Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-166O4.4 Gene 0 11.18 13.07 7.56 13.92 12.61 9.68 12.86 11.77 5.52 4.64 10.76 19.90 20.69 15.23 10.63 15.71 10.37 9.44 5.45 14.89 7.23 1.79 7.13 2 458327 Transcript 0 9.16 10.16 3.14 5.84 7.94 5.13 7.77 4.03 2.56 1.65 6.33 22.21 19.37 10.01 6.93 7.99 9.03 3.52 2.71 9.16 6.31 1.22 3.76 3 ER1a ExonRegion 0 7.69 7.99 10.43 20.87 11.61 10.78 12.40 18.25 7.57 7.04 11.00 13.73 4.69 15.58 9.45 19.06 8.47 14.16 6.44 14.64 6.99 1.43 8.06 4 E1_Da NovelBoundary 0 34.52 8.35 20.84 44.22 24.19 21.52 38.82 20.78 7.75 5.32 8.84 6.30 0.00 10.07 0.00 15.55 34.03 34.49 12.33 9.40 5.50 5.88 3.67 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 I1 Intron 0 16.21 19.95 18.00 70.64 39.51 29.00 45.45 25.78 19.16 8.55 15.96 35.05 50.67 20.37 8.32 12.35 12.23 10.73 11.64 36.96 2.98 6.57 8.38 7 I1_SR1 SilentIntronRegion 0 16.24 19.99 18.04 70.78 39.59 29.06 45.54 25.83 19.19 8.57 15.99 35.12 50.77 20.41 8.34 12.37 12.25 10.76 11.66 37.03 2.98 6.58 8.39 8 E2_Aa NovelBoundary 0 7.19 30.39 29.42 103.62 36.42 33.28 44.21 48.84 22.37 19.18 14.37 17.86 66.72 22.43 14.59 3.33 15.90 4.68 16.38 44.87 5.81 10.90 8.71 9 ER2a ExonRegion 0 20.45 19.78 0.45 2.22 10.92 1.95 7.88 0.17 0.44 0.09 9.63 29.61 29.58 19.57 12.45 14.57 20.02 3.43 0.36 19.11 9.95 1.71 2.42 10 E2_Da NovelBoundary 1 3.19 29.67 22.26 126.16 36.84 11.30 51.58 79.48 43.14 41.72 17.53 67.22 118.82 29.25 5.56 27.86 9.16 9.49 31.91 53.05 8.46 11.14 4.01 11 E2a_E3a KnownJunction 1 3.63 0.00 0.00 3.63 0.00 0.00 0.00 0.00 1.22 0.00 0.00 37.06 0.00 4.47 0.00 0.00 8.70 0.00 0.00 0.00 8.96 0.00 0.00 12 I2 Intron 0 15.53 46.68 27.01 77.14 44.64 24.52 43.24 35.36 24.83 15.57 15.78 35.11 70.36 14.72 7.73 11.25 6.64 7.95 9.05 30.97 0.78 8.14 9.03 13 I2_SR1 SilentIntronRegion 0 17.23 50.33 30.25 82.90 47.86 26.77 46.74 37.86 26.41 16.93 15.99 36.26 73.30 16.07 8.29 11.73 6.02 8.69 9.77 32.88 0.90 8.45 9.31 14 I2_AR1 ActiveIntronRegion 0 4.31 23.08 5.51 39.93 23.93 9.78 20.52 19.30 14.78 6.73 14.89 28.30 52.46 5.89 4.19 8.37 11.19 3.15 4.42 18.75 0.00 6.29 7.40 15 E3_Aa NovelBoundary 0 20.89 51.83 48.76 122.23 73.51 20.39 48.67 62.64 40.19 16.79 34.48 30.61 40.91 22.01 8.90 24.01 36.19 26.45 30.31 13.81 0.00 3.12 7.00 16 ER3a ExonRegion 1 14.02 23.05 4.80 2.48 17.17 12.94 18.57 1.73 3.57 1.13 11.01 30.67 62.60 10.42 12.73 6.32 7.98 0.00 6.77 12.06 5.66 2.95 8.32 17 IG15 Intergenic 0 9.64 22.53 19.60 46.47 29.81 15.48 22.62 27.71 16.12 16.45 5.77 13.50 16.12 5.60 4.89 4.57 3.42 8.47 9.14 15.86 0.84 2.97 3.96 18 IG15_AR9 ActiveIntergenicRegion 0 10.09 16.03 33.53 57.67 15.67 7.93 18.93 31.13 11.83 9.73 11.76 12.73 31.16 6.64 7.60 7.21 5.74 5.17 4.10 12.89 0.00 8.07 3.49 19 IG15_AR8 ActiveIntergenicRegion 0 19.05 9.53 20.53 43.64 19.54 7.08 20.04 15.20 12.75 7.18 3.43 15.58 21.12 10.64 6.03 5.08 2.13 5.66 1.86 9.28 0.71 4.31 2.71 20 IG15_SR6 SilentIntergenicRegion 0 5.85 11.56 22.14 52.76 19.63 7.15 22.86 30.58 13.72 9.90 9.57 13.03 21.16 8.23 5.00 3.17 3.45 4.79 7.93 12.95 1.24 4.02 4.03 21 IG15_AR6 ActiveIntergenicRegion 0 8.88 26.89 30.66 63.09 20.22 15.01 49.74 27.03 16.22 10.04 16.63 25.28 23.45 17.08 8.45 13.10 11.08 14.48 16.71 39.74 3.24 3.94 8.63 22 IG15_AR4 ActiveIntergenicRegion 0 9.98 23.99 21.11 66.53 39.50 19.97 24.60 43.59 30.16 34.16 7.36 9.19 7.49 5.41 5.92 2.79 6.20 10.14 10.49 21.43 1.15 2.95 4.26 23 IG15_SR3 SilentIntergenicRegion 0 9.25 23.12 12.77 24.65 23.74 19.09 21.03 15.90 11.99 8.91 1.32 4.91 7.20 2.62 1.16 1.35 0.50 8.71 5.05 8.21 0.33 2.35 4.95 24 IG15_AR2 ActiveIntergenicRegion 0 14.15 40.63 36.40 71.58 62.35 37.24 36.85 62.69 32.84 39.54 5.37 21.35 17.45 6.06 4.31 7.19 7.39 10.55 14.84 24.42 1.64 4.60 4.03 25 IG15_SR2 SilentIntergenicRegion 0 19.70 44.77 24.97 62.03 60.93 29.17 26.40 39.54 25.95 28.94 3.71 18.80 13.84 3.14 5.08 4.67 1.78 12.31 11.34 19.73 0.65 2.45 2.98 26 IG15_AR1 ActiveIntergenicRegion 0 11.13 45.22 19.94 48.72 42.78 27.17 33.93 26.85 18.38 18.69 4.43 16.73 31.84 6.90 11.03 9.27 3.94 23.84 18.22 29.00 0.40 1.41 6.89 27 IG15_SR1 SilentIntergenicRegion 0 3.67 14.92 7.23 24.38 18.32 10.68 11.60 10.31 7.62 13.22 2.41 10.63 8.50 1.66 3.01 3.44 1.61 5.52 8.92 9.84 0.49 1.39 3.92