Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PHKG1 Gene 0 9.94 8.69 21.57 16.59 9.09 8.84 11.64 9.01 5.56 6.11 5.79 5.56 5.44 7.38 9.85 13.58 11.79 15.17 9.95 15.15 11.39 5.10 11.38 2 492124 Transcript 0 26.69 36.56 28.02 17.26 25.84 17.68 41.79 7.16 5.70 4.01 10.31 22.13 16.05 12.83 20.22 30.96 17.07 20.48 31.22 38.23 22.25 8.38 26.95 3 297373 Transcript 0 7.92 3.13 21.87 22.55 5.95 8.26 6.17 11.94 7.42 5.83 4.51 0.69 1.33 4.83 7.71 11.05 12.38 17.21 4.52 11.19 9.59 4.19 6.59 4 467726 Transcript 0 3.99 3.28 6.57 5.18 5.75 6.89 1.45 0.00 4.62 5.32 2.08 0.00 4.15 3.03 2.20 7.98 1.77 4.92 0.00 2.28 3.55 1.12 3.15 5 395428 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 489604 Transcript 0 0.00 0.00 2.12 0.00 0.81 0.00 0.80 0.78 0.56 0.00 0.00 1.08 0.00 3.96 0.64 2.71 0.00 0.84 0.97 0.00 0.67 1.26 0.89 7 432123 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 446428 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 471665 Transcript 0 8.13 1.63 22.36 8.86 13.08 12.82 14.51 7.08 3.69 2.75 5.04 5.83 6.31 5.29 6.92 9.03 13.46 7.93 3.16 6.79 13.86 2.85 12.69 10 IG16 Intergenic 0 11.69 17.21 40.78 25.04 20.54 9.33 11.47 13.77 9.90 9.79 3.77 7.75 7.00 3.97 10.42 9.15 6.53 18.00 16.59 19.73 4.23 6.42 11.95 11 IG16_SR1 SilentIntergenicRegion 0 11.70 17.22 40.81 25.06 20.55 9.33 11.48 13.78 9.90 9.79 3.77 7.75 7.00 3.97 10.42 9.16 6.53 18.01 16.60 19.75 4.23 6.42 11.96 12 ER1a ExonRegion 0 0.21 0.00 0.67 0.82 0.00 0.00 0.53 3.46 0.00 1.72 0.97 1.52 0.00 0.81 4.35 2.38 4.62 0.00 0.00 0.43 0.00 0.00 0.00 13 E1_Ac KnownBoundary 0 0.00 0.00 7.07 4.56 0.00 0.00 0.00 3.98 1.42 2.69 2.53 6.30 0.00 2.30 0.00 3.67 8.23 9.29 0.00 0.00 2.29 0.00 0.00 14 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 0.00 0.00 0.00 0.00 15 E1_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.36 0.00 2.07 0.00 0.00 0.00 0.00 0.00 16 ER1b ExonRegion 0 2.88 1.79 5.64 2.18 2.46 3.08 2.65 7.12 0.00 2.98 1.93 7.97 0.00 1.62 11.37 8.08 6.60 3.77 0.00 3.06 0.00 1.92 0.00 17 E1_Af KnownBoundary 0 10.89 2.50 13.96 3.23 4.33 0.00 0.00 7.56 0.00 1.67 2.11 0.00 0.00 0.00 0.00 0.00 0.00 4.81 0.00 3.13 0.00 2.69 0.00 18 ER1c ExonRegion 0 8.47 2.03 7.35 2.73 5.35 3.67 2.65 8.64 0.00 3.44 1.93 8.66 0.00 1.62 5.80 8.92 6.60 7.39 0.00 4.26 0.00 2.08 0.00 19 ER1d ExonRegion 0 8.47 2.03 7.35 2.73 5.35 3.67 2.65 8.64 0.00 3.44 1.93 8.66 0.00 1.62 4.64 8.92 6.60 7.39 0.00 4.26 0.00 2.08 0.00 20 ER1e ExonRegion 0 9.68 3.20 11.38 2.73 5.35 3.67 2.65 8.64 0.00 3.44 2.76 5.57 0.00 0.12 2.69 7.01 2.83 7.79 0.00 4.26 0.00 4.17 0.63 21 ER1f ExonRegion 0 23.06 9.74 9.87 2.03 3.90 15.97 9.85 2.54 0.06 2.69 1.87 3.83 0.00 2.35 1.96 2.11 5.26 6.22 3.35 9.51 4.32 3.19 9.24 22 E1_Da NovelBoundary 0 2.96 6.45 19.99 18.41 3.14 0.00 12.63 6.94 5.03 3.28 7.21 0.00 0.00 2.47 4.45 0.00 0.00 18.70 4.42 11.44 8.15 0.00 12.72 23 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 0.00 24 I1 Intron 0 7.29 4.32 20.31 11.94 7.26 4.41 6.85 5.71 3.74 5.63 1.43 2.62 3.05 2.62 6.78 9.70 7.62 10.21 6.09 10.94 8.27 3.60 8.60 25 I1_SR1 SilentIntronRegion 0 7.30 4.32 20.34 11.96 7.26 4.41 6.86 5.72 3.75 5.64 1.43 2.62 3.06 2.63 6.79 9.71 7.63 10.22 6.10 10.96 8.28 3.60 8.61 26 E2_Aa NovelBoundary 0 3.26 8.88 28.27 33.93 7.39 5.79 20.09 16.63 1.68 12.11 5.11 0.00 0.00 2.47 8.90 16.24 4.30 19.28 11.29 23.84 12.54 6.25 18.95 27 ER2a ExonRegion 0 8.32 3.42 37.67 28.45 6.82 5.50 9.61 10.74 6.37 9.54 5.30 4.44 1.48 8.87 10.02 15.09 13.09 30.45 13.10 14.60 10.70 6.25 16.54 28 E2_Da KnownBoundary 0 7.48 12.50 34.95 27.87 20.63 12.89 18.77 14.46 4.22 10.34 9.69 0.00 6.66 0.00 4.45 36.91 17.95 42.28 23.15 15.98 9.20 6.12 27.66 29 E2a_E3a KnownJunction 0 3.78 2.83 25.72 13.48 4.33 2.73 1.85 6.12 4.02 5.37 7.16 0.00 0.00 12.01 13.47 0.00 0.00 20.56 0.00 6.52 2.59 2.45 12.72 30 E2a_E6a KnownJunction 0 0.00 0.00 4.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.69 0.00 0.00 0.00 0.00 31 ER2b ExonRegion 0 26.69 36.56 28.02 17.26 25.84 17.68 41.79 7.16 5.70 4.01 10.31 22.13 16.05 12.83 20.22 30.96 17.07 20.48 31.22 38.23 22.25 8.38 26.95 32 E2_Db NovelBoundary 0 59.27 45.78 29.36 45.05 51.10 73.08 80.82 24.48 28.41 21.79 38.69 27.46 37.01 34.96 49.08 67.50 35.72 74.33 45.65 83.03 44.97 13.47 35.77 33 E3_Aa NovelBoundary 0 21.49 15.26 22.44 21.61 16.55 0.00 12.90 6.74 5.06 7.47 2.68 0.00 0.00 0.00 13.47 4.36 0.00 21.02 30.31 24.29 14.83 5.57 3.76 34 ER3a ExonRegion 0 2.04 0.94 10.56 7.33 0.73 2.82 2.18 4.18 2.76 3.43 4.44 0.00 0.00 2.90 1.62 0.00 2.55 5.68 0.00 4.05 3.04 0.37 4.13 35 E3_Ab KnownBoundary 0 0.00 0.00 39.47 19.84 0.00 0.00 0.00 11.62 10.27 9.72 0.00 0.00 0.00 7.12 9.39 7.86 12.44 14.76 16.00 18.09 5.75 5.76 7.43 36 ER3b ExonRegion 0 3.12 1.03 11.47 11.42 0.79 3.57 1.80 4.95 2.17 6.34 1.53 0.00 0.00 5.21 4.79 0.00 1.53 9.53 0.00 2.64 4.96 5.15 3.52 37 E3_Da NovelBoundary 0 0.00 3.03 22.44 25.30 3.57 10.22 7.60 2.55 12.24 3.60 0.00 0.00 5.84 0.00 9.64 3.85 0.00 16.29 0.00 15.15 16.62 5.63 4.35 38 E3a_E4a KnownJunction 0 7.11 2.96 13.16 10.19 4.33 5.45 6.40 5.42 4.54 5.80 4.53 0.00 0.00 12.36 18.54 0.00 3.55 7.63 0.00 8.44 0.00 2.76 6.91 39 E3a_E6a KnownJunction 0 3.78 2.76 1.83 5.96 0.00 2.27 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 0.00 0.00 40 E4_Aa NovelBoundary 0 17.11 0.00 13.36 9.49 12.56 5.74 14.44 1.81 1.56 8.68 0.00 5.85 6.33 12.30 4.45 7.78 4.77 15.50 9.60 19.94 27.31 5.51 3.33 41 ER4a ExonRegion 0 5.16 0.52 8.96 6.69 1.65 2.90 3.56 2.95 1.98 2.86 2.74 0.00 0.00 5.55 6.65 1.41 7.56 5.38 0.00 7.27 7.05 0.53 7.74 42 E4_Da KnownBoundary 0 3.78 0.00 5.59 3.36 0.00 2.67 0.00 2.42 1.27 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.18 0.00 2.94 0.00 0.00 0.00 43 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 E4a_E6a KnownJunction 0 14.45 0.00 7.18 3.56 3.57 0.00 3.80 2.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.36 7.67 4.23 0.00 6.07 13.16 0.00 3.59 45 ER4b ExonRegion 0 3.99 3.28 6.57 5.18 5.75 6.89 1.45 0.00 4.62 5.32 2.08 0.00 4.15 3.03 2.20 7.98 1.77 4.92 0.00 2.28 3.55 1.12 3.15 46 E4_Db NovelBoundary 0 0.00 9.14 34.39 29.03 3.65 10.51 12.76 6.74 1.59 7.63 7.11 6.15 0.00 2.35 0.00 8.12 7.29 14.47 4.33 11.82 14.09 5.51 16.05 47 I4 Intron 0 5.82 6.29 17.45 12.01 10.85 7.56 9.92 5.67 5.95 4.58 3.06 6.79 6.88 5.03 6.30 13.48 9.08 10.17 12.04 9.36 8.63 5.30 16.35 48 I4_SR1 SilentIntronRegion 0 5.83 6.31 17.49 12.04 10.88 7.58 9.95 5.68 5.96 4.59 3.06 6.81 6.90 5.04 6.32 13.52 9.10 10.19 12.07 9.39 8.66 5.31 16.39 49 E5_Aa NovelBoundary 0 3.04 2.89 16.59 11.35 3.48 0.00 4.20 6.28 3.30 4.32 0.00 6.30 0.00 0.00 13.35 20.59 8.98 12.06 4.42 11.25 5.19 2.69 19.80 50 ER5a ExonRegion 0 0.00 0.00 4.23 0.00 1.62 0.00 1.61 1.56 1.12 0.00 0.00 2.16 0.00 7.93 1.28 5.41 0.00 1.67 1.93 0.00 1.34 2.53 1.78 51 I5 Intron 0 5.34 3.03 14.86 9.78 5.52 3.15 3.64 4.43 5.06 2.35 1.55 0.82 1.87 4.91 6.83 10.90 5.30 8.31 6.21 4.39 4.54 3.58 8.08 52 I5_SR1 SilentIntronRegion 0 5.60 3.18 15.56 10.21 5.79 3.31 3.82 4.60 5.31 2.47 1.60 0.86 1.96 5.15 7.12 11.38 5.56 8.68 6.51 4.61 4.76 3.74 8.42 53 E6_Aa NovelBoundary 0 6.52 9.60 23.74 11.95 7.39 4.66 15.94 9.78 7.78 3.33 2.68 0.00 0.00 0.00 4.45 0.00 14.03 15.50 3.76 11.31 5.81 8.51 3.16 54 ER6a ExonRegion 0 4.91 2.71 11.72 13.61 7.50 11.03 4.51 4.56 3.29 3.74 3.66 4.26 2.98 3.15 8.40 2.93 6.10 10.97 4.92 8.87 7.58 1.52 8.81 55 E6_Da NovelBoundary 0 0.00 3.35 21.79 8.46 3.74 0.00 3.89 2.46 6.42 1.40 2.21 12.60 6.82 4.53 11.13 11.28 8.98 8.91 23.15 11.70 5.25 5.14 4.01 56 E6a_E7a KnownJunction 0 0.00 0.00 17.74 22.37 8.57 5.68 5.43 6.04 6.45 5.45 7.90 6.30 0.00 9.59 13.35 3.59 0.00 19.98 0.00 8.56 5.50 0.00 0.00 57 I6 Intron 0 22.83 4.49 17.46 6.47 2.62 4.50 7.47 4.42 5.87 2.93 2.84 0.87 6.63 2.48 8.16 14.57 12.95 10.60 7.03 10.96 4.85 4.09 10.08 58 I6_SR1 SilentIntronRegion 0 23.06 4.53 17.63 6.53 2.65 4.54 7.54 4.46 5.92 2.96 2.87 0.88 6.69 2.51 8.24 14.72 13.08 10.70 7.10 11.06 4.90 4.13 10.18 59 E7_Aa NovelBoundary 0 9.56 2.63 23.27 5.93 11.54 9.77 4.06 4.72 7.96 4.11 7.58 0.00 14.28 2.47 0.00 4.36 23.00 11.69 3.58 5.75 2.35 3.00 4.35 60 ER7a ExonRegion 0 11.84 6.04 44.05 28.59 10.20 8.21 6.70 15.62 12.38 14.35 10.66 5.02 4.46 9.86 15.89 22.54 32.13 26.11 12.77 28.38 19.68 11.08 7.53 61 E7_Da KnownBoundary 0 19.78 0.00 48.19 44.68 11.54 5.05 15.02 36.60 18.49 20.04 10.42 0.00 26.78 16.25 12.49 55.88 25.99 31.96 27.39 32.92 22.43 32.33 28.00 62 ER7b ExonRegion 0 9.37 1.94 38.45 37.51 7.35 6.26 8.68 21.07 10.63 12.31 8.50 11.61 34.99 12.37 11.51 37.32 26.51 28.21 22.35 20.97 13.01 15.44 22.61 63 E7_Db KnownBoundary 0 12.89 0.00 23.27 18.45 4.24 2.90 11.97 11.87 5.93 4.19 4.63 12.60 13.64 2.47 0.00 23.41 25.71 13.64 4.71 8.63 11.31 3.12 28.08 64 E7b_E8a KnownJunction 0 2.74 0.00 13.48 14.55 0.00 2.50 2.21 0.00 1.39 1.29 2.05 0.00 0.00 2.35 9.27 0.00 4.68 7.79 0.00 0.00 0.00 2.27 8.28 65 E7b_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 ER7c ExonRegion 0 8.13 1.63 22.36 8.86 13.08 12.82 14.51 7.08 3.69 2.75 5.04 5.83 6.31 5.29 6.92 9.03 13.46 7.93 3.16 6.79 13.86 2.85 12.69 67 E7_Dc NovelBoundary 0 38.53 14.93 19.63 13.09 4.33 34.13 14.62 8.95 2.72 6.23 15.48 0.00 21.91 5.47 4.45 25.04 22.44 11.03 28.42 12.40 6.30 13.96 7.94 68 E8_Aa NovelBoundary 0 16.74 5.79 9.96 19.41 3.40 12.55 4.33 27.07 9.20 8.62 2.63 6.15 6.82 11.65 26.70 22.99 8.51 11.44 4.80 14.89 0.00 5.57 7.85 69 ER8a ExonRegion 0 4.49 2.28 21.32 22.30 6.88 6.99 5.14 6.38 3.15 5.37 10.15 2.00 4.33 8.39 6.73 3.95 15.85 18.25 5.32 18.49 10.63 5.68 8.71 70 E8_Da NovelBoundary 0 5.93 3.09 13.90 13.82 0.00 4.88 3.36 5.79 1.10 5.67 2.05 0.00 0.00 7.42 0.00 20.17 19.92 10.11 8.85 5.50 10.81 0.00 3.50 71 E8a_E9a KnownJunction 0 7.41 0.00 18.98 16.28 4.07 4.88 2.25 11.91 5.61 9.16 9.05 0.00 0.00 4.94 4.45 3.85 4.68 22.09 0.00 11.19 2.47 8.02 4.35 72 E9_Aa NovelBoundary 0 0.00 5.99 17.42 4.86 0.00 0.00 0.00 4.52 8.01 1.67 2.68 0.00 0.00 2.30 4.45 14.78 14.12 16.13 4.14 8.76 11.68 3.12 0.00 73 ER9a ExonRegion 0 3.98 2.83 19.12 18.83 5.35 4.83 7.82 10.21 5.28 6.81 7.56 0.00 0.00 6.94 9.06 2.97 9.20 28.78 6.18 7.93 7.35 11.62 4.81 74 E9_Da KnownBoundary 0 0.00 6.58 23.89 24.37 11.46 8.86 13.25 12.90 6.68 5.21 11.53 0.00 0.00 9.89 15.45 0.00 17.95 40.46 16.85 9.91 11.31 13.90 11.35 75 ER9b ExonRegion 0 5.06 8.66 29.55 27.65 8.51 13.70 7.90 12.81 10.40 11.91 9.52 3.01 4.88 10.16 16.30 17.05 18.58 22.13 10.53 18.59 16.06 7.42 7.26 76 E9_Db NovelBoundary 0 0.00 0.00 23.21 8.16 12.05 2.90 6.32 5.42 2.92 2.90 2.37 0.00 6.17 2.47 15.33 8.63 9.35 18.78 3.58 5.69 11.80 3.12 3.59 77 E9b_E10a KnownJunction 0 13.48 0.00 22.56 38.56 12.22 13.63 8.79 12.90 8.71 3.89 5.37 0.00 0.00 2.47 5.19 3.93 13.46 21.35 3.67 6.26 5.75 12.92 7.60 78 I9 Intron 0 0.79 2.27 8.16 4.54 1.00 5.46 0.99 0.00 1.37 0.64 4.32 0.00 1.44 4.84 1.52 5.53 7.37 10.26 4.74 5.54 8.20 2.33 7.65 79 I9_SR1 SilentIntronRegion 0 0.80 2.30 8.28 4.60 1.01 5.54 1.00 0.00 1.39 0.65 4.38 0.00 1.46 4.90 1.55 5.61 7.48 10.42 4.81 5.63 8.33 2.36 7.77 80 E10_Aa NovelBoundary 0 6.96 0.00 14.61 9.56 3.14 0.00 4.42 4.85 2.78 5.59 4.53 0.00 0.00 4.65 24.11 8.72 4.49 6.72 35.01 8.63 7.41 0.00 26.72 81 ER10a ExonRegion 0 5.32 4.28 19.54 36.27 7.00 4.98 5.70 14.14 10.10 8.88 4.01 0.00 0.48 9.70 10.49 11.28 9.23 24.02 9.23 9.71 2.88 7.59 9.71 82 E10_Da KnownBoundary 0 13.63 12.83 17.44 37.16 8.49 0.00 4.02 19.10 11.86 11.87 2.68 0.00 0.00 9.54 17.43 16.75 13.28 21.97 12.89 20.33 5.19 6.18 12.21 83 ER10b ExonRegion 0 6.71 5.24 29.72 27.71 4.09 4.57 7.81 20.70 10.14 11.39 8.38 0.00 0.00 7.39 11.37 9.53 11.88 27.10 4.69 15.90 9.80 1.48 11.54 84 E10_Db NovelBoundary 0 3.19 0.00 21.14 12.72 0.00 14.54 1.99 9.12 5.99 8.41 0.00 6.00 0.00 12.01 0.00 19.23 22.07 29.27 17.69 14.83 11.12 5.57 19.89 85 E10b_E11a KnownJunction 0 0.00 0.00 22.18 21.18 0.00 10.39 2.25 9.73 8.36 2.04 0.00 0.00 0.00 2.94 4.45 16.15 12.81 18.03 0.00 8.76 0.00 0.00 0.00 86 I10 Intron 0 3.60 2.51 11.57 7.22 3.72 2.55 6.34 3.18 3.13 2.11 2.69 2.05 1.19 2.29 9.23 5.52 8.16 7.82 5.91 6.91 6.81 1.29 10.44 87 I10_SR1 SilentIntronRegion 0 3.62 2.53 11.64 7.26 3.74 2.57 6.38 3.20 3.15 2.13 2.70 2.06 1.20 2.30 9.29 5.55 8.21 7.86 5.94 6.95 6.85 1.30 10.50 88 E11_Aa NovelBoundary 0 0.00 0.00 28.65 13.98 0.00 0.00 2.25 2.26 3.50 6.31 0.00 0.00 0.00 7.42 18.30 4.02 7.48 12.81 11.77 6.01 8.71 0.00 8.19 89 ER11a ExonRegion 0 7.81 4.89 20.01 16.65 7.30 7.28 6.47 13.35 6.88 5.75 3.77 1.14 3.10 6.03 8.91 15.31 9.87 10.41 8.23 11.57 12.76 3.34 9.53 90 IG15 Intergenic 0 5.14 4.94 20.47 27.69 5.50 5.14 7.91 14.92 10.66 8.94 5.06 2.00 5.82 4.30 7.08 16.10 8.02 23.15 7.74 15.50 9.88 4.28 11.52 91 IG15_AR1 ActiveIntergenicRegion 0 5.16 4.96 20.54 27.79 5.52 5.16 7.94 14.97 10.70 8.97 5.07 2.01 5.85 4.32 7.10 16.16 8.05 23.24 7.76 15.56 9.91 4.29 11.56