Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CROT Gene 0 24.04 26.12 30.62 40.69 81.98 29.75 31.13 99.65 96.04 35.66 27.44 30.63 18.39 33.07 21.44 35.25 28.98 12.38 7.99 47.40 19.93 24.16 16.79 2 419147 Transcript 0 0.37 1.41 0.57 0.34 3.12 2.78 1.57 1.01 0.12 0.04 1.83 1.01 0.00 2.18 1.87 2.43 0.57 1.19 0.31 2.28 1.65 0.16 2.36 3 412227 Transcript 0 5.88 6.89 8.23 7.45 16.96 18.29 14.82 39.33 20.50 9.84 6.63 14.94 6.69 8.24 5.05 5.34 5.28 1.73 3.10 9.51 1.28 6.66 2.10 4 331536 Transcript 0 39.00 35.05 59.17 62.23 74.70 21.66 23.99 238.79 180.64 60.42 21.12 29.73 14.28 17.37 34.01 18.85 17.10 6.50 5.00 45.70 8.06 41.40 8.88 5 442291 Transcript 0 2.41 5.47 1.94 3.41 7.68 3.22 3.80 14.08 11.36 2.67 2.65 1.10 1.77 2.30 2.60 2.93 2.34 0.40 0.00 5.00 0.73 0.57 0.97 6 488850 Transcript 0 1.43 5.48 7.86 7.55 13.24 1.77 9.46 9.51 7.43 2.15 3.95 8.21 15.60 10.04 2.67 5.68 1.62 2.38 3.17 19.68 1.13 5.26 4.85 7 469785 Transcript 1 5.82 7.56 3.13 14.18 32.96 9.75 18.93 27.26 15.89 13.35 5.69 23.16 13.10 7.06 2.81 11.15 4.99 1.44 4.59 21.95 3.41 7.27 1.62 8 479014 Transcript 0 10.57 5.92 1.06 4.80 27.10 11.25 11.29 23.66 9.64 4.05 8.97 15.45 14.01 9.12 4.25 9.30 8.79 0.96 1.10 10.57 0.77 1.83 3.04 9 ER1a ExonRegion 0 1.47 5.63 0.09 1.36 9.06 6.77 4.68 0.93 0.48 0.18 4.91 0.00 0.00 5.75 6.25 0.69 2.29 0.00 1.23 5.24 6.61 0.64 4.29 10 ER1b ExonRegion 0 4.23 14.24 3.68 2.73 18.73 14.67 11.92 3.46 1.24 2.29 9.66 0.00 0.00 22.74 11.61 8.92 13.20 0.92 3.19 19.15 31.95 12.50 8.81 11 ER1c ExonRegion 0 10.17 18.78 10.40 4.20 16.54 21.47 28.34 13.49 20.21 8.44 11.57 0.00 0.91 19.85 17.89 22.50 32.37 4.23 1.95 31.18 39.67 16.21 15.42 12 E1a_E2b KnownJunction 0 6.74 8.88 14.69 8.76 18.93 42.19 17.67 23.33 60.59 15.28 9.16 0.00 12.34 14.13 15.20 39.82 20.57 5.97 0.00 65.45 5.62 8.76 17.24 13 ER2a ExonRegion 0 1.76 1.36 3.47 1.14 4.01 5.50 1.99 4.03 8.65 2.48 2.90 0.00 1.56 2.44 1.45 4.95 2.75 0.62 0.00 7.45 0.73 1.04 1.96 14 ER2b ExonRegion 1 8.54 5.22 15.51 8.45 15.61 16.85 5.93 25.98 38.82 13.43 26.63 2.98 9.74 16.76 10.67 13.37 38.84 3.63 0.00 27.82 34.84 5.12 7.64 15 E2a_E3a KnownJunction 1 7.26 19.08 29.42 8.89 25.21 15.79 10.42 37.34 39.87 21.52 60.70 37.66 26.78 19.31 17.80 15.89 98.36 8.95 0.00 48.39 95.63 14.39 27.15 16 ER3a ExonRegion 0 5.73 30.67 32.67 28.21 32.46 14.47 18.72 49.49 75.31 22.46 34.54 37.88 43.93 34.93 25.68 43.66 44.22 32.32 6.56 72.92 24.56 31.74 44.24 17 E3a_E4a KnownJunction 0 0.00 0.00 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 4.35 18 E3a_E5a KnownJunction 0 3.78 15.06 29.45 37.39 109.59 67.12 80.16 52.62 66.69 28.42 39.85 39.91 41.07 38.08 28.56 12.48 32.82 15.05 4.80 62.51 16.93 38.21 19.63 19 ER4a ExonRegion 0 0.00 0.00 0.96 0.00 3.41 4.37 1.61 0.62 0.00 0.00 2.42 4.02 0.00 0.64 1.24 4.67 0.00 3.19 0.00 3.88 0.00 0.00 0.80 20 E4_Da NovelBoundary 0 6.08 3.35 8.84 8.79 19.61 2.50 1.90 14.95 10.36 6.98 0.00 5.25 6.82 4.77 0.00 0.00 4.21 4.73 13.84 8.50 2.35 0.00 0.00 21 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.51 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 1.58 0.00 0.00 0.00 0.00 0.00 22 ER5a ExonRegion 0 15.24 38.17 36.41 40.25 100.97 68.14 52.37 71.24 77.43 31.15 57.62 71.94 61.83 65.33 30.85 51.05 43.28 20.03 11.06 77.46 25.55 49.07 35.45 23 E5_Da KnownBoundary 0 6.15 25.59 6.27 7.13 18.68 36.68 12.14 43.66 18.72 9.27 5.26 6.30 20.78 2.41 4.45 4.10 8.32 0.00 0.00 5.24 0.00 8.94 0.00 24 E5a_E6a KnownJunction 0 12.15 13.94 19.04 32.90 52.12 18.00 12.28 37.54 65.45 27.24 43.43 38.71 26.13 59.63 15.08 49.65 41.61 22.30 0.00 63.66 24.34 38.45 11.61 25 ER5b ExonRegion 0 5.88 6.89 8.23 7.45 16.96 18.29 14.82 39.33 20.50 9.84 6.63 14.94 6.69 8.24 5.05 5.34 5.28 1.73 3.10 9.51 1.28 6.66 2.10 26 E6_Aa NovelBoundary 0 6.59 0.00 5.09 7.79 10.70 2.90 10.02 9.78 0.00 2.39 5.05 0.00 0.00 0.00 13.35 8.12 0.00 0.00 4.61 6.20 12.05 0.00 0.00 27 ER6a ExonRegion 0 9.25 18.08 26.12 31.47 52.82 27.00 11.06 41.77 64.16 33.73 61.10 33.99 35.70 47.58 19.02 47.83 55.26 17.93 10.32 59.26 37.05 22.03 15.99 28 E6_Ab KnownBoundary 0 9.41 23.68 46.75 40.09 53.40 26.86 14.49 52.21 57.35 45.05 67.44 43.51 51.13 57.33 14.46 57.51 70.50 25.33 8.94 93.51 56.96 19.17 15.11 29 ER6b ExonRegion 1 9.81 18.70 31.93 28.66 58.24 25.06 22.86 46.29 58.92 29.79 50.53 61.86 22.61 76.79 16.34 76.14 55.08 20.34 20.68 74.75 43.32 35.88 35.29 30 E6_Da NovelBoundary 0 11.63 0.00 4.73 5.76 15.03 8.69 4.50 13.14 2.52 3.04 0.00 0.00 12.50 0.00 4.45 0.00 0.00 2.11 0.00 11.95 3.15 0.00 0.00 31 E6a_E7a KnownJunction 0 9.85 18.15 25.69 15.65 84.55 34.87 34.14 26.08 44.47 36.75 29.85 70.52 29.54 63.69 15.45 73.06 46.56 18.36 8.19 44.23 24.09 34.41 42.94 32 E7_Aa NovelBoundary 1 6.96 0.00 4.82 3.46 0.00 0.00 4.50 4.07 9.06 0.00 0.00 43.06 20.45 7.12 0.00 4.10 0.00 3.94 0.00 8.82 0.00 0.00 3.67 33 ER7a ExonRegion 1 12.41 12.66 20.12 20.08 63.06 28.62 23.37 36.71 55.91 28.42 34.53 48.94 27.88 64.94 16.83 66.20 42.89 13.36 10.17 48.32 37.45 32.95 21.61 34 E7a_E8a KnownJunction 1 6.96 18.22 14.72 21.71 18.68 18.91 19.12 30.39 48.90 18.40 35.32 36.61 12.99 56.86 4.45 66.05 38.99 4.52 19.67 40.14 37.75 21.49 24.84 35 ER8a ExonRegion 1 10.56 10.78 18.25 13.84 31.50 22.33 21.18 40.33 50.03 25.23 35.11 42.30 17.94 70.11 16.93 52.71 30.80 13.93 11.48 55.48 58.17 32.61 33.11 36 E8_Da KnownBoundary 0 3.04 6.51 6.86 6.43 10.02 0.00 25.13 6.04 10.50 3.63 4.37 0.00 13.64 12.01 0.00 11.54 8.60 8.21 3.86 36.69 6.24 5.39 8.28 37 E8a_E9b KnownJunction 0 0.00 6.64 7.78 11.75 62.05 28.85 12.45 26.82 28.88 11.71 28.59 30.01 18.83 27.90 6.30 45.63 13.28 2.16 7.72 11.89 55.29 25.84 10.50 38 ER8b ExonRegion 0 1.43 5.48 7.86 7.55 13.24 1.77 9.46 9.51 7.43 2.15 3.95 8.21 15.60 10.04 2.67 5.68 1.62 2.38 3.17 19.68 1.13 5.26 4.85 39 E8_Db NovelBoundary 0 20.23 3.35 15.82 16.05 31.83 2.73 26.41 2.01 11.75 5.00 2.11 5.70 6.49 4.59 0.00 11.96 0.00 0.00 0.00 3.00 0.00 17.57 4.01 40 I8 Intron 0 3.30 6.88 4.43 13.56 28.69 6.97 13.48 17.74 14.44 11.93 6.37 22.10 17.39 10.60 2.22 8.37 7.32 2.10 2.96 25.23 1.45 4.49 3.17 41 I8_SR1 SilentIntronRegion 0 3.30 6.89 4.43 13.58 28.72 6.98 13.50 17.76 14.46 11.94 6.37 22.12 17.41 10.61 2.23 8.37 7.32 2.10 2.96 25.26 1.45 4.50 3.17 42 E9_Aa NovelBoundary 1 3.48 20.98 3.49 16.61 31.15 0.00 12.06 21.81 18.14 19.34 0.00 48.47 13.15 0.00 4.45 11.62 0.00 2.03 0.00 21.54 0.00 8.08 0.00 43 ER9a ExonRegion 1 5.82 7.56 3.13 14.18 32.96 9.75 18.93 27.26 15.89 13.35 5.69 23.16 13.10 7.06 2.81 11.15 4.99 1.44 4.59 21.95 3.41 7.27 1.62 44 E9_Ab KnownBoundary 0 9.63 6.18 2.96 20.94 66.30 18.57 47.25 27.44 25.20 22.19 16.58 18.61 20.45 6.47 0.00 11.36 7.76 2.36 3.86 35.03 5.56 0.00 0.00 45 ER9b ExonRegion 0 12.08 25.87 16.85 37.00 97.94 43.75 41.84 47.73 58.49 31.95 52.48 41.39 23.95 60.27 19.84 53.15 60.76 27.58 22.81 68.89 51.37 23.52 27.60 46 E9a_E10a KnownJunction 0 7.48 30.06 20.64 34.29 106.71 37.88 51.76 57.42 67.71 39.43 73.12 55.37 28.73 61.92 35.60 52.46 70.03 26.16 13.37 96.51 50.29 36.13 42.77 47 ER10a ExonRegion 0 5.84 19.94 15.56 36.77 120.99 51.67 31.52 64.97 66.43 45.85 50.42 40.57 22.53 63.94 21.00 54.08 54.39 22.86 7.96 97.73 35.98 28.72 34.35 48 E10_Ab KnownBoundary 0 7.56 12.37 10.76 28.50 80.39 47.30 29.59 56.85 58.51 43.78 28.69 43.96 0.00 38.02 4.45 27.09 31.60 12.44 4.05 71.59 17.54 26.33 16.13 49 E10_Da KnownBoundary 0 19.48 24.40 17.15 30.57 119.61 28.22 28.66 29.53 33.54 18.51 36.48 42.76 42.21 30.96 9.27 41.87 23.09 13.64 9.32 40.27 15.01 27.56 15.79 50 ER10b ExonRegion 1 14.15 23.26 17.69 41.48 114.22 44.93 33.02 62.22 67.78 44.59 43.37 50.87 32.54 42.43 7.62 49.23 40.85 20.44 10.95 76.33 27.13 34.77 16.89 51 ER10c ExonRegion 0 21.13 20.78 20.49 54.26 91.27 25.16 49.01 48.77 65.56 33.69 58.02 42.69 39.50 43.06 18.86 66.97 67.20 31.50 18.71 85.94 16.77 33.27 18.81 52 E10b_E11a KnownJunction 0 19.19 21.31 14.81 70.79 75.64 22.88 60.68 43.62 73.21 37.07 76.81 62.27 69.80 55.68 15.20 73.40 68.82 36.02 16.38 107.00 17.36 38.33 33.12 53 ER11a ExonRegion 0 23.03 21.27 22.01 61.98 116.95 47.41 51.71 61.00 71.38 36.51 43.83 46.69 26.58 56.70 23.69 56.85 48.74 27.59 12.59 78.56 21.84 26.31 29.34 54 E11a_E12a KnownJunction 0 7.11 22.96 26.94 51.34 156.62 31.80 56.31 74.14 90.13 43.09 46.33 33.46 14.77 44.91 4.45 39.39 71.53 18.94 4.42 72.35 14.70 22.84 32.35 55 I11_AR4 ActiveIntronRegion 1 4.23 0.00 0.00 2.73 10.70 0.00 3.61 0.63 1.24 2.09 0.00 4.33 17.05 3.17 1.71 2.97 0.00 0.00 0.00 1.74 0.00 4.36 0.00 56 ER12a ExonRegion 0 23.36 17.67 30.30 49.31 121.97 59.01 44.64 58.17 71.67 35.88 52.42 57.47 30.82 47.89 24.83 60.89 43.42 25.25 10.35 70.36 20.75 25.00 22.79 57 E12a_E13a KnownJunction 1 22.82 24.54 36.34 46.85 112.82 57.24 37.71 85.02 78.44 35.48 31.32 92.28 15.10 68.34 25.09 104.25 26.37 25.12 4.80 73.25 17.48 23.45 32.61 58 ER13a ExonRegion 0 28.20 20.86 42.25 46.97 107.43 45.49 50.54 91.82 88.88 46.11 51.28 50.51 35.22 63.15 22.00 70.51 71.31 29.70 8.29 86.76 34.01 33.28 38.37 59 E13_Da KnownBoundary 1 5.78 3.35 1.63 8.69 23.17 7.72 28.75 25.71 13.19 4.62 10.06 12.30 46.26 14.19 10.14 0.00 3.65 0.00 0.00 12.53 0.00 5.27 0.00 60 E13a_E14a KnownJunction 0 10.45 16.38 49.79 30.37 90.41 28.00 48.00 65.68 79.98 27.94 42.59 25.96 7.47 43.20 17.80 27.26 40.49 23.09 9.60 70.18 40.90 30.43 23.47 61 ER13b ExonRegion 0 10.57 5.92 1.06 4.80 27.10 11.25 11.29 23.66 9.64 4.05 8.97 15.45 14.01 9.12 4.25 9.30 8.79 0.96 1.10 10.57 0.77 1.83 3.04 62 E13_Db NovelBoundary 0 25.78 0.00 4.97 9.86 24.70 5.51 8.35 33.56 13.72 8.30 14.53 13.80 0.00 12.30 20.40 4.36 26.46 0.00 0.00 16.81 2.66 5.33 4.35 63 E14_Aa NovelBoundary 0 7.04 5.72 2.96 7.86 12.31 7.55 21.82 17.91 15.19 2.87 13.32 0.00 0.00 6.89 5.44 21.79 3.55 8.12 3.86 20.84 6.05 0.00 12.80 64 ER14a ExonRegion 0 24.90 32.61 52.99 54.38 140.18 55.36 63.34 91.94 93.38 39.85 54.79 59.39 21.70 59.04 23.87 83.08 60.02 35.91 20.16 84.64 45.77 30.71 34.77 65 E14a_E15a KnownJunction 0 31.71 23.61 63.60 41.89 126.32 44.80 43.77 70.48 88.92 40.51 55.28 49.22 0.00 36.97 23.86 100.83 71.53 29.89 8.19 71.78 48.43 28.84 42.77 66 E15_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 8.66 0.00 2.25 48.92 97.19 17.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 ER15a ExonRegion 0 22.62 26.58 44.42 58.87 108.80 44.78 31.78 126.73 181.74 51.95 52.84 41.69 23.75 55.01 32.92 80.75 43.55 31.77 12.36 85.67 45.46 32.90 32.97 68 E15a_E16a KnownJunction 0 26.38 17.30 40.15 71.49 171.14 67.29 61.03 123.63 225.20 51.20 57.65 24.91 19.80 63.92 19.41 52.72 48.62 35.24 9.13 67.62 42.94 20.27 14.60 69 ER16a ExonRegion 0 41.37 40.90 28.57 59.21 181.17 57.75 66.18 134.51 190.88 57.32 61.17 34.69 24.28 62.85 22.29 73.81 59.42 28.11 16.73 79.72 43.63 36.40 34.50 70 E16a_E17a KnownJunction 0 65.27 63.87 24.10 70.85 212.73 64.17 89.03 175.43 252.60 79.89 40.85 46.82 13.64 82.94 46.73 104.59 56.94 7.17 4.61 83.73 36.76 49.84 76.31 71 ER17a ExonRegion 0 66.45 51.51 32.73 49.77 192.63 52.19 67.63 180.99 241.28 67.86 59.47 40.49 33.58 68.71 33.95 113.32 59.56 27.87 11.96 65.57 54.67 43.04 30.05 72 E17a_E18a KnownJunction 0 60.08 41.83 31.34 49.44 147.28 41.51 51.18 165.20 212.32 66.08 47.64 6.30 33.60 53.33 13.35 70.67 30.95 24.04 13.37 80.22 33.61 31.17 18.95 73 E18_Aa NovelBoundary 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.85 8.54 0.00 0.00 18.76 0.00 0.00 0.00 0.00 4.39 0.00 0.00 0.00 2.35 0.00 3.67 74 ER18a ExonRegion 0 30.62 39.40 38.09 75.84 113.59 43.95 36.10 162.39 198.34 53.77 45.99 27.49 25.60 59.81 30.49 65.71 47.09 12.93 9.13 77.68 50.10 32.55 28.85 75 E18_Da NovelBoundary 0 7.48 3.35 1.15 3.70 0.00 2.90 8.66 23.66 40.94 6.66 2.53 6.30 12.34 7.95 8.90 8.37 8.42 2.49 0.00 0.00 3.03 0.00 0.00 76 E18a_E19a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 77 E18a_E20a KnownJunction 0 52.90 40.12 40.92 101.55 133.79 47.25 50.83 149.88 189.81 55.55 28.22 31.21 6.82 57.92 35.85 52.89 53.86 12.39 4.80 79.00 31.63 39.25 19.89 78 I18 Intron 0 4.76 7.04 6.78 10.57 33.27 7.69 10.41 54.16 47.12 17.06 4.74 7.52 8.59 6.50 4.91 6.08 6.17 1.81 2.01 11.61 0.78 2.79 1.19 79 I18_SR1 SilentIntronRegion 0 0.95 0.90 1.34 1.49 10.11 0.53 6.96 25.60 34.86 5.79 4.76 5.71 8.31 8.75 2.47 9.63 2.63 3.31 2.35 11.65 0.00 0.60 1.70 80 I18_AR1 ActiveIntronRegion 0 0.51 3.19 0.98 3.77 14.13 3.62 7.97 23.61 34.18 10.24 6.70 9.27 11.86 5.99 3.12 6.93 8.48 2.39 2.75 12.46 0.83 1.95 1.15 81 I18_AR2 ActiveIntronRegion 0 5.98 8.72 8.46 12.95 44.27 11.46 12.69 71.54 61.01 23.40 3.09 10.36 9.86 7.89 5.12 5.42 8.88 1.18 0.74 11.93 1.03 5.23 0.92 82 I18_SR3 SilentIntronRegion 0 8.11 10.17 15.49 20.35 55.71 9.39 13.67 106.78 69.22 29.15 4.52 7.01 6.87 6.20 8.36 7.45 3.79 1.95 1.88 18.03 0.67 2.53 1.64 83 I18_AR3 ActiveIntronRegion 0 10.19 13.07 12.13 18.76 47.73 10.13 12.59 70.31 46.19 19.23 6.55 2.48 4.81 3.84 6.59 5.08 2.52 0.98 3.76 10.42 0.97 0.92 1.25 84 E19_Aa NovelBoundary 0 14.52 0.00 7.10 24.07 31.83 5.56 12.54 93.44 49.45 20.42 7.95 0.00 0.00 7.42 0.00 0.00 7.11 1.58 0.00 17.32 0.00 0.00 0.00 85 ER19a ExonRegion 0 5.47 15.06 2.36 9.09 19.02 4.16 9.40 38.20 25.43 5.54 5.05 3.29 3.74 4.46 6.34 3.84 4.26 0.60 0.00 7.55 1.45 0.67 0.95 86 E19_Da NovelBoundary 1 0.00 6.71 4.94 6.79 54.50 2.90 17.14 30.44 17.30 10.64 0.00 18.91 19.48 7.48 4.45 4.27 3.93 0.00 0.00 12.53 0.00 0.00 0.00 87 E20_Aa NovelBoundary 0 6.82 5.92 3.61 15.82 55.18 2.50 12.23 40.91 24.25 11.82 0.00 6.30 0.00 4.59 0.00 4.36 13.09 0.00 0.00 2.75 3.09 2.45 0.00 88 ER20a ExonRegion 0 62.14 60.46 70.06 94.77 180.26 46.57 53.03 234.03 219.86 77.45 31.86 36.89 17.07 41.49 47.02 41.29 37.31 13.80 10.80 67.25 21.58 40.28 21.35 89 E20_Da KnownBoundary 0 86.76 72.88 133.58 117.63 187.61 80.29 69.16 365.35 312.32 99.58 57.23 12.30 13.64 35.38 57.11 53.75 30.20 22.68 8.75 122.40 35.65 40.05 24.16 90 ER20b ExonRegion 0 39.00 35.05 59.17 62.23 74.70 21.66 23.99 238.79 180.64 60.42 21.12 29.73 14.28 17.37 34.01 18.85 17.10 6.50 5.00 45.70 8.06 41.40 8.88