Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C7orf36 Gene 0 61.64 92.98 104.31 121.08 122.42 110.78 101.16 76.35 50.99 97.50 24.05 48.68 24.20 25.61 36.17 26.50 23.92 30.81 38.15 53.53 19.52 43.07 25.21 2 223273 Transcript 0 58.00 90.20 114.28 120.82 103.30 56.72 64.15 75.93 48.80 96.45 20.72 41.33 19.27 17.82 33.47 18.30 18.42 22.28 33.07 42.71 17.34 46.26 19.46 3 474392 Transcript 0 13.32 21.18 14.56 25.38 33.52 30.47 39.76 15.97 16.42 29.50 7.09 26.21 18.05 6.92 9.10 4.14 9.89 4.84 3.68 16.52 2.42 6.31 2.73 4 448268 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.24 5 469737 Transcript 0 3.18 6.50 8.96 12.49 11.69 18.23 12.96 7.93 4.85 15.17 3.49 4.08 6.51 6.13 3.15 4.25 1.99 4.36 4.55 6.88 2.31 3.32 3.73 6 485025 Transcript 0 23.66 14.89 23.86 41.14 31.25 31.73 19.58 34.12 14.71 26.94 6.34 13.25 7.84 14.51 12.26 11.56 7.85 7.59 3.02 9.68 2.78 10.72 5.72 7 ER1a ExonRegion 0 2.12 4.47 0.00 0.00 0.80 4.77 1.72 0.00 0.00 0.00 1.55 0.00 0.00 2.60 1.45 0.59 0.00 0.00 2.23 1.06 1.54 0.00 0.00 8 ER1b ExonRegion 0 10.11 13.56 0.00 0.00 3.86 22.41 8.97 0.00 0.41 1.02 5.37 0.00 0.00 8.12 6.12 3.63 1.10 0.41 3.19 4.49 5.14 1.39 1.96 9 ER1c ExonRegion 0 115.72 165.32 28.09 40.90 120.74 291.17 239.63 19.88 25.11 31.18 10.55 5.86 2.70 8.64 10.90 24.65 10.90 52.61 28.04 29.45 16.16 15.36 31.19 10 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 Ix Intron 0 0.00 2.86 1.93 7.14 2.82 0.64 1.86 9.06 3.24 6.01 4.76 0.00 2.72 13.38 4.56 10.45 5.81 9.05 7.84 14.22 3.10 3.66 11.36 12 Ix_AR1 ActiveIntronRegion 0 0.00 2.89 1.95 7.24 2.86 0.64 1.89 9.19 3.28 6.10 4.83 0.00 2.75 13.57 4.61 10.60 5.89 9.17 7.95 14.42 3.14 3.72 11.52 13 E2_Aa NovelBoundary 0 2.74 0.00 9.93 20.88 12.05 18.17 14.13 8.01 12.59 15.98 2.68 0.00 5.68 21.01 0.00 4.36 7.01 8.17 8.38 3.13 5.87 3.12 7.51 14 ER2a ExonRegion 0 6.37 10.37 12.42 17.69 23.38 36.46 23.93 13.31 9.70 23.90 6.98 8.16 6.85 12.26 6.29 8.50 3.97 6.61 9.11 13.76 4.63 4.01 7.47 15 E2_Da NovelBoundary 1 10.74 25.06 17.18 48.61 24.28 21.46 40.28 0.00 23.06 23.99 2.11 46.37 26.13 12.13 5.56 19.99 7.85 7.50 16.94 32.34 0.00 3.12 3.76 16 E2a_E3b KnownJunction 0 0.00 2.63 5.50 7.29 0.00 0.00 1.99 2.55 0.00 6.45 0.00 0.00 6.17 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 2.63 0.00 17 Ix Intron 0 7.01 19.95 10.61 25.51 25.90 20.46 22.36 15.35 11.72 23.64 4.92 22.98 17.95 9.92 4.50 5.83 5.63 3.89 4.87 9.11 1.96 10.51 4.56 18 Ix_SR1 SilentIntronRegion 0 5.00 10.93 6.87 18.55 17.97 16.36 19.21 8.58 8.51 17.82 6.44 25.94 14.74 11.39 5.39 9.10 5.85 5.19 5.48 9.03 3.32 7.50 4.74 19 Ix_AR1 ActiveIntronRegion 0 8.83 28.12 14.00 31.83 33.11 24.20 25.25 21.50 14.65 28.94 3.56 20.35 20.88 8.62 3.71 2.88 5.45 2.73 4.33 9.19 0.75 13.24 4.42 20 E3_Aa NovelBoundary 0 2.96 28.42 18.83 31.80 32.60 36.68 37.54 40.21 21.87 23.85 6.90 5.70 0.00 14.54 15.82 15.55 0.00 16.71 8.56 5.94 6.05 6.12 0.00 21 ER3a ExonRegion 0 23.66 14.89 23.86 41.14 31.25 31.73 19.58 34.12 14.71 26.94 6.34 13.25 7.84 14.51 12.26 11.56 7.85 7.59 3.02 9.68 2.78 10.72 5.72 22 E3_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER3b ExonRegion 0 48.79 54.08 81.87 113.75 57.28 78.21 42.60 88.59 56.55 105.31 39.68 58.27 31.12 40.52 55.79 54.66 27.48 38.73 56.65 58.68 26.03 53.75 29.80 24 E3_Da KnownBoundary 0 67.42 64.46 138.94 184.53 54.58 91.14 56.31 133.90 90.31 167.75 42.80 43.21 13.31 55.51 27.44 55.28 29.55 79.05 62.50 96.90 27.61 68.52 58.73 25 ER3c ExonRegion 0 60.25 110.03 159.32 213.68 109.65 92.59 97.75 125.63 117.70 173.70 48.20 74.06 25.15 50.80 69.38 82.21 47.83 117.27 108.98 139.11 48.01 83.78 100.41 26 E3_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 E3b_E4a KnownJunction 0 73.05 169.71 191.12 257.68 180.98 125.89 140.00 144.87 117.65 181.24 48.43 56.27 41.72 51.80 70.83 82.88 67.79 131.12 155.02 166.95 62.70 91.79 113.11 28 E3b_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.24 29 ER3d ExonRegion 0 13.32 21.18 14.56 25.38 33.52 30.47 39.76 15.97 16.42 29.50 7.09 26.21 18.05 6.92 9.10 4.14 9.89 4.84 3.68 16.52 2.42 6.31 2.73 30 E3_Dc NovelBoundary 0 15.11 48.41 12.65 48.31 52.38 15.10 55.47 28.18 26.04 43.36 11.37 36.61 25.32 41.26 25.96 28.28 4.49 11.73 21.46 21.28 8.71 24.55 3.59 31 Ix Intron 0 18.71 26.17 10.83 20.47 31.58 27.74 34.00 17.71 8.08 17.54 1.95 16.55 14.74 7.67 5.78 3.70 4.70 3.82 5.29 14.89 1.83 6.67 1.92 32 Ix_SR1 SilentIntronRegion 0 11.19 16.12 4.83 6.92 42.46 27.68 38.01 16.54 6.95 18.06 2.19 10.87 20.57 11.51 6.19 3.37 12.47 6.25 6.02 15.27 3.33 9.46 4.42 33 Ix_AR1 ActiveIntronRegion 0 15.52 36.94 11.59 22.00 31.33 23.69 32.31 17.75 8.46 18.33 2.75 19.15 15.10 6.73 3.87 2.93 3.97 3.73 3.14 17.93 1.93 6.84 0.64 34 Ix_SR2 SilentIntronRegion 0 28.58 12.10 12.68 24.99 26.55 35.27 35.20 18.40 8.04 15.95 0.38 14.96 11.11 7.39 9.08 5.31 1.97 2.75 8.85 9.29 0.87 4.96 2.91 35 E4_Aa NovelBoundary 1 29.04 48.28 20.79 38.16 66.38 13.00 58.52 35.12 15.83 32.10 2.32 49.97 25.00 19.72 15.58 3.25 8.98 3.52 0.00 13.93 2.59 7.53 4.18 36 ER4a ExonRegion 0 83.58 181.54 200.57 232.56 521.29 396.29 278.24 153.01 94.77 172.17 46.34 94.53 32.89 51.51 59.36 54.98 46.21 79.95 73.79 132.32 48.57 82.73 49.28 37 E4_Ab KnownBoundary 0 196.03 335.53 270.72 302.93 822.41 607.89 654.71 204.71 131.89 228.06 64.91 164.45 64.44 45.74 77.51 65.45 55.82 56.21 92.14 123.30 61.90 100.85 51.99 38 ER4b ExonRegion 0 170.57 290.25 325.08 375.20 338.79 312.41 298.08 205.71 131.38 265.45 71.65 165.75 84.61 80.68 113.50 73.16 72.73 73.54 124.55 155.71 56.89 129.56 74.59 39 E4_Da KnownBoundary 1 191.44 142.28 327.40 408.47 173.77 133.45 110.67 275.16 163.25 305.58 80.28 111.04 19.80 69.16 160.58 85.62 77.14 44.98 170.26 178.78 87.23 136.92 40.38 40 ER4c ExonRegion 0 151.54 172.42 380.15 383.24 251.48 130.30 160.60 263.64 162.44 325.59 68.48 124.32 45.16 62.39 114.52 58.51 83.70 59.55 119.00 166.47 58.05 134.36 48.58 41 E4_Db KnownBoundary 0 297.09 230.29 487.80 461.38 494.65 211.92 246.43 276.26 188.37 346.33 93.02 122.59 60.55 76.11 143.40 71.26 96.03 87.43 89.98 142.60 36.02 133.00 35.00 42 ER4d ExonRegion 0 113.89 175.93 228.55 241.64 205.79 108.67 126.59 151.87 97.59 192.90 39.90 82.65 38.54 33.03 65.49 36.01 36.83 44.56 63.91 84.36 33.13 92.51 38.92