Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GS1-124K5.9 Gene 0 22.39 11.61 11.75 15.21 24.53 18.70 19.18 16.36 24.70 14.34 19.98 43.15 50.77 33.50 35.94 40.31 38.51 13.54 21.48 16.24 20.98 9.57 11.37 2 429320 Transcript 0 22.51 7.19 12.67 20.45 25.00 20.97 10.55 26.40 39.85 19.27 26.71 53.80 73.39 41.80 46.60 48.31 51.27 19.32 26.98 18.64 20.40 8.17 7.56 3 442578 Transcript 0 17.68 10.36 11.33 12.67 26.25 18.19 16.28 18.77 23.33 16.12 15.89 32.98 31.28 25.77 26.71 36.17 25.91 14.44 15.92 12.34 19.27 8.13 9.15 4 411606 Transcript 0 7.18 3.28 1.74 3.48 4.17 3.45 4.56 2.36 3.30 1.61 2.39 6.83 8.93 2.94 5.61 7.77 8.35 2.08 3.48 4.11 4.27 3.10 3.74 5 ER1a ExonRegion 0 18.89 3.37 8.95 9.05 32.15 30.09 19.01 17.94 39.74 13.58 32.08 62.14 103.95 47.71 60.40 56.18 63.64 16.16 39.66 19.65 15.05 6.34 6.23 6 E1_Da NovelBoundary 0 0.00 3.22 42.84 61.93 4.24 0.00 6.67 44.77 44.36 57.54 2.63 0.00 0.00 4.53 12.49 4.27 4.30 47.84 9.60 3.07 0.00 2.33 8.71 7 E1a_E2a KnownJunction 1 21.19 6.58 6.09 7.33 4.16 2.21 2.25 21.28 31.34 8.57 24.95 32.11 106.81 37.02 47.35 22.99 43.95 18.28 8.38 12.78 17.24 2.76 0.00 8 E1a_E3a NovelJunction 0 3.33 2.83 3.46 0.00 4.33 5.79 3.97 4.39 7.64 8.11 2.47 6.90 27.27 10.71 18.17 4.36 11.78 0.00 9.60 2.75 5.93 2.57 0.00 9 E1a_E4a NovelJunction 0 0.00 0.00 0.00 1.37 0.00 0.00 3.97 0.00 6.08 6.10 7.32 0.00 6.82 2.83 0.00 16.49 4.77 7.38 0.00 0.00 3.09 3.12 0.00 10 ER2a ExonRegion 0 22.68 6.89 5.98 10.46 23.32 24.36 10.54 20.88 30.55 18.21 28.40 49.13 65.47 41.66 61.16 34.09 56.18 24.21 29.32 23.84 22.40 14.03 7.67 11 E2_Ab KnownBoundary 0 187.89 59.66 35.92 44.15 102.12 57.64 121.40 61.32 64.99 45.72 55.96 110.89 102.10 74.75 139.44 140.48 101.92 57.66 110.21 123.36 60.36 40.05 64.45 12 ER2b ExonRegion 0 26.38 6.25 9.65 12.03 26.63 16.59 16.31 19.52 24.88 19.83 18.34 62.51 68.06 43.18 63.26 56.40 44.68 16.04 20.43 26.47 19.51 13.92 6.37 13 E2_Da NovelBoundary 0 8.67 0.00 1.77 5.86 14.77 0.00 16.61 2.55 9.69 0.00 0.00 0.00 6.49 7.18 17.80 7.69 3.55 0.00 0.00 3.26 2.47 0.00 3.24 14 E2a_E3a KnownJunction 1 38.30 0.00 13.90 9.86 19.86 5.00 8.08 13.72 23.73 14.00 4.16 31.51 73.37 22.60 19.66 44.26 38.24 10.28 8.47 18.34 9.02 6.25 8.37 15 ER3a ExonRegion 0 27.51 3.58 18.88 9.98 23.31 8.14 13.33 17.37 25.71 16.56 33.58 51.88 75.04 35.18 36.09 42.57 59.75 12.25 23.32 16.01 22.71 8.65 6.22 16 E3_Da NovelBoundary 0 0.00 12.30 8.40 9.39 0.00 2.90 3.75 3.61 11.75 2.71 7.84 5.70 15.10 0.00 0.00 4.02 9.07 4.23 3.48 3.26 0.00 0.00 3.59 17 E3a_E4a KnownJunction 0 24.89 6.25 27.53 15.22 40.75 22.88 11.61 23.70 34.84 23.88 50.28 42.91 45.78 45.15 53.77 40.33 52.83 14.43 22.21 21.92 30.27 11.45 16.73 18 ER4a ExonRegion 0 37.09 10.82 20.54 27.23 45.40 26.29 30.70 39.93 60.44 32.09 44.16 97.30 104.06 82.72 83.10 70.37 63.00 23.80 52.53 30.44 27.42 13.21 26.63 19 E4a_E5a KnownJunction 0 17.19 5.79 6.50 42.85 19.27 13.34 12.54 35.20 57.09 21.81 16.69 69.62 29.54 38.73 26.21 41.70 34.32 14.51 30.12 14.76 14.15 6.12 11.87 20 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.73 12.41 6.66 0.00 0.00 0.00 0.00 6.30 0.00 4.77 5.14 0.00 3.26 0.00 0.00 0.00 21 ER5a ExonRegion 0 30.82 14.31 18.45 30.88 45.88 37.08 15.00 37.46 50.48 27.61 36.13 90.92 101.30 67.06 50.85 76.36 57.20 19.32 37.59 23.91 30.61 16.67 11.21 22 E5a_E6a KnownJunction 0 24.30 6.18 30.04 22.14 25.21 18.74 3.97 25.63 29.89 25.84 22.01 18.91 33.28 18.60 33.62 58.53 52.36 23.46 16.85 16.87 22.98 3.12 8.37 23 ER6a ExonRegion 0 26.53 12.32 24.27 24.73 25.21 23.69 21.42 29.68 43.62 25.95 38.28 83.49 78.08 62.18 64.32 71.97 64.82 21.35 27.22 28.07 26.44 6.18 12.75 24 E6a_E7a KnownJunction 0 12.82 10.00 7.81 16.22 36.67 35.83 18.55 26.70 27.66 15.85 20.79 80.73 46.75 56.21 38.69 17.77 53.48 5.47 26.17 8.25 11.31 0.00 7.60 25 E6a_E11a NovelJunction 0 2.89 6.45 3.49 12.69 0.00 7.44 8.04 4.35 28.76 4.22 2.68 25.21 12.01 4.94 8.90 20.34 16.92 2.16 0.00 6.46 17.54 2.33 11.78 26 ER7a ExonRegion 0 21.00 8.95 7.70 12.48 39.28 30.73 14.56 19.70 26.28 12.48 24.74 83.47 54.78 54.77 26.00 32.46 45.29 0.74 24.21 16.26 16.13 8.83 15.27 27 ER7b ExonRegion 0 19.63 8.37 3.62 7.90 39.16 16.63 7.49 10.49 16.31 5.08 17.66 41.62 39.87 40.90 22.16 35.13 13.80 1.81 15.42 11.07 11.07 12.93 13.21 28 E7b_E8a KnownJunction 0 13.85 8.68 2.48 4.63 42.78 7.10 5.48 4.27 4.80 1.40 7.32 12.00 15.10 21.96 18.17 33.41 4.21 2.57 4.33 6.20 2.72 12.49 4.35 29 E7b_E11a NovelJunction 0 2.74 0.00 3.16 3.33 11.71 0.00 3.75 10.80 11.60 14.26 4.69 7.50 0.00 15.01 4.82 11.28 12.25 9.41 12.14 4.92 0.00 3.00 0.00 30 ER8a ExonRegion 1 5.68 4.01 0.71 2.44 20.49 10.71 2.61 8.14 3.71 1.48 5.75 3.76 17.28 16.03 11.15 27.37 3.21 1.60 7.04 2.46 4.29 4.55 7.19 31 E8a_E11a KnownJunction 0 3.33 2.57 0.00 1.47 7.22 11.75 1.99 7.39 3.36 3.22 2.68 6.90 6.82 17.31 8.90 21.70 0.00 0.00 14.40 0.00 8.15 0.00 8.19 32 ER9a ExonRegion 0 5.09 1.09 1.46 2.17 3.57 1.47 6.36 1.38 2.95 1.37 3.61 0.95 8.47 5.69 0.55 7.08 7.05 1.47 1.70 0.57 2.94 1.11 2.35 33 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E10_Aa NovelBoundary 0 37.56 69.92 48.05 89.80 55.26 39.07 137.26 65.76 78.56 55.23 21.69 39.91 19.15 18.89 4.45 26.75 47.03 56.92 56.85 68.97 53.19 10.16 35.43 35 ER10a ExonRegion 1 2.71 2.64 0.11 0.01 0.00 0.79 5.74 1.16 0.00 0.80 0.00 9.43 5.05 1.60 10.60 1.39 2.85 0.00 2.81 0.94 9.60 0.88 0.00 36 E10_Da NovelBoundary 0 101.72 181.68 316.19 332.59 155.18 110.33 288.34 350.73 325.60 316.73 49.80 6.00 37.34 12.77 41.29 88.18 148.76 379.01 119.72 164.84 113.05 34.66 114.64 37 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 I10 Intron 0 9.29 4.65 3.95 6.28 9.43 2.72 8.76 3.18 5.46 3.80 2.03 8.12 16.30 2.21 5.13 3.86 5.10 2.95 3.15 5.26 2.04 2.70 2.00 39 I10_SR1 SilentIntronRegion 0 9.30 4.66 3.96 6.29 9.44 2.72 8.77 3.19 5.47 3.81 2.03 8.13 16.32 2.21 5.13 3.86 5.11 2.96 3.15 5.27 2.05 2.71 2.00 40 ER11a ExonRegion 0 31.52 17.60 12.80 25.17 12.85 20.06 26.89 19.33 30.49 15.38 20.33 44.29 49.44 41.58 41.37 56.45 46.97 17.21 24.73 13.88 31.98 15.09 15.11 41 E11a_E12a KnownJunction 0 24.97 9.60 6.33 14.48 8.32 11.02 6.32 11.62 14.61 4.19 2.58 7.05 0.00 0.00 6.06 28.62 40.67 12.27 4.61 6.07 11.68 14.82 8.37 42 E11a_E14a KnownJunction 1 12.82 5.85 4.97 6.16 7.81 22.83 10.51 20.04 18.92 6.12 25.16 12.60 6.17 9.18 17.06 40.33 7.85 17.53 8.85 3.26 12.11 6.00 11.44 43 E11a_E17a NovelJunction 0 0.00 2.70 1.83 1.93 7.22 2.73 5.92 4.19 5.93 5.61 0.00 7.20 0.00 2.41 8.90 4.36 0.00 2.57 0.00 8.56 11.18 0.00 4.35 44 E12_Aa NovelBoundary 0 3.78 2.70 6.15 13.15 4.33 2.67 9.67 0.00 9.66 0.00 5.37 0.00 32.30 0.00 5.07 11.54 0.00 4.39 7.15 2.88 5.25 0.00 7.26 45 ER12a ExonRegion 0 17.78 9.37 7.82 17.15 19.94 9.51 14.29 8.30 12.89 4.22 11.76 40.98 58.40 15.58 22.19 28.45 29.87 5.82 12.82 14.22 13.41 7.68 8.08 46 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 E12a_E14a NovelJunction 0 30.30 8.68 1.33 17.08 7.81 10.56 3.80 8.13 21.90 1.53 12.16 41.41 13.15 14.19 26.70 31.87 22.53 4.35 17.32 12.02 11.18 3.06 0.00 48 I12_AR1 ActiveIntronRegion 0 6.02 2.59 4.15 5.46 9.90 3.31 9.28 5.60 5.45 3.91 0.98 10.29 15.63 2.09 3.32 3.89 2.10 1.32 2.19 4.55 1.11 1.65 3.48 49 I12 Intron 0 14.33 12.30 7.91 9.35 25.12 2.81 15.06 6.04 5.31 5.55 0.70 6.78 13.30 1.33 9.34 5.37 7.75 4.15 8.05 4.61 0.99 1.88 2.92 50 I12_SR1 SilentIntronRegion 0 14.33 12.30 7.91 9.35 25.12 2.81 15.06 6.04 5.31 5.55 0.70 6.78 13.30 1.33 9.34 5.37 7.75 4.15 8.05 4.61 0.99 1.88 2.92 51 E13_Aa NovelBoundary 0 938.61 696.13 1363.32 1531.71 769.86 545.54 938.90 1586.57 1485.31 1299.29 322.13 221.77 258.59 164.34 206.19 806.71 720.99 1831.41 609.99 912.16 466.79 324.90 739.93 52 ER13a ExonRegion 0 21.26 10.06 1.66 1.03 9.84 11.71 12.85 1.17 2.54 5.48 3.56 9.86 17.38 6.54 16.73 12.13 3.07 1.25 12.86 19.28 5.04 6.55 18.59 53 E13_Da NovelBoundary 0 39.27 20.19 27.73 46.55 44.82 44.97 100.56 28.59 22.14 13.00 12.06 60.17 38.47 13.95 20.52 44.09 33.75 24.08 10.45 57.40 44.67 25.66 33.80 54 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 I13 Intron 0 7.61 9.84 8.15 11.80 22.94 4.95 15.15 7.75 5.22 4.55 0.94 3.13 8.45 1.68 8.23 8.32 4.57 3.75 7.27 7.06 3.43 2.88 3.45 56 I13_SR1 SilentIntronRegion 0 7.59 7.99 8.43 12.46 25.63 5.31 14.05 6.92 5.07 4.36 0.40 3.48 6.37 1.71 7.55 10.45 5.23 5.32 10.10 6.60 5.31 2.15 4.86 57 I13_AR2 ActiveIntronRegion 0 7.56 10.53 9.79 12.70 21.75 4.42 17.50 9.43 6.41 4.73 1.04 3.25 12.54 2.00 9.83 6.11 3.83 2.63 5.41 8.17 1.57 4.65 2.10 58 E14_Aa NovelBoundary 0 24.37 47.69 5.91 29.00 6.79 8.69 4.24 15.85 7.52 6.10 5.00 6.30 6.82 0.00 4.45 0.00 0.00 0.00 3.58 0.00 0.00 5.76 3.41 59 ER14a ExonRegion 0 37.67 20.56 18.49 29.90 44.73 34.32 28.15 24.00 29.09 19.51 27.68 41.74 51.80 34.77 35.46 49.39 50.77 15.80 21.87 17.58 27.55 13.92 17.77 60 E14a_E15a KnownJunction 0 47.42 8.22 32.20 24.24 40.66 24.53 23.98 31.79 36.95 25.22 26.48 76.67 82.62 32.84 55.50 43.66 51.05 25.25 26.73 17.45 13.78 7.53 12.12 61 E14a_E16a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 E15_Aa NovelBoundary 0 6.82 6.18 20.40 18.11 14.94 2.33 22.17 22.34 18.34 12.46 4.90 0.00 7.30 2.47 24.35 8.63 12.90 15.92 16.94 8.82 8.46 3.12 7.85 63 ER15a ExonRegion 0 34.43 19.59 20.13 28.02 42.85 27.32 18.23 28.62 32.02 24.67 28.77 67.08 62.93 33.53 51.08 62.60 56.07 25.49 25.28 24.35 35.29 12.87 22.01 64 E15_Da NovelBoundary 0 2.82 15.39 4.91 8.42 6.88 2.56 18.72 8.17 10.73 7.79 2.47 0.00 0.00 5.89 0.00 8.46 18.05 14.22 0.00 8.37 0.00 0.00 4.35 65 E15a_E16a KnownJunction 0 19.63 16.97 5.47 29.47 30.56 24.93 29.68 5.91 34.11 18.45 20.74 67.37 46.10 29.84 33.13 45.89 43.10 10.94 24.85 15.47 24.59 10.72 7.68 66 I15_AR1 ActiveIntronRegion 0 11.39 24.27 7.55 7.30 14.35 1.48 16.68 0.85 4.44 1.75 3.00 2.68 2.56 0.62 7.02 6.32 8.94 10.43 20.76 12.82 5.11 1.40 2.83 67 E16_Aa NovelBoundary 0 10.45 30.65 8.16 9.16 16.38 7.27 3.97 4.93 2.58 1.53 2.63 0.00 20.45 0.00 0.00 0.00 3.93 5.80 3.86 9.08 2.47 0.00 8.02 68 ER16a ExonRegion 0 34.23 21.75 27.54 21.67 30.28 19.83 23.79 17.40 35.34 21.02 22.98 50.49 48.28 53.77 49.32 57.47 61.03 24.58 31.85 16.97 34.52 18.62 13.69 69 E16_Da NovelBoundary 0 7.56 37.16 13.48 24.34 15.45 2.44 14.93 11.30 6.89 6.82 2.63 0.00 13.15 0.00 11.37 7.26 14.12 14.59 23.72 15.92 11.80 8.02 19.97 70 E16a_E17a KnownJunction 0 25.04 6.45 18.24 11.72 20.46 17.89 11.70 22.88 16.87 30.49 12.48 38.26 26.78 31.49 19.66 47.34 30.39 10.90 14.12 9.01 46.33 0.00 3.41 71 I16_AR1 ActiveIntronRegion 0 8.56 23.07 6.74 13.76 19.30 1.76 20.39 5.95 4.78 7.26 0.00 1.88 7.48 1.22 3.98 2.38 3.46 0.80 3.89 8.75 1.53 3.28 3.08 72 I16_AR2 ActiveIntronRegion 0 2.63 8.69 7.54 8.67 23.92 5.17 14.68 9.74 8.46 2.22 0.00 12.07 15.21 0.00 3.87 3.42 3.00 1.29 0.10 3.87 2.20 0.00 0.80 73 I16_AR3 ActiveIntronRegion 0 6.94 0.65 10.20 9.81 28.68 2.20 24.78 12.10 6.08 4.86 0.00 0.87 15.20 2.53 0.00 6.18 6.60 5.10 3.19 0.94 1.50 0.00 2.94 74 I16 Intron 0 11.27 17.05 5.28 7.88 16.57 3.80 16.78 7.51 5.72 4.53 1.35 4.44 5.05 1.43 6.34 5.94 4.53 4.21 4.76 6.30 2.97 2.21 4.10 75 I16_AR1 ActiveIntronRegion 0 12.70 7.93 11.52 11.31 12.84 5.50 28.73 13.65 11.12 8.72 1.93 0.00 5.16 4.39 17.41 16.64 16.50 14.78 11.47 18.94 14.32 3.96 2.35 76 I16_AR2 ActiveIntronRegion 0 11.49 18.01 15.40 13.63 19.88 2.88 16.83 16.54 10.41 7.54 1.93 2.47 9.38 2.09 9.53 8.92 16.98 15.57 5.46 17.33 10.07 2.08 2.94 77 I16_AR3 ActiveIntronRegion 0 16.48 22.32 8.19 10.84 24.78 6.12 25.99 10.77 8.88 5.03 2.24 3.70 4.00 1.86 7.96 8.97 4.84 7.04 7.73 8.17 2.83 1.36 8.08 78 I16_SR2 SilentIntronRegion 0 18.84 41.93 11.09 12.91 21.55 2.59 15.52 8.37 3.64 4.10 1.64 5.25 4.05 1.61 7.04 3.78 4.20 2.86 4.50 7.51 4.36 3.83 4.56 79 E17_Aa NovelBoundary 0 3.78 6.31 22.26 12.65 11.80 0.00 1.90 8.71 10.76 12.14 2.42 0.00 0.00 2.47 4.57 8.72 0.00 13.27 4.80 8.63 2.59 2.82 6.66 80 ER17a ExonRegion 0 27.06 21.31 18.73 24.87 30.74 27.24 48.72 31.41 45.05 32.06 29.17 58.84 67.63 51.95 56.31 49.58 60.54 32.19 26.53 36.03 43.12 15.37 19.32 81 E17_Da NovelBoundary 0 7.11 5.59 5.47 18.31 24.11 2.90 7.99 1.77 4.31 4.46 0.00 12.15 0.00 0.00 0.00 4.36 9.07 1.99 17.04 12.21 5.87 3.00 16.05 82 E17a_E18a KnownJunction 0 2.82 8.68 24.07 14.88 16.13 15.96 15.77 44.28 50.20 34.52 12.27 5.85 6.49 16.48 16.69 22.99 30.95 32.21 8.47 17.39 15.94 13.59 0.00 83 E18_Aa NovelBoundary 0 6.67 58.28 4.79 10.02 7.89 5.05 41.56 11.91 5.01 6.47 4.47 0.00 13.15 0.00 4.45 0.00 4.77 0.00 4.80 16.94 3.03 5.20 4.35 84 ER18a ExonRegion 0 18.07 24.02 16.70 8.93 42.37 29.56 35.42 16.01 28.55 20.21 18.14 37.73 28.88 33.49 31.09 40.24 30.84 22.06 30.89 14.46 33.10 9.60 10.02