Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF713 Gene 0 10.23 37.37 17.72 30.61 59.70 59.16 38.19 23.12 31.08 29.62 8.99 8.08 9.47 5.53 7.78 9.57 7.77 37.18 30.29 30.74 10.75 5.25 10.40 2 426595 Transcript 0 0.76 4.15 1.31 2.15 2.16 6.37 2.44 2.14 3.71 2.42 1.92 1.32 0.01 0.92 0.19 0.42 1.55 7.73 4.57 1.71 0.88 0.94 1.99 3 322781 Transcript 0 0.00 6.31 1.33 0.00 0.00 5.11 7.82 0.00 0.00 2.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 466630 Transcript 0 5.40 21.68 9.19 16.85 18.11 8.90 19.37 9.57 10.95 10.32 4.42 6.61 8.43 3.07 5.11 4.99 5.08 11.49 7.59 15.80 3.83 1.51 3.97 5 411863 Transcript 0 3.21 6.85 4.41 12.06 10.41 25.43 5.83 5.74 17.20 21.93 5.51 0.00 0.95 1.21 0.00 2.76 1.10 15.60 16.41 16.67 4.95 2.76 0.59 6 484120 Transcript 0 0.03 4.10 0.40 0.44 0.62 0.71 2.12 4.33 1.98 0.94 0.06 2.80 0.00 0.05 0.00 0.18 5.18 3.81 0.20 4.55 2.27 0.06 0.05 7 482436 Transcript 0 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 1.24 1.58 9.69 18.91 6.66 5.30 0.00 3.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 429591 Transcript 0 13.16 33.85 17.42 28.84 74.35 67.31 44.37 21.03 28.73 25.65 7.63 9.75 11.40 9.12 15.53 13.27 11.53 29.43 34.56 28.26 10.61 6.48 16.21 9 395482 Transcript 0 1.32 8.13 4.75 5.28 5.35 6.42 6.45 6.27 7.26 7.88 2.66 1.08 4.10 1.02 0.00 4.09 0.41 15.94 7.96 11.70 4.13 0.78 2.57 10 ER1a ExonRegion 0 0.00 0.58 0.71 1.94 0.00 2.08 0.38 2.92 1.04 0.97 1.64 1.01 0.00 0.10 1.16 2.53 0.00 12.23 3.61 10.24 1.81 0.00 0.00 11 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.24 0.00 0.00 0.00 12 E1_Ac KnownBoundary 0 0.00 0.00 6.56 2.00 0.00 2.61 0.00 0.00 0.00 2.28 5.21 0.00 0.00 0.00 0.00 0.00 0.00 4.60 3.86 22.18 0.00 0.00 0.00 13 ER1b ExonRegion 0 0.00 0.20 2.45 1.50 0.00 2.20 0.00 1.04 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 1.02 3.03 12.02 0.55 0.00 0.00 14 ER1c ExonRegion 0 0.00 3.78 2.42 2.65 0.00 17.98 3.24 2.16 1.24 0.00 2.15 0.00 0.00 1.53 0.00 0.74 2.93 9.50 10.00 14.48 1.59 0.00 0.00 15 E1_Ad KnownBoundary 0 0.00 6.31 0.00 2.06 0.00 32.14 6.62 2.42 4.40 0.00 7.21 0.00 0.00 2.47 0.00 3.33 4.77 46.93 12.14 8.82 3.15 2.33 0.00 16 ER1d ExonRegion 0 0.01 7.27 1.06 1.59 1.78 11.08 5.00 3.47 1.62 1.29 2.76 1.08 0.00 0.77 0.62 3.59 2.38 10.99 2.81 3.52 3.45 0.53 0.09 17 E1a_E2b KnownJunction 0 0.00 50.25 9.61 5.66 19.61 30.55 18.15 8.79 11.40 5.88 4.95 0.00 0.00 5.12 0.00 6.84 13.37 36.85 14.02 9.08 13.78 5.27 0.00 18 E2_Aa NovelBoundary 0 3.33 3.03 17.30 21.58 3.90 0.00 3.71 22.18 13.89 13.57 0.00 0.00 0.00 0.00 0.00 3.93 0.00 47.30 0.00 3.26 0.00 0.00 0.00 19 ER2a ExonRegion 0 0.03 4.10 0.40 0.44 0.62 0.71 2.12 4.33 1.98 0.94 0.06 2.80 0.00 0.05 0.00 0.18 5.18 3.81 0.20 4.55 2.27 0.06 0.05 20 E2_Ab KnownBoundary 0 0.00 5.72 1.36 1.53 0.00 0.00 4.24 9.90 3.47 2.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.01 0.00 5.62 2.53 0.00 0.00 21 ER2b ExonRegion 0 5.14 59.33 16.12 17.00 37.97 52.10 19.58 28.27 34.46 25.01 10.40 4.33 1.56 2.99 1.63 12.95 7.49 82.64 32.81 38.92 14.59 1.01 8.18 22 E2a_E3a KnownJunction 0 10.30 31.84 14.22 20.01 47.54 76.66 15.63 34.75 31.63 37.12 16.16 0.00 0.00 0.00 0.00 0.00 16.64 40.09 38.12 40.72 20.32 0.00 0.00 23 E3_Aa NovelBoundary 0 0.00 20.00 6.33 6.53 3.90 7.27 4.50 2.55 1.79 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 4.93 0.00 3.26 0.00 0.00 4.01 24 ER3a ExonRegion 0 4.73 59.49 26.38 41.20 63.66 71.86 38.79 44.53 57.54 50.69 18.56 5.65 11.13 4.35 4.07 14.40 6.44 85.16 45.33 56.53 29.49 6.80 12.88 25 E3_Da KnownBoundary 0 20.67 103.53 29.57 32.40 50.93 66.78 40.85 38.53 73.81 65.17 24.53 0.00 20.45 0.00 6.30 16.24 4.77 122.41 79.63 74.02 38.05 14.88 11.95 26 ER3b ExonRegion 0 10.21 70.48 28.66 37.51 69.37 75.88 50.98 34.57 79.61 62.05 34.65 9.65 10.92 6.04 1.21 28.86 10.15 144.50 52.01 60.52 36.68 13.87 15.43 27 E3_Ab KnownBoundary 0 19.26 110.97 35.92 58.83 97.71 77.11 70.17 36.60 82.61 58.21 38.43 11.10 27.92 14.48 0.00 29.56 17.77 156.28 46.21 95.56 32.56 11.21 10.41 28 ER3c ExonRegion 0 20.33 67.62 27.75 55.70 111.96 152.35 64.67 43.58 68.48 58.79 29.27 8.83 16.29 8.40 2.75 16.50 9.82 141.79 67.69 70.13 38.10 8.77 19.67 29 E3_Db NovelBoundary 0 3.70 19.27 1.63 6.19 0.00 13.06 13.25 4.19 6.13 4.62 0.00 0.00 6.49 0.00 0.00 3.85 4.77 23.67 18.92 16.04 4.70 0.00 0.00 30 E3b_E4a KnownJunction 0 3.63 53.94 33.65 53.24 120.12 140.83 93.40 39.39 43.46 50.31 30.32 6.30 0.00 4.94 4.45 16.41 4.77 97.83 53.18 65.26 29.71 14.70 7.00 31 E3b_E4c KnownJunction 0 3.78 21.25 7.16 8.66 7.72 35.83 13.12 9.04 17.71 6.58 9.90 6.90 0.00 5.42 0.00 0.00 9.26 34.16 23.81 0.00 3.15 5.63 11.95 32 ER4a ExonRegion 0 2.65 46.77 28.80 47.36 87.63 121.03 70.50 36.73 44.16 49.89 30.93 4.33 0.00 4.87 2.90 11.89 10.73 91.00 52.56 55.85 27.55 8.33 2.94 33 E4_Ac KnownBoundary 0 7.11 57.36 45.15 57.40 68.85 139.29 58.43 50.85 61.54 49.91 18.06 11.70 0.00 5.06 0.00 14.44 12.90 106.41 61.55 56.12 14.76 2.45 16.65 34 ER4b ExonRegion 0 3.28 52.17 33.09 48.64 66.25 119.83 65.10 35.58 52.68 49.12 28.06 8.06 0.00 4.76 1.30 11.79 10.13 100.35 61.95 55.61 24.47 7.18 10.33 35 ER4c ExonRegion 0 9.07 71.94 43.11 56.68 47.06 106.66 50.00 52.38 71.48 59.99 21.85 9.05 26.47 10.70 5.65 23.88 10.02 156.20 65.30 75.68 26.13 14.51 27.64 36 E4a_E5a KnownJunction 0 0.00 2.83 6.71 14.08 0.00 30.04 2.16 6.74 19.39 23.56 2.26 0.00 0.00 2.47 0.00 0.00 0.00 12.85 18.54 8.88 5.13 4.96 0.00 37 E4a_E6b KnownJunction 0 14.22 94.39 43.49 39.79 47.20 50.77 57.15 50.07 48.29 45.45 10.53 6.15 25.97 9.42 0.00 33.07 4.77 151.35 62.12 74.08 22.67 5.57 16.30 38 E5_Aa NovelBoundary 0 0.00 24.67 3.40 5.13 4.33 0.00 7.95 6.49 16.03 7.25 2.68 0.00 0.00 0.00 0.00 0.00 8.32 10.53 0.00 8.18 5.87 2.33 0.00 39 ER5a ExonRegion 0 6.06 17.73 6.50 15.07 22.66 36.25 11.39 8.05 20.77 28.65 8.89 0.00 2.86 1.15 0.00 4.61 3.29 27.28 18.64 20.69 6.58 3.33 1.76 40 E5_Da NovelBoundary 0 0.00 12.30 6.59 7.26 3.57 2.27 5.26 2.55 8.94 5.53 2.53 0.00 0.00 0.00 0.00 0.00 0.00 16.75 0.00 5.75 0.00 0.00 0.00 41 E5a_E6b KnownJunction 0 3.56 0.00 0.00 7.03 8.57 9.99 3.93 2.42 11.43 13.59 5.37 0.00 0.00 0.00 0.00 3.67 0.00 6.67 12.05 20.45 3.15 0.00 0.00 42 ER6a ExonRegion 0 2.65 16.27 9.50 10.56 10.70 12.84 12.91 12.53 14.51 15.77 5.32 2.16 8.21 2.03 0.00 8.17 0.83 31.87 15.93 23.40 8.26 1.56 5.14 43 ER6b ExonRegion 0 11.09 94.00 39.44 54.96 73.50 77.81 55.88 50.34 64.12 80.29 36.56 9.62 9.38 8.65 4.14 24.20 10.90 121.50 69.07 73.12 37.94 6.81 19.20 44 E6_Da KnownBoundary 0 0.00 12.56 5.38 15.28 12.31 16.64 6.23 7.56 4.86 7.47 2.58 0.00 0.00 0.00 0.00 0.00 3.93 18.78 3.95 6.33 5.87 0.00 0.00 45 E6a_E6c KnownJunction 0 20.30 99.78 33.74 43.38 155.35 147.98 104.71 39.68 52.72 56.09 37.75 18.91 34.90 16.19 0.00 11.96 13.93 121.38 67.20 54.01 22.92 2.51 15.96 46 ER6c ExonRegion 0 1.27 4.32 3.68 12.39 12.47 6.94 6.62 6.06 2.45 1.71 0.98 0.00 0.00 0.00 0.00 2.33 4.62 14.64 4.07 12.18 4.51 0.00 3.39 47 E6_Db KnownBoundary 0 3.19 5.53 1.30 5.99 16.81 10.96 6.58 4.68 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.69 9.04 11.63 3.15 0.00 13.06 48 ER6d ExonRegion 0 0.60 10.31 0.79 8.34 8.73 4.76 5.74 2.14 1.71 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.38 4.47 10.74 2.78 0.00 5.45 49 E6_Dc KnownBoundary 0 0.00 2.96 1.30 8.49 0.00 0.00 8.17 0.00 1.36 4.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 6.46 3.15 0.00 0.00 50 E6c_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 ER6e ExonRegion 0 0.15 5.86 2.83 7.89 4.87 4.12 4.78 3.10 3.55 3.94 0.17 0.08 0.15 0.05 0.00 0.76 1.65 5.15 1.82 10.03 3.41 0.01 2.19 52 E6_Ac KnownBoundary 0 0.00 5.53 7.07 16.91 8.32 0.00 6.09 2.14 6.45 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 12.59 2.72 0.00 0.00 53 ER6f ExonRegion 0 16.91 111.89 57.58 67.34 128.90 182.50 74.36 51.53 71.88 91.40 31.22 11.44 24.88 9.44 5.39 21.22 12.13 132.82 69.04 75.30 36.58 5.32 15.45 54 E6_Dd KnownBoundary 0 0.00 9.41 7.92 15.52 6.45 15.50 21.95 13.68 12.07 9.72 17.06 6.30 0.00 2.47 0.00 7.18 3.65 16.13 0.00 27.04 5.19 0.00 3.76 55 E6d_E6d KnownJunction 0 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 1.24 1.58 9.69 18.91 6.66 5.30 0.00 3.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 E6d_E7a KnownJunction 0 32.01 106.43 54.52 83.54 184.64 281.03 124.94 62.47 79.98 99.82 14.95 0.00 6.82 6.83 4.45 20.68 7.29 126.02 60.43 86.29 52.57 12.06 19.80 57 E6d_E8a KnownJunction 0 0.00 0.00 0.00 1.43 4.33 0.00 0.00 0.00 3.01 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 ER6g ExonRegion 0 5.57 34.47 14.18 27.28 31.26 12.80 28.24 16.42 16.43 16.91 4.73 3.74 9.67 2.03 2.47 3.77 5.46 11.12 8.70 17.06 1.56 1.51 2.55 59 E6_Ad KnownBoundary 0 35.56 60.06 16.38 41.55 15.96 10.16 37.14 29.98 21.56 15.02 4.58 6.30 0.00 2.30 0.00 3.93 0.00 38.47 34.64 44.81 5.99 0.00 4.10 60 ER6h ExonRegion 0 6.89 28.23 12.21 24.74 41.24 14.46 31.83 18.45 16.01 11.86 13.78 6.38 13.35 4.05 0.70 7.03 5.52 24.50 18.45 26.77 6.10 2.03 1.14 61 E6_De KnownBoundary 0 0.00 30.85 13.28 30.70 23.94 15.50 36.70 28.51 19.73 9.59 6.84 12.90 13.64 7.18 0.00 23.93 0.00 38.10 19.77 39.37 6.30 2.33 3.84 62 ER6i ExonRegion 0 10.47 24.71 10.58 15.39 18.18 9.80 25.09 9.20 12.89 10.12 8.35 15.99 15.48 7.13 12.86 10.44 8.15 18.21 12.26 20.30 6.53 3.02 7.18 63 E6_Df NovelBoundary 0 3.78 45.98 1.69 22.24 58.91 29.41 12.76 12.77 4.66 4.41 11.63 5.25 0.00 8.83 0.00 8.72 8.70 6.05 12.89 11.12 0.00 2.94 3.59 64 E6f_E7c NovelJunction 0 1041.07 528.92 342.00 304.09 597.20 377.79 600.75 389.14 286.77 295.24 112.03 125.29 306.47 97.77 166.14 360.93 330.90 262.90 252.90 325.91 150.43 291.84 322.42 65 I6 Intron 0 3.38 14.76 6.00 18.49 15.44 7.67 11.41 8.06 8.20 7.93 3.99 2.92 3.30 1.00 0.52 2.81 2.09 11.29 7.11 9.66 2.28 0.81 1.97 66 I6_SR1 SilentIntronRegion 0 5.68 20.87 7.71 24.18 24.97 11.27 18.77 10.83 11.34 12.19 8.01 6.61 7.09 2.22 1.10 5.27 4.30 19.75 12.19 13.59 3.91 1.05 3.11 67 I6_AR2 ActiveIntronRegion 0 9.66 28.00 20.51 53.45 30.29 12.31 21.65 17.99 16.90 16.09 12.36 2.91 7.16 2.53 0.78 5.57 3.84 20.10 12.93 13.26 2.52 2.84 5.22 68 I6_AR3 ActiveIntronRegion 0 1.29 6.20 3.65 19.75 10.34 12.12 8.36 6.85 12.58 5.46 1.35 4.27 0.51 0.36 0.00 2.53 0.00 2.66 3.12 12.56 0.88 0.54 1.55 69 E7_Aa NovelBoundary 0 2.82 5.59 9.93 25.87 23.51 17.72 16.30 10.84 11.81 6.15 2.68 0.00 6.82 2.47 4.45 0.00 0.00 8.66 8.19 12.46 0.00 0.00 0.00 70 ER7a ExonRegion 0 14.90 90.95 36.22 76.86 143.63 132.65 65.38 54.44 75.50 77.49 12.76 6.94 6.47 4.82 0.35 5.57 10.57 66.24 56.52 58.58 12.45 5.30 9.35 71 E7_Ab KnownBoundary 0 10.22 37.95 33.26 75.95 58.15 126.29 81.48 36.35 65.97 84.21 10.27 0.00 13.64 0.00 0.00 0.00 4.77 53.64 46.68 52.48 3.03 0.00 11.95 72 ER7b ExonRegion 0 15.37 58.01 32.25 65.18 146.61 146.40 86.64 43.71 62.01 57.82 9.10 9.65 7.75 3.16 0.99 5.36 5.09 51.16 58.79 47.19 12.34 5.84 8.74 73 E7_Da KnownBoundary 0 28.23 74.33 19.57 65.19 285.91 194.66 100.78 48.47 64.09 35.75 20.64 0.00 0.00 6.71 0.00 0.00 4.68 25.83 40.00 32.85 6.18 7.90 3.33 74 ER7c ExonRegion 0 10.98 40.90 24.39 41.62 96.17 87.64 47.75 32.64 40.44 31.46 9.96 12.47 9.58 3.63 5.83 3.18 2.21 37.44 43.32 30.62 6.59 12.74 9.77 75 E7_Db KnownBoundary 0 208.41 326.39 299.22 360.49 262.39 255.99 395.70 312.33 295.69 290.38 157.93 147.95 118.50 110.07 161.07 231.05 196.91 336.93 220.43 370.72 157.47 113.71 213.92 76 E7b_E7c KnownJunction 0 0.00 6.31 1.33 0.00 0.00 5.11 7.82 0.00 0.00 2.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 77 ER7d ExonRegion 0 20.05 32.36 12.17 16.65 36.59 38.08 40.73 13.16 17.11 17.46 8.82 18.08 20.87 15.83 29.16 21.52 18.97 29.41 37.51 36.10 15.97 10.51 27.93 78 E7_Ac KnownBoundary 0 293.83 346.78 187.37 178.63 274.70 357.29 483.63 167.99 123.49 162.97 123.93 205.27 328.87 119.02 76.40 297.19 238.62 167.47 223.35 368.48 194.54 100.55 212.81 79 ER7e ExonRegion 0 15.45 42.70 37.28 65.76 145.95 150.85 67.33 51.19 66.41 60.68 3.92 4.42 3.70 0.52 2.17 6.03 3.62 29.41 33.65 26.23 2.94 8.98 6.21 80 E7_Dc KnownBoundary 0 3.41 67.29 35.01 48.75 202.80 150.94 117.25 33.64 52.17 29.82 7.16 6.30 6.82 2.47 5.19 0.00 0.00 34.95 28.71 20.39 2.72 16.84 8.19 81 ER7f ExonRegion 0 6.27 35.34 22.66 41.03 112.10 96.53 48.02 28.91 40.34 33.85 6.44 1.42 1.93 2.40 1.90 5.02 4.10 29.45 31.61 20.42 5.25 2.44 4.50 82 E7_Dd NovelBoundary 0 0.00 18.15 14.49 21.68 73.34 47.98 33.21 11.01 37.35 23.50 7.42 0.00 6.82 2.35 0.00 4.36 0.00 44.73 36.33 34.32 2.47 2.82 0.00 83 I7 Intron 0 8.79 40.70 21.22 36.98 84.65 47.82 18.73 24.64 26.51 23.44 1.60 1.13 0.49 0.69 0.68 2.36 1.07 13.78 21.22 15.21 2.82 1.96 2.39 84 I7_SR2 SilentIntronRegion 0 4.87 11.47 1.60 1.88 66.09 47.29 12.10 0.42 2.07 1.22 0.80 1.48 0.00 1.66 1.84 1.23 1.37 8.89 13.60 11.68 1.15 1.37 1.41 85 I7_AR2 ActiveIntronRegion 0 17.78 93.71 38.94 78.31 972.23 241.60 70.06 50.01 60.21 44.81 2.12 0.54 2.74 0.68 1.69 6.52 2.34 103.91 96.14 43.14 17.94 6.83 16.07 86 I7_AR3 ActiveIntronRegion 0 9.51 106.28 42.92 70.55 141.23 102.08 42.84 46.75 49.29 41.67 3.77 3.49 1.23 1.54 1.44 4.66 2.78 31.87 60.25 29.46 5.87 3.91 6.19 87 I7_SR3 SilentIntronRegion 0 3.13 4.51 0.00 0.00 5.93 20.33 6.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 6.29 0.00 1.54 0.00 88 I7_AR4 ActiveIntronRegion 0 23.22 70.40 47.67 83.86 117.48 80.09 30.57 55.13 58.11 56.44 3.20 1.48 0.80 1.20 1.02 4.10 1.82 19.56 26.56 30.26 5.02 3.88 3.04 89 ER8a ExonRegion 0 0.77 2.16 0.00 0.86 0.48 0.00 0.96 0.86 0.52 1.79 0.00 0.00 0.07 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 90 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 91 ER9a ExonRegion 0 0.00 0.94 0.00 0.00 0.41 0.28 0.20 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00