Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DBF4 Gene 0 51.28 87.96 64.82 47.21 72.74 52.53 122.54 46.92 12.76 61.16 126.75 145.14 93.32 90.48 74.53 64.56 85.55 29.68 20.06 60.75 5.00 26.34 8.01 2 413643 Transcript 0 1.74 2.96 2.29 1.00 1.99 2.90 2.89 1.27 0.90 1.52 4.39 0.00 0.00 2.30 0.00 0.00 0.00 1.06 0.00 4.41 0.00 1.22 1.84 3 265728 Transcript 0 3.72 17.20 10.31 6.87 7.30 6.82 11.30 4.62 1.75 10.54 3.00 7.94 11.67 8.79 9.41 4.77 6.21 4.03 4.32 10.96 0.77 1.37 1.50 4 495067 Transcript 0 0.00 0.94 0.45 2.24 0.51 0.41 6.56 0.40 0.57 1.44 2.68 4.50 4.96 0.22 3.20 0.46 6.08 1.70 0.00 4.41 0.55 0.00 0.86 5 431138 Transcript 1 3.26 6.51 6.21 3.76 3.99 0.00 35.29 12.98 5.64 7.68 42.54 18.61 44.96 27.19 0.00 36.66 8.23 5.76 3.76 8.50 3.15 5.57 3.16 6 486925 Transcript 0 3.05 0.16 1.13 1.69 0.00 0.00 0.69 0.00 0.00 0.00 1.31 0.17 0.94 1.36 0.35 1.90 5.55 0.00 0.76 3.91 0.00 0.00 0.00 7 430279 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 498144 Transcript 0 1.59 5.97 3.60 1.79 2.34 2.06 14.65 4.00 0.46 5.23 8.09 16.78 13.78 10.56 2.18 3.34 5.57 2.19 1.19 6.52 0.14 1.95 0.18 9 498726 Transcript 1 6.71 25.48 3.35 6.64 16.39 9.81 28.65 8.46 3.48 9.29 13.12 65.67 33.04 25.61 11.11 9.45 12.13 5.36 0.31 11.24 0.78 6.04 0.54 10 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER1b ExonRegion 0 1.26 0.99 1.20 0.00 2.90 2.83 3.57 0.03 0.00 0.15 2.55 0.00 0.00 2.43 0.25 0.59 1.96 1.15 1.32 2.35 0.00 1.73 2.29 12 E1_Ac KnownBoundary 0 3.11 21.31 1.63 0.00 4.33 22.20 32.24 0.00 0.00 1.67 5.26 0.00 0.00 3.00 4.45 0.00 0.00 4.56 9.60 3.26 0.00 2.45 7.85 13 ER1c ExonRegion 1 3.69 31.89 3.21 1.77 55.34 103.40 154.51 2.43 0.63 8.08 30.93 0.28 0.00 22.60 10.12 26.50 26.90 24.26 17.62 24.04 1.88 3.06 12.43 14 E1_Ad KnownBoundary 1 18.08 87.09 5.80 5.03 232.17 306.81 490.56 9.45 3.12 21.46 93.81 0.00 0.00 55.57 40.30 74.17 83.68 67.86 36.99 82.13 9.02 5.39 33.21 15 ER1d ExonRegion 1 7.00 59.14 8.48 4.09 86.99 207.22 228.94 4.30 2.07 19.38 67.30 4.24 0.00 51.74 31.74 55.01 67.37 48.38 18.20 50.50 2.79 3.15 15.52 16 E1_Ae KnownBoundary 0 3.19 42.76 6.65 0.00 25.81 65.47 61.96 2.46 1.79 6.45 29.69 0.00 0.00 40.26 14.59 45.80 15.43 31.30 4.52 20.71 4.88 0.00 0.00 17 E1_Af KnownBoundary 0 0.00 0.00 4.76 0.00 0.00 10.62 8.74 4.76 2.75 6.93 9.32 5.40 0.00 5.36 4.45 11.36 8.32 5.84 0.00 13.04 2.53 4.78 0.00 18 ER1e ExonRegion 0 1.37 20.93 7.21 1.60 9.60 34.73 28.27 2.54 1.45 13.83 17.96 4.33 1.66 24.46 14.16 25.35 14.76 22.72 3.00 21.03 1.43 2.21 0.69 19 ER1f ExonRegion 1 7.10 23.13 12.66 8.04 8.70 10.91 17.01 10.53 8.24 25.92 105.61 4.82 10.04 89.46 37.80 69.68 81.58 42.43 10.56 51.15 11.18 11.10 7.52 20 E1a_E2a KnownJunction 1 2.82 42.49 31.99 16.22 33.45 43.33 45.22 36.39 19.30 58.83 183.57 18.31 5.84 69.87 40.05 67.50 119.96 87.34 13.27 42.06 19.27 16.90 0.00 21 ER2a ExonRegion 1 9.67 73.08 24.36 26.85 117.67 219.49 322.28 34.08 16.94 70.33 268.08 120.42 71.68 223.41 69.42 255.16 194.18 98.80 21.79 90.31 18.80 36.27 16.39 22 E2_Da KnownBoundary 1 6.74 103.47 20.37 35.06 89.90 108.12 262.77 17.17 15.22 94.80 220.27 125.44 60.71 148.27 56.00 177.47 181.30 84.40 12.80 82.96 13.22 24.86 15.28 23 E2a_E3a KnownJunction 0 3.26 6.51 6.21 3.76 3.99 0.00 35.29 12.98 5.64 7.68 42.54 18.61 44.96 27.19 0.00 36.66 8.23 5.76 3.76 8.50 3.15 5.57 3.16 24 ER2b ExonRegion 1 14.01 97.68 29.12 41.18 65.00 51.25 155.59 26.51 13.21 80.55 220.88 134.07 124.44 154.61 55.19 126.86 183.38 72.16 14.58 90.45 11.86 27.45 10.05 25 E2_Db KnownBoundary 0 0.00 0.00 1.77 3.90 12.65 2.84 12.72 0.00 0.00 1.67 5.37 0.00 15.10 0.00 0.00 0.00 0.00 0.00 0.00 9.65 3.09 0.00 0.00 26 E2b_E3a KnownJunction 1 30.15 87.62 51.68 39.19 43.63 45.14 126.53 34.09 18.20 98.61 300.50 86.88 53.89 97.53 30.16 55.88 260.31 43.19 17.88 64.17 13.59 10.90 0.00 27 ER2c ExonRegion 0 0.00 0.94 0.45 2.24 0.51 0.41 6.56 0.40 0.57 1.44 2.68 4.50 4.96 0.22 3.20 0.46 6.08 1.70 0.00 4.41 0.55 0.00 0.86 28 ER3a ExonRegion 1 23.25 84.64 54.93 54.31 52.30 44.14 145.29 46.34 19.69 93.10 296.99 191.53 142.76 197.52 67.21 108.09 254.98 58.40 31.06 101.32 15.73 40.95 9.67 29 E3a_E4a KnownJunction 0 21.86 65.45 41.10 40.12 46.35 22.83 127.19 42.43 10.53 60.84 164.88 213.37 207.78 114.37 61.07 62.21 143.15 48.46 26.45 84.12 7.29 40.05 7.34 30 ER3b ExonRegion 0 3.05 0.16 1.13 1.69 0.00 0.00 0.69 0.00 0.00 0.00 1.31 0.17 0.94 1.36 0.35 1.90 5.55 0.00 0.76 3.91 0.00 0.00 0.00 31 E4_Aa NovelBoundary 0 10.22 19.54 19.43 5.36 7.13 0.00 40.36 10.23 5.90 8.43 0.00 0.00 12.66 2.53 4.45 3.93 0.00 1.70 0.00 23.07 0.00 0.00 0.00 32 ER4a ExonRegion 1 27.10 63.60 43.10 44.49 74.50 32.83 176.03 34.33 13.20 82.87 191.36 166.81 132.15 196.52 62.97 78.03 188.73 46.37 29.61 100.33 10.93 46.21 10.19 33 E4a_E5a KnownJunction 1 38.53 110.31 45.39 57.30 125.98 48.78 281.85 38.12 13.40 110.16 206.16 235.88 219.95 239.92 87.77 99.46 211.22 45.06 25.04 137.36 11.43 59.46 8.71 34 ER5a ExonRegion 1 33.92 96.68 37.78 42.27 77.90 49.09 164.68 43.04 12.58 87.51 125.09 187.16 135.07 170.93 61.71 87.04 110.11 38.67 17.70 76.05 3.75 24.62 6.04 35 E5_Da NovelBoundary 0 0.00 9.34 11.65 1.76 7.98 4.94 17.09 5.75 3.10 4.78 7.37 32.86 13.15 12.18 0.00 3.85 3.46 4.31 0.00 26.53 0.00 7.96 0.00 36 E5a_E6b KnownJunction 0 21.63 116.10 52.98 30.80 32.94 37.02 146.09 51.34 6.89 72.93 55.75 119.44 68.34 64.34 20.64 52.98 60.78 39.34 20.05 25.06 2.97 5.33 3.50 37 I5 Intron 0 2.74 5.79 1.89 1.58 1.39 1.42 8.91 0.67 0.00 0.88 2.50 13.98 20.57 5.81 2.96 1.54 6.84 0.48 0.00 4.41 0.57 0.54 1.52 38 I5_SR1 SilentIntronRegion 0 2.77 5.85 1.91 1.59 1.40 1.44 9.00 0.67 0.00 0.89 2.53 14.12 20.78 5.87 2.99 1.55 6.89 0.48 0.00 4.45 0.58 0.54 1.54 39 E6_Ab NovelBoundary 1 0.00 2.50 3.67 5.33 0.00 0.00 15.32 0.00 1.77 0.00 9.53 12.60 41.39 4.94 4.45 4.36 8.88 0.00 0.00 8.76 0.00 0.00 0.00 40 ER6a ExonRegion 0 1.59 5.97 3.60 1.79 2.34 2.06 14.65 4.00 0.46 5.23 8.09 16.78 13.78 10.56 2.18 3.34 5.57 2.19 1.19 6.52 0.14 1.95 0.18 41 ER6b ExonRegion 0 41.97 111.34 59.00 41.96 99.99 65.34 245.04 65.75 9.59 99.99 209.72 344.53 236.48 168.22 89.82 103.91 149.45 52.47 26.28 98.10 5.10 38.49 15.19 42 E6a_E7b KnownJunction 0 49.86 72.42 55.08 31.20 90.07 61.67 186.76 36.56 12.70 76.26 119.45 77.73 40.42 30.14 4.94 42.30 112.39 40.25 15.06 74.97 2.41 18.13 15.88 43 I6_AR1 ActiveIntronRegion 0 0.00 0.00 0.00 6.81 0.00 0.00 2.65 0.00 7.41 0.00 0.00 0.00 0.00 4.87 0.00 0.00 0.00 0.00 0.00 19.15 0.00 0.00 0.00 44 I6_AR2 ActiveIntronRegion 0 2.22 4.00 1.68 3.99 4.56 2.64 18.23 4.05 2.41 2.24 3.29 29.68 18.05 7.67 4.90 5.07 4.33 2.18 2.09 9.21 1.16 3.28 0.77 45 E7_Aa NovelBoundary 0 16.74 25.65 9.61 14.05 15.53 13.97 43.63 16.55 10.07 13.59 14.48 26.56 19.48 24.19 9.89 16.15 17.58 4.23 0.00 20.77 0.00 6.25 4.35 46 ER7a ExonRegion 1 13.42 24.98 5.05 13.27 20.64 14.63 31.55 14.61 5.22 8.83 11.87 23.14 30.37 13.67 7.76 10.35 6.41 4.18 0.61 17.25 1.55 12.08 1.08 47 E7_Ab KnownBoundary 0 10.45 40.58 5.00 9.16 39.05 19.14 53.48 14.29 9.61 12.97 14.69 25.06 20.29 12.77 4.45 13.07 17.67 0.00 0.00 21.28 2.53 0.00 0.00 48 ER7b ExonRegion 1 43.51 93.83 52.35 34.34 56.27 74.68 138.98 40.19 13.59 69.29 66.36 180.15 114.51 102.50 41.18 59.86 70.05 34.44 6.72 54.85 1.10 24.54 7.10 49 E7a_E8a KnownJunction 1 63.57 73.41 31.87 26.27 46.69 57.52 124.49 29.37 4.98 33.47 56.65 228.97 127.10 97.65 67.62 68.96 29.92 11.40 4.14 28.51 2.53 25.72 4.10 50 E7a_E8b KnownJunction 1 0.00 25.98 1.66 0.00 12.14 5.00 25.75 2.30 1.74 9.75 14.37 108.19 35.71 37.55 14.46 8.54 17.86 6.55 0.00 5.24 0.00 0.00 0.00 51 E7a_E9b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 ER8a ExonRegion 1 41.80 68.63 36.15 27.94 32.78 55.93 95.66 36.30 5.56 46.45 65.72 225.13 124.29 103.13 60.93 70.59 38.79 21.25 11.95 32.98 2.20 30.21 2.94 53 ER8b ExonRegion 0 44.80 71.32 52.69 41.89 53.20 55.23 142.80 54.24 11.00 75.07 153.48 231.11 134.67 130.28 63.69 83.15 109.01 30.97 18.51 58.21 4.72 28.18 7.69 54 E8a_E9a KnownJunction 1 65.86 74.13 67.12 58.50 86.76 64.68 229.65 78.20 12.38 95.25 235.85 189.51 118.50 133.09 48.95 81.09 182.89 30.34 23.81 98.50 5.56 32.03 15.79 55 E8a_E9b KnownJunction 0 3.48 5.92 4.58 2.00 3.99 5.79 5.79 2.55 1.79 3.04 6.84 0.00 0.00 4.59 0.00 0.00 0.00 2.11 0.00 8.82 0.00 2.45 3.67 56 E9_Aa NovelBoundary 0 16.82 39.99 17.27 22.27 26.57 5.79 18.15 19.39 1.77 16.47 9.84 50.57 0.00 4.65 13.35 14.44 15.80 3.65 3.76 26.08 0.00 0.00 0.00 57 ER9a ExonRegion 0 60.66 53.56 73.21 51.44 81.78 78.50 212.24 63.40 11.71 84.85 217.20 204.67 117.55 124.53 72.48 87.29 168.77 36.63 20.45 90.05 9.92 28.03 13.74 58 E9_Ab KnownBoundary 1 113.72 79.92 64.25 44.45 82.34 97.50 262.11 50.77 13.40 70.11 130.35 361.32 131.97 160.05 130.91 152.10 68.26 39.13 23.06 63.21 7.91 44.09 15.62 59 ER9b ExonRegion 1 103.80 111.51 56.31 47.21 77.56 87.86 181.26 45.77 12.74 69.21 116.38 298.15 187.39 122.95 76.26 87.92 83.41 58.30 13.22 76.75 6.41 34.30 17.66 60 E9a_E10a KnownJunction 0 126.99 141.69 85.12 73.08 73.60 83.25 213.57 62.06 20.05 97.08 199.68 326.21 214.11 172.82 94.32 64.94 149.51 51.11 13.84 98.30 8.83 52.42 14.08 61 ER10a ExonRegion 0 146.77 124.01 106.75 76.98 154.58 98.78 288.65 72.30 19.95 109.88 313.32 351.85 244.24 246.80 150.08 108.37 229.16 53.69 43.25 129.05 10.68 45.44 7.45 62 E10_Da KnownBoundary 0 160.25 134.78 128.38 86.60 213.41 82.68 389.38 107.45 25.40 142.21 353.41 247.88 179.53 180.29 139.32 108.86 241.61 44.19 67.20 139.47 14.15 44.15 8.62 63 ER10b ExonRegion 0 129.98 197.94 91.90 77.97 147.21 87.79 243.02 83.27 23.57 117.99 314.11 282.51 244.70 122.40 67.60 86.52 197.11 48.19 34.38 118.68 10.74 52.95 17.01 64 E10_Db NovelBoundary 0 10.82 0.00 9.96 3.86 12.99 5.68 55.16 7.43 0.00 7.15 7.58 37.36 13.31 12.18 10.26 8.12 17.20 0.00 0.00 12.34 2.47 0.00 4.35 65 E10b_E11a KnownJunction 0 80.46 216.47 81.55 83.94 141.85 129.41 321.55 79.77 22.92 121.36 306.60 355.92 344.78 193.71 89.13 103.31 206.92 60.11 33.41 118.12 15.57 44.15 15.88 66 E10b_E12a NovelJunction 0 10.59 28.81 17.98 18.01 23.51 23.11 46.94 25.55 9.69 34.20 79.55 158.45 46.75 54.27 90.74 28.28 43.76 19.15 9.13 9.14 2.90 16.41 11.78 67 ER11a ExonRegion 0 75.60 148.34 112.61 94.94 186.51 147.69 304.39 71.68 17.63 107.81 287.17 430.59 283.54 194.80 143.16 130.04 189.37 58.26 37.89 137.21 6.66 50.50 13.11 68 E11a_E12a KnownJunction 0 105.57 205.29 145.80 109.98 174.53 158.83 317.31 72.66 28.62 141.11 397.47 449.55 379.20 224.26 231.16 255.92 184.39 68.90 114.83 163.76 9.27 147.21 13.83 69 I11_SR3 SilentIntronRegion 0 7.77 18.77 9.66 1.70 14.54 3.28 22.85 2.34 1.12 2.76 5.07 3.50 9.79 2.61 3.01 4.72 4.16 1.74 1.50 3.54 0.00 1.80 0.00 70 E12_Aa NovelBoundary 0 14.67 11.45 19.96 12.65 23.17 0.00 36.48 11.67 1.36 6.12 7.05 27.91 12.17 4.89 4.45 4.36 0.00 2.57 0.00 2.75 0.00 0.00 10.67 71 ER12a ExonRegion 0 100.87 179.84 169.71 130.45 131.95 106.42 234.75 108.24 26.52 157.99 398.12 426.18 279.50 251.89 230.29 290.25 240.35 100.47 135.18 176.66 8.81 168.70 30.93 72 E12_Da KnownBoundary 0 176.33 248.05 222.17 179.66 164.86 93.92 274.47 162.08 38.83 229.40 419.37 425.09 213.46 260.52 236.60 318.12 320.43 112.05 168.57 205.17 8.53 190.13 44.22 73 ER12b ExonRegion 0 240.10 270.50 225.88 161.94 230.35 164.16 384.49 148.08 43.51 175.58 475.52 501.10 417.38 284.76 221.29 221.27 322.66 100.97 82.11 166.50 15.53 104.21 29.77 74 E12_Db KnownBoundary 0 326.28 370.13 197.78 138.91 241.43 208.29 468.48 156.49 44.73 126.36 353.83 447.45 304.53 290.78 212.75 240.79 300.23 94.31 116.80 166.57 21.81 65.27 34.66 75 ER12c ExonRegion 0 130.07 214.38 177.38 117.80 171.68 94.83 234.37 124.21 29.66 135.87 226.86 308.87 154.01 152.85 195.18 110.97 122.39 42.10 39.37 114.91 6.33 52.59 13.44 76 E12_Dc KnownBoundary 0 0.00 15.46 9.76 4.96 0.00 0.00 7.77 4.48 1.10 1.37 0.00 6.30 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 77 E12_Dd KnownBoundary 0 0.00 8.49 4.32 5.29 23.77 10.11 15.24 4.60 1.53 2.47 0.00 0.00 0.00 0.00 4.45 4.36 0.00 0.00 0.00 3.13 0.00 0.00 3.93 78 ER12d ExonRegion 1 2.82 72.53 13.07 13.63 35.68 7.95 27.80 9.79 3.71 5.35 1.93 14.43 18.76 15.16 21.28 6.93 0.00 0.00 0.00 10.64 0.00 4.86 2.94 79 ER12e ExonRegion 0 3.72 17.20 10.31 6.87 7.30 6.82 11.30 4.62 1.75 10.54 3.00 7.94 11.67 8.79 9.41 4.77 6.21 4.03 4.32 10.96 0.77 1.37 1.50