 3.15 16.38 24.80 42.38 306.17 58.73 27 E4a_E6a KnownJunction 0 0.00 3.35 0.00 0.00 6.45 11.19 8.26 0.00 0.00 1.67 12.16 6.00 21.43 5.47 0.00 0.00 0.00 2.53 0.00 3.07 0.00 2.88 0.00 28 ER4b ExonRegion 0 2.77 2.22 1.17 3.01 9.34 0.80 8.95 2.25 2.30 1.12 2.53 8.07 2.99 1.74 1.97 1.30 1.44 0.60 0.69 1.39 1.55 5.47 1.28 29 E5_Aa NovelBoundary 0 0.00 2.83 0.00 5.36 0.00 2.90 4.06 5.05 0.00 1.67 0.00 23.86 0.00 0.00 4.45 0.00 0.00 2.11 14.40 0.00 0.00 9.37 0.00 30 ER5a ExonRegion 0 90.64 149.41 85.78 78.73 179.90 155.66 141.27 61.72 60.56 56.94 127.06 214.56 179.88 75.19 109.31 89.43 119.32 1.41 29.98 25.59 45.50 337.16 77.39 31 E5_Da KnownBoundary 0 171.22 243.71 107.27 85.60 129.80 109.88 109.48 52.99 58.01 75.91 131.56 194.16 201.12 73.52 124.48 83.23 95.75 0.00 44.99 25.12 43.68 375.73 105.08 32 E5a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.84 0.00 0.00 5.24 0.00 4.53 6.30 0.00 2.30 0.00 0.00 4.02 0.00 9.32 0.00 2.59 3.12 3.84 34 ER5b ExonRegion 0 179.92 296.32 82.54 86.43 104.39 57.18 66.70 58.78 46.92 67.71 73.94 292.34 182.72 64.14 97.90 62.76 76.73 6.96 22.66 30.60 40.65 285.64 70.53 35 E5_Ab KnownBoundary 0 131.13 177.80 112.33 91.03 210.10 79.16 105.33 82.52 60.07 61.14 108.76 267.54 183.75 82.64 80.23 81.69 77.33 8.33 46.21 10.42 68.02 312.23 115.84 36 ER5c ExonRegion 0 93.94 93.72 85.04 83.36 147.88 63.11 79.81 61.12 42.28 71.03 54.92 198.73 171.44 59.87 100.31 53.82 46.45 8.06 30.90 24.59 29.50 268.40 69.82 37 E5_Db NovelBoundary 1 49.49 21.71 21.02 24.47 70.54 36.63 29.32 18.07 15.22 39.03 0.00 63.77 46.91 4.83 23.73 8.63 0.00 0.00 9.13 12.21 0.00 72.13 0.00 38 E5_Dd NovelBoundary 0 0.00 22.30 4.11 5.93 12.14 5.17 4.50 1.85 3.50 2.79 2.68 0.00 13.64 2.35 0.00 0.00 0.00 2.57 0.00 3.26 2.53 3.12 0.00 39 ER5d ExonRegion 1 25.07 13.61 11.12 14.99 39.93 19.75 17.62 10.37 9.88 22.32 0.00 43.29 44.74 5.12 16.96 5.94 0.00 0.00 6.86 4.26 0.00 43.75 0.00 40 ER5e ExonRegion 0 12.46 4.29 2.86 4.16 20.51 8.05 6.47 1.25 3.84 9.24 0.00 18.76 17.20 1.53 6.45 4.13 0.00 0.00 2.12 2.01 0.00 12.39 0.00 41 Ix Intron 0 7.54 18.59 7.05 14.83 15.41 13.61 9.51 5.66 5.79 6.29 1.95 12.79 7.25 2.29 1.11 1.94 1.37 1.31 2.08 3.66 1.57 12.74 4.88 42 Ix_AR1 ActiveIntronRegion 0 9.19 22.07 8.11 16.83 15.05 12.66 8.88 5.59 3.81 6.57 1.91 13.44 4.17 2.75 1.85 0.59 0.65 1.72 1.89 4.41 1.09 11.72 4.92 43 Ix_AR1 ActiveIntronRegion 0 10.69 16.56 7.08 11.03 19.20 14.94 7.19 11.98 3.93 8.62 2.62 5.53 3.05 1.57 2.55 1.73 1.95 2.32 6.79 2.89 1.28 14.54 3.99 44 ER6a ExonRegion 0 2.17 2.85 0.00 2.74 5.23 4.66 3.42 2.71 6.29 3.15 13.04 15.60 25.43 7.14 3.31 3.87 8.77 2.52 0.98 9.71 6.30 12.46 8.73 45 E6_Da KnownBoundary 0 0.00 3.35 1.18 3.30 0.00 2.90 2.03 0.00 6.66 6.18 19.85 30.61 48.37 14.30 8.90 12.13 4.77 3.90 0.00 0.00 0.00 14.39 14.08 46 ER6b ExonRegion 0 3.88 6.14 0.00 2.02 1.28 0.76 2.32 0.00 4.25 3.08 12.32 21.56 19.05 9.20 7.01 4.15 3.71 5.81 5.04 3.24 6.57 14.98 5.69 47 E6b_E7a KnownJunction 0 10.15 5.85 0.00 1.50 8.23 0.00 0.00 0.00 4.05 1.56 4.58 18.46 21.91 9.95 0.00 0.00 4.77 5.97 4.80 8.37 0.00 15.98 3.93 48 ER7a ExonRegion 0 5.02 0.82 0.00 0.84 8.84 7.77 6.75 0.00 3.22 3.87 15.20 23.16 33.99 13.12 3.72 3.11 6.45 1.93 2.76 7.98 4.36 19.36 8.02 49 E7_Da KnownBoundary 0 3.63 0.00 0.00 2.06 12.14 2.90 4.28 0.00 4.66 6.02 16.53 20.11 26.95 7.59 5.69 11.88 0.00 0.00 0.00 2.43 12.11 11.33 4.35 50 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 ER7b ExonRegion 0 9.13 0.54 0.00 1.87 17.75 9.55 4.63 0.00 2.59 2.05 11.45 24.69 18.66 12.77 4.03 4.78 5.26 0.73 1.69 7.92 3.88 13.04 5.03 52 E7_Db NovelBoundary 0 0.00 5.79 0.00 9.22 12.82 2.21 9.01 3.78 3.12 2.66 9.53 17.86 46.59 9.48 0.00 4.27 4.77 0.00 0.00 11.38 0.00 8.88 12.46 53 Ix Intron 0 5.16 2.50 0.74 5.61 7.98 9.57 3.60 2.18 5.75 2.27 12.00 23.04 30.50 9.01 3.16 4.55 5.72 0.48 1.60 6.34 2.49 15.41 7.69 54 Ix_SR1 SilentIntronRegion 0 5.18 2.55 0.75 5.60 8.04 9.63 3.62 2.21 5.81 2.32 12.16 23.18 30.65 9.06 3.13 4.45 5.64 0.49 1.58 6.40 2.53 15.53 7.74 55 Ix_AR1 ActiveIntronRegion 0 4.23 0.00 0.00 5.85 4.99 6.52 2.53 0.65 2.36 0.00 3.48 16.07 23.03 6.57 4.64 10.24 10.56 0.00 3.19 3.50 0.00 8.80 5.48 56 I7 Intron 0 9.11 1.72 2.14 5.96 12.22 13.63 4.58 1.01 8.16 3.01 13.36 19.58 23.91 10.04 4.57 10.66 8.61 1.86 2.91 6.52 4.45 15.35 11.11 57 I7_AR1 ActiveIntronRegion 0 12.79 2.03 2.35 8.04 9.71 11.99 7.38 0.36 5.47 2.88 15.74 21.17 25.16 11.69 4.33 11.49 12.62 2.97 3.73 6.93 6.47 18.74 10.93 58 I7_AR2 ActiveIntronRegion 0 1.76 0.50 1.13 8.55 28.16 20.43 1.59 0.66 10.07 2.95 17.04 23.25 33.84 13.12 3.97 6.36 10.92 1.45 3.97 8.90 5.93 10.67 9.85 59 I7_AR3 ActiveIntronRegion 0 2.94 0.00 4.63 12.42 17.69 7.13 3.60 1.73 9.61 2.99 27.60 26.70 17.20 10.74 4.51 22.46 10.82 1.85 6.02 5.91 6.00 10.65 16.64 60 I7_AR4 ActiveIntronRegion 1 9.17 1.02 4.90 10.34 15.16 9.47 7.61 1.73 10.70 6.40 36.56 25.98 18.76 12.86 7.01 39.38 11.00 1.85 0.00 2.30 14.69 19.62 35.73 61 I7_AR5 ActiveIntronRegion 1 8.47 2.03 4.90 9.99 12.04 6.42 7.94 1.73 13.59 6.88 38.66 27.42 17.20 15.97 5.80 39.13 10.45 1.85 1.59 2.13 15.06 16.67 41.11 62 I7_AR6 ActiveIntronRegion 1 11.38 2.03 2.76 9.54 10.03 6.65 8.94 1.73 13.59 6.88 36.48 19.48 17.59 19.49 4.71 38.64 14.44 0.69 3.19 4.52 13.22 21.88 36.34 63 I7_AR7 ActiveIntronRegion 1 12.70 2.03 2.45 9.54 12.93 7.34 11.92 1.73 13.17 6.88 31.89 18.76 14.07 20.84 2.90 37.65 14.30 0.00 3.19 6.74 13.22 28.82 37.69 64 I7_SR1 SilentIntronRegion 0 8.49 1.85 1.92 3.67 10.71 14.37 3.20 1.35 8.98 2.78 8.79 17.58 22.65 8.08 4.78 7.92 5.57 1.35 2.20 6.22 2.16 14.01 8.95 65 Ix Intron 0 6.98 2.82 0.90 7.10 9.67 11.88 4.90 2.53 7.02 4.60 7.94 21.40 27.57 8.60 5.19 4.90 2.86 0.05 1.38 6.15 1.40 12.71 4.67 66 Ix_SR1 SilentIntronRegion 0 6.98 2.82 0.90 7.11 9.68 11.88 4.90 2.54 7.03 4.60 7.94 21.41 27.59 8.60 5.19 4.90 2.86 0.05 1.38 6.15 1.40 12.72 4.67 67 ER8a ExonRegion 0 31.06 5.92 3.18 15.93 23.12 14.93 8.15 5.70 7.12 3.54 7.65 14.06 17.34 4.73 10.82 3.63 4.83 0.59 2.66 4.67 2.30 9.62 6.45 68 IG17_AR5 ActiveIntergenicRegion 0 12.78 2.85 1.39 9.04 18.97 23.93 3.17 3.48 6.68 3.59 1.97 3.99 3.42 0.97 2.96 1.80 1.10 0.92 1.13 2.03 0.68 2.92 1.04 69 IG17_AR2 ActiveIntergenicRegion 0 6.02 0.31 5.25 5.10 6.75 0.99 1.18 4.35 4.73 2.68 0.00 0.79 0.00 0.00 0.00 0.00 1.07 0.00 0.00 0.00 1.14 37.42 11.57 70 IG17_SR1 SilentIntergenicRegion 0 11.92 1.65 6.91 3.82 6.10 3.29 3.85 3.90 5.40 2.76 0.00 2.21 0.00 0.23 0.00 0.00 0.20 0.00 0.76 0.00 2.92 50.55 32.21 71 IG17_AR1 ActiveIntergenicRegion 0 4.84 1.07 1.45 2.68 3.29 2.26 2.33 4.53 2.75 1.35 0.00 0.00 0.00 0.35 0.00 0.52 0.00 0.00 0.28 0.56 4.45 36.45 22.98