Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	STAG3L3	Gene	0	69.47	25.19	79.63	60.31	64.67	76.02	82.25	42.22	28.16	26.14	37.17	37.88	50.21	58.49	78.06	98.96	50.49	55.99	41.51	29.18	26.09	16.27	40.23
2	423834	Transcript	0	0.24	0.00	2.39	1.89	0.73	0.75	0.86	0.61	0.49	1.97	1.47	0.00	0.00	0.75	0.60	2.61	1.08	2.49	0.00	0.74	0.68	0.11	0.70
3	428423	Transcript	0	55.38	34.17	113.37	74.86	59.08	61.05	68.49	52.56	45.81	39.97	55.36	82.00	111.60	134.13	196.28	155.01	92.09	137.14	93.03	82.34	30.41	32.05	77.36
4	434644	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	426587	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	308103	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	448173	Transcript	0	179.42	54.53	132.11	91.05	88.94	79.30	129.05	59.57	37.46	32.19	66.33	58.32	72.37	87.19	105.26	176.91	92.83	75.31	59.20	38.63	45.73	25.19	76.10
8	436857	Transcript	0	5.08	5.09	41.12	37.63	25.37	26.17	9.88	56.85	31.98	29.57	10.91	4.38	5.63	7.99	16.79	17.72	12.45	18.72	14.81	5.28	17.95	4.23	7.77
9	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER1b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER1c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER1d	ExonRegion	0	0.56	0.53	6.98	3.91	0.17	0.00	0.13	1.10	2.10	3.13	3.86	0.00	0.00	1.41	0.54	1.98	3.28	1.85	0.84	0.68	1.43	0.59	0.85
13	E1_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER1e	ExonRegion	0	0.91	0.00	16.37	8.81	9.17	4.00	5.15	3.46	6.18	7.82	21.75	0.00	0.00	10.03	4.25	21.76	18.63	21.18	0.00	9.27	10.00	2.08	8.29
16	ER1f	ExonRegion	0	0.71	0.00	7.17	5.66	2.20	2.24	2.59	1.83	1.46	5.91	4.41	0.00	0.00	2.25	1.81	7.82	3.24	7.47	0.00	2.22	2.03	0.34	2.11
17	E1b_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER2a	ExonRegion	0	0.00	0.78	2.54	3.50	0.00	0.00	0.00	0.00	0.00	4.52	4.59	0.00	0.00	4.46	2.77	8.57	3.65	0.24	0.00	2.52	2.51	0.00	1.23
19	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER3a	ExonRegion	0	21.31	7.73	6.10	7.87	8.10	3.39	10.86	4.23	0.78	1.34	4.08	0.22	5.05	1.53	1.51	5.82	3.92	8.80	1.17	2.73	1.28	2.37	4.94
21	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER4a	ExonRegion	0	1.11	1.43	0.00	1.25	0.00	1.85	1.56	0.28	0.44	1.23	0.02	0.00	0.00	0.00	0.00	1.17	0.00	0.33	0.00	0.00	0.00	0.00	0.00
24	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER5a	ExonRegion	0	18.81	4.27	9.63	7.78	1.57	7.34	12.77	2.43	3.53	3.59	6.52	1.49	0.28	2.95	1.03	0.90	2.40	4.83	1.16	1.68	0.98	0.69	1.42
26	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	ER6a	ExonRegion	0	42.52	6.99	71.21	94.75	12.31	18.09	12.25	56.91	37.84	44.89	23.29	9.04	7.09	33.98	39.96	44.17	21.04	19.86	28.87	27.39	9.56	16.54	30.03
28	E6_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	E6a_E6b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	E6a_E6c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E6a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	ER6b	ExonRegion	0	187.77	57.64	121.57	98.01	82.88	79.95	134.49	53.85	53.78	35.96	40.83	31.32	30.96	62.44	63.07	129.92	58.41	65.23	42.70	31.09	23.21	19.75	48.98
33	E6_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER6c	ExonRegion	0	75.66	28.93	261.19	197.96	81.72	84.10	121.15	108.99	69.61	68.32	132.67	105.69	102.79	134.74	151.90	306.74	150.88	150.27	79.78	64.51	72.56	41.69	115.46
35	E6_Db	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	E6b_E6c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER6d	ExonRegion	0	329.69	90.36	267.81	172.88	179.93	155.21	231.93	124.00	58.61	58.50	150.74	128.48	172.86	186.94	229.99	387.94	209.61	158.86	108.88	75.23	105.55	51.66	154.84
38	E6_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER6e	ExonRegion	0	81.08	25.67	177.67	126.00	78.07	94.26	113.05	101.04	55.01	42.01	64.28	70.75	105.65	85.51	131.04	187.24	126.82	92.65	62.14	54.26	63.04	30.49	94.64
40	E6_Dc	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	E6c_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER6f	ExonRegion	1	39.70	23.92	37.89	18.62	22.05	55.97	66.09	12.85	5.96	5.30	9.91	25.74	39.76	29.54	42.16	46.44	23.12	19.56	20.33	14.56	9.60	6.58	33.49
43	E6_Dd	NovelBoundary	0	40.23	17.30	15.11	8.12	32.51	26.35	37.71	7.60	5.93	4.97	12.11	5.55	34.74	25.90	28.68	25.55	13.84	12.31	14.68	11.95	5.07	2.27	22.71
44	E6_De	NovelBoundary	0	85.57	38.61	39.68	54.97	62.05	29.19	59.71	14.17	14.61	15.34	18.43	41.11	41.07	42.97	70.09	115.61	63.86	36.85	47.72	49.60	12.05	3.06	39.18
45	ER6g	ExonRegion	0	20.81	15.59	6.94	2.27	4.01	2.75	20.74	0.86	0.00	2.10	7.41	15.15	13.29	12.18	22.73	12.88	10.45	1.85	26.01	9.57	8.45	4.17	24.47
46	ER7a	ExonRegion	0	56.14	24.67	59.41	53.99	114.33	152.75	131.57	32.82	20.74	22.79	33.26	42.01	57.83	64.70	92.42	91.04	37.54	54.65	51.89	28.47	24.46	16.97	30.10
47	E7_Da	KnownBoundary	0	452.38	312.31	451.14	340.42	230.90	209.20	325.26	259.67	315.82	237.11	157.46	144.20	123.21	76.34	219.67	426.73	315.29	480.86	387.49	374.62	201.58	145.31	356.39
48	ER7b	ExonRegion	0	55.38	34.17	113.37	74.86	59.08	61.05	68.49	52.56	45.81	39.97	55.36	82.00	111.60	134.13	196.28	155.01	92.09	137.14	93.03	82.34	30.41	32.05	77.36
49	E7_Db	NovelBoundary	0	115.13	67.36	121.28	99.92	250.34	220.16	276.41	44.40	52.31	36.83	119.98	118.09	189.92	315.32	316.46	278.30	191.77	128.55	149.56	115.69	44.23	60.80	142.47
50	Ix_SR2	SilentIntronRegion	0	14.06	1.02	25.40	13.23	7.04	5.97	15.43	13.23	4.84	17.35	4.36	2.68	3.01	2.51	5.15	10.06	1.65	27.16	18.76	10.67	3.31	1.31	12.51
51	Ix_SR3	SilentIntronRegion	0	17.39	4.87	30.10	22.25	3.70	4.07	4.88	9.46	9.83	4.64	5.60	2.62	3.00	2.04	10.34	21.23	8.86	12.02	17.41	11.57	4.91	4.12	10.31
52	Ix_SR1	SilentIntronRegion	0	39.98	3.84	9.20	10.21	30.36	19.58	4.17	1.62	3.48	0.00	0.00	2.24	4.86	0.72	1.50	5.58	2.08	34.70	4.01	4.02	4.11	0.00	5.51
53	ER8a	ExonRegion	0	2.80	3.00	33.88	30.36	22.88	9.03	5.53	43.60	18.50	17.72	6.04	0.32	4.69	2.72	3.99	11.37	5.28	20.00	3.50	0.27	4.13	0.78	2.50
54	E8_Da	KnownBoundary	0	15.11	19.73	275.98	235.67	73.34	74.84	54.67	217.94	96.93	120.50	31.06	11.10	0.00	4.77	27.44	57.93	37.03	134.39	65.88	31.64	34.10	7.35	36.54
55	ER8b	ExonRegion	0	12.45	12.14	84.62	85.22	67.29	63.97	24.30	129.58	65.28	62.51	27.34	11.59	12.28	19.44	40.79	39.42	30.58	43.04	34.48	11.14	40.51	10.60	20.21
56	E8b_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	Ix_SR1	SilentIntronRegion	0	8.98	4.42	35.35	22.31	13.97	16.95	13.68	18.21	10.20	16.17	5.46	1.94	5.76	3.16	11.15	22.62	12.20	24.67	16.26	12.49	11.26	4.99	11.82
58	Ix_AR1	ActiveIntronRegion	0	25.03	5.44	19.67	16.12	11.10	8.35	25.01	8.19	5.35	6.92	2.31	4.57	10.91	1.32	5.18	7.11	3.98	8.19	12.68	10.60	2.60	4.83	9.58
59	ER9a	ExonRegion	0	2.80	3.12	38.74	27.68	8.83	14.54	5.33	40.97	30.66	26.21	5.39	1.56	4.60	4.54	9.59	13.75	6.78	13.13	9.95	4.71	13.33	2.09	3.09