Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC018633.1 Gene 0 12.66 20.11 17.24 18.83 18.54 29.07 17.14 19.89 14.19 12.09 13.92 14.56 18.20 10.40 15.04 11.08 5.89 12.63 13.06 15.56 3.63 11.28 11.70 2 417811 Transcript 0 6.27 9.96 8.16 7.38 7.91 10.23 7.37 8.09 5.23 5.58 9.22 7.47 7.60 5.31 6.73 2.78 0.89 4.45 5.07 5.51 0.91 5.79 3.39 3 412778 Transcript 0 14.26 21.78 13.55 19.26 16.29 33.91 16.20 19.96 9.69 8.94 8.72 8.14 13.24 8.57 17.84 15.07 8.25 13.88 13.96 14.53 3.91 9.86 14.38 4 ER1a ExonRegion 0 5.93 15.38 20.54 10.95 15.36 39.67 16.75 38.03 26.22 17.64 10.88 8.06 4.67 11.14 12.08 2.09 3.48 35.84 12.32 19.81 8.12 14.66 13.94 5 E1_Da NovelBoundary 0 11.11 30.92 38.32 21.68 36.59 52.47 25.70 43.54 50.14 35.97 21.43 0.00 0.00 5.18 8.90 0.00 4.11 25.25 13.37 39.18 8.28 20.33 26.63 6 E1a_E2a KnownJunction 0 0.00 2.50 3.87 10.89 3.90 0.00 0.00 0.00 0.00 2.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.00 0.00 0.00 0.00 0.00 7 Ix Intron 0 9.86 31.67 22.09 21.94 38.57 59.29 35.64 55.94 33.97 29.84 18.80 15.01 15.37 8.40 9.20 5.04 2.76 24.25 15.62 25.57 3.86 40.64 20.97 8 Ix_AR1 ActiveIntronRegion 0 9.88 31.70 22.11 21.97 38.61 59.35 35.67 56.00 34.01 29.87 18.82 15.02 15.39 8.41 9.21 5.05 2.76 24.27 15.64 25.59 3.86 40.68 20.99 9 E2_Aa NovelBoundary 0 26.00 42.43 61.41 63.06 54.24 43.67 53.04 67.28 49.02 30.73 32.06 60.47 41.56 16.83 48.46 4.36 0.00 12.81 9.41 40.59 2.41 31.41 12.80 10 ER2a ExonRegion 0 0.67 0.29 0.74 1.25 1.53 0.10 0.61 0.49 0.25 1.41 0.50 0.25 4.69 1.67 2.98 0.17 0.00 0.21 0.00 0.61 0.00 0.24 0.08 11 E2_Da NovelBoundary 1 60.83 120.18 90.24 73.02 60.27 72.34 137.30 72.37 67.42 52.33 5.05 66.47 51.62 7.42 62.30 24.27 9.26 10.53 18.07 62.83 5.93 42.07 19.55 12 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 Ix Intron 0 19.00 50.75 59.25 55.36 51.28 46.07 72.71 54.67 38.97 37.66 47.85 40.91 46.75 19.44 30.87 11.37 4.13 18.92 21.38 36.63 2.27 43.99 16.47 14 Ix_AR4 ActiveIntronRegion 0 30.65 51.30 75.37 65.93 61.78 64.38 78.50 72.39 46.48 51.24 47.18 28.93 40.39 18.66 42.48 14.93 3.44 26.62 24.97 36.94 2.40 61.90 18.63 15 Ix_AR3 ActiveIntronRegion 0 24.18 22.24 81.73 91.38 50.07 53.65 77.03 85.10 62.90 52.60 89.96 41.38 38.76 25.63 48.99 22.82 10.10 30.67 33.00 49.34 5.61 55.96 26.06 16 Ix_SR2 SilentIntronRegion 0 9.09 41.15 77.34 89.95 32.42 82.09 143.61 68.93 53.76 53.36 75.95 30.82 14.90 21.02 31.06 17.13 16.89 35.65 16.86 44.31 6.61 47.92 11.40 17 Ix_AR2 ActiveIntronRegion 0 13.51 53.65 87.79 85.82 30.38 95.90 123.52 61.41 50.82 56.94 72.14 27.76 36.69 16.43 33.54 16.35 14.56 42.17 26.61 38.24 4.80 49.09 21.16 18 Ix_SR1 SilentIntronRegion 0 6.03 28.41 31.00 35.04 26.45 37.05 44.11 38.05 26.98 23.29 26.87 32.65 25.64 13.72 19.64 7.52 2.01 14.11 10.77 23.44 0.89 28.82 13.64 19 Ix_AR1 ActiveIntronRegion 0 19.45 67.88 62.30 54.70 60.90 37.67 83.19 49.43 37.73 35.33 53.58 53.32 64.90 22.48 28.10 9.70 4.45 14.66 23.84 42.32 2.40 40.62 15.46 20 E3_Aa NovelBoundary 1 105.57 155.37 39.80 22.71 20.71 33.50 51.32 35.28 8.33 10.96 6.32 41.26 20.45 7.71 17.68 0.00 0.00 5.97 0.00 16.81 0.00 43.60 0.00 21 ER3a ExonRegion 0 64.44 63.48 60.21 46.90 41.29 34.84 45.50 34.54 20.61 31.89 58.14 54.10 46.27 28.19 30.22 14.64 3.72 7.35 27.72 31.63 1.67 43.89 18.45 22 E3_Da NovelBoundary 0 30.38 76.70 96.98 54.21 90.41 39.75 112.61 57.59 35.27 51.74 88.02 84.48 33.11 36.32 30.41 11.36 0.00 6.01 22.87 62.57 5.68 58.54 17.58 23 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 Ix_AR1 ActiveIntronRegion 0 36.37 74.08 130.06 96.29 89.02 71.99 114.04 69.74 46.64 50.18 112.87 78.96 80.04 52.76 56.06 27.47 5.03 58.87 57.51 64.54 6.95 77.26 43.43 25 ER4a ExonRegion 0 1.15 5.51 5.80 4.02 3.18 7.06 3.88 1.93 3.51 3.73 10.91 0.29 0.16 4.23 7.19 2.38 0.03 4.21 1.29 2.36 0.00 1.33 1.58 26 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER5a ExonRegion 0 0.98 11.71 1.88 5.44 16.22 18.16 13.85 9.13 3.68 5.58 17.46 9.57 16.64 8.68 11.27 6.41 0.10 0.00 1.71 4.37 1.18 2.81 3.00 28 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.07 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 29 E6_Ab NovelBoundary 0 10.08 15.92 18.39 16.98 6.71 11.24 48.23 13.02 14.09 38.04 40.48 13.20 26.62 14.72 14.96 46.65 30.86 21.56 16.66 44.68 5.62 6.06 12.38 30 ER6a ExonRegion 0 0.00 0.31 1.23 1.00 0.00 0.00 0.66 2.53 0.52 1.68 5.06 0.00 4.69 3.25 6.14 4.69 3.30 0.00 1.84 3.11 0.00 2.16 3.61 31 ER6b ExonRegion 0 0.00 0.00 2.80 3.75 1.17 3.95 1.49 3.84 2.47 5.95 5.92 0.00 6.74 2.84 8.34 13.84 2.27 1.33 3.19 6.58 0.00 2.73 5.23 32 E6a_E7a KnownJunction 0 0.00 0.00 6.03 5.23 3.40 8.69 4.33 4.60 3.59 10.13 2.68 0.00 6.66 2.35 0.00 12.82 0.00 2.24 0.00 8.18 0.00 2.63 4.35 33 ER7a ExonRegion 0 3.01 3.34 8.64 7.35 13.06 8.43 3.87 3.95 5.53 3.52 8.47 12.19 13.76 12.89 12.27 11.66 1.47 6.61 0.59 13.11 2.49 0.93 3.89 34 E7a_E8a KnownJunction 0 3.78 11.45 11.74 9.92 0.00 5.39 0.00 1.89 4.11 1.56 2.63 0.00 13.64 4.94 4.45 3.33 3.83 3.27 4.14 2.56 0.00 0.00 0.00 35 ER8a ExonRegion 1 7.02 14.57 24.61 17.15 17.37 15.96 14.29 14.35 27.07 13.77 9.31 31.59 19.37 9.80 9.02 11.74 0.24 10.12 6.05 8.73 2.70 11.50 0.45 36 E8a_E9a KnownJunction 0 3.78 6.31 17.42 16.68 22.50 11.87 17.05 6.74 26.50 11.36 17.21 6.30 19.48 7.42 4.45 0.00 0.00 4.15 14.40 18.73 3.15 6.25 8.19 37 ER9a ExonRegion 0 3.18 15.61 23.05 15.63 34.72 42.47 16.94 12.24 18.52 9.67 11.18 18.57 16.71 9.84 14.46 9.24 0.93 7.21 14.79 12.38 2.99 9.01 9.37 38 E9a_E10a KnownJunction 0 9.85 15.92 7.66 25.60 24.28 39.86 8.57 5.63 19.88 7.39 25.27 24.61 7.63 19.42 15.95 38.71 4.49 4.97 27.11 21.28 3.15 5.63 0.00 39 ER10a ExonRegion 0 1.01 11.96 16.10 17.79 11.04 31.92 18.65 11.86 18.00 12.27 10.34 15.80 13.17 12.27 14.60 8.25 3.48 7.33 15.25 12.95 2.13 9.20 8.65 40 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER11a ExonRegion 0 5.07 9.96 16.94 12.48 15.09 9.49 8.97 13.26 11.37 6.66 17.46 4.33 16.58 9.63 16.91 5.64 6.09 16.28 6.81 7.85 1.71 7.62 10.94 42 E11a_E12a KnownJunction 0 17.71 5.72 14.22 19.18 17.06 8.57 10.73 11.58 4.75 3.09 12.11 0.00 19.97 7.95 30.90 12.73 4.30 16.58 8.28 6.46 2.66 5.27 7.51 43 ER12a ExonRegion 0 6.58 11.14 13.23 18.44 17.89 24.08 13.46 12.51 16.84 7.78 14.75 9.27 17.64 8.72 25.54 11.11 2.55 7.13 12.01 19.06 3.31 6.52 9.13 44 E12a_E13a KnownJunction 0 3.33 0.00 16.59 6.93 16.30 13.29 8.61 8.71 12.04 6.39 26.48 13.80 40.26 4.89 10.88 4.27 0.00 7.67 4.80 9.33 0.00 8.88 8.11 45 ER13a ExonRegion 0 3.41 5.47 14.21 13.56 16.08 16.67 8.43 11.30 11.60 3.64 17.07 13.16 23.12 6.19 13.52 3.57 1.95 15.95 8.98 15.09 1.19 8.65 2.61 46 E13a_E14a KnownJunction 0 3.78 9.60 3.10 10.52 25.64 8.01 9.58 20.91 6.80 3.01 11.74 5.70 20.45 2.12 9.89 3.76 4.11 9.66 0.00 12.34 0.00 6.25 0.00 47 ER14a ExonRegion 0 7.16 8.66 11.59 9.58 14.92 37.15 9.91 13.85 7.28 3.87 15.79 7.44 24.29 6.35 13.61 7.16 1.61 4.15 6.04 14.38 1.44 7.45 7.04 48 E14_Da NovelBoundary 0 0.00 0.00 8.19 8.32 0.00 2.78 7.33 2.18 1.79 0.00 2.26 13.95 8.28 2.30 10.88 0.00 0.00 4.56 3.76 3.26 0.00 0.00 0.00 49 E14a_E15a KnownJunction 0 3.48 3.16 13.10 9.02 19.52 13.23 8.17 7.93 10.91 3.28 16.32 0.00 33.60 10.60 10.01 0.00 0.00 0.00 0.00 5.82 0.00 13.29 4.10 50 E15_Aa NovelBoundary 0 0.00 3.35 1.42 18.81 0.00 0.00 1.72 1.93 7.44 0.00 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 51 ER15a ExonRegion 0 4.14 14.74 7.40 10.08 14.72 17.38 6.95 9.00 10.24 3.03 12.93 8.93 15.14 7.44 7.62 2.79 0.00 1.92 11.35 6.16 0.00 3.52 1.04 52 E15_Da NovelBoundary 0 3.78 29.07 2.84 10.49 22.16 33.56 8.52 11.79 11.75 2.63 8.95 12.30 20.94 7.42 0.00 0.00 0.00 0.00 19.48 8.25 0.00 3.06 0.00 53 E15a_E15b KnownJunction 0 3.70 28.81 1.57 7.36 8.40 21.58 6.62 12.65 5.87 1.50 4.90 0.00 7.30 2.71 0.00 0.00 0.00 1.99 3.95 3.20 0.00 3.06 0.00 54 E15b_E16a KnownJunction 0 0.00 8.95 5.38 3.80 3.48 5.56 6.32 2.55 4.98 1.67 5.37 5.70 0.00 2.59 0.00 4.36 0.00 2.57 8.94 0.00 0.00 0.00 0.00 55 ER15b ExonRegion 0 2.12 20.34 3.68 8.18 13.38 20.17 5.30 10.37 8.03 2.29 7.73 17.32 14.07 6.50 5.80 2.97 0.00 3.70 15.93 4.26 0.00 2.08 0.00 56 ER15c ExonRegion 0 1.68 19.77 5.75 6.86 7.57 12.27 8.40 7.63 7.84 2.10 6.00 14.03 8.89 3.02 1.30 2.97 0.00 1.85 10.43 3.67 0.00 2.16 0.00 57 ER16a ExonRegion 0 0.00 8.91 7.88 8.56 2.45 18.40 10.26 10.31 10.07 2.33 6.67 2.53 0.47 2.63 2.71 10.95 0.00 1.94 1.86 4.57 0.00 4.93 2.35 58 E16a_E17a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 ER17a ExonRegion 1 0.62 6.05 2.95 10.12 3.70 25.01 4.07 14.87 11.42 2.96 2.80 15.10 2.16 7.25 7.03 3.77 0.00 1.59 1.39 3.52 0.00 3.21 1.54 60 E17b_E18a KnownJunction 0 3.78 8.68 2.90 6.46 11.71 24.13 0.00 14.42 10.53 4.03 2.68 0.00 0.00 2.30 8.90 3.67 0.00 1.87 4.24 3.26 0.00 2.51 8.28 61 ER17b ExonRegion 0 2.82 9.49 3.27 9.09 13.38 25.67 3.09 17.28 11.94 3.44 3.87 8.66 0.00 5.41 11.61 2.97 1.10 2.46 3.19 4.96 1.47 2.08 12.73 62 Ix Intron 0 4.63 11.12 7.25 17.90 10.47 11.71 6.90 7.83 6.89 7.61 1.84 3.96 8.63 2.54 7.08 5.00 0.66 4.81 6.61 6.36 1.25 2.48 5.20 63 Ix_AR1 ActiveIntronRegion 0 8.42 17.48 9.03 34.40 14.09 11.63 12.41 9.59 8.58 12.19 3.07 5.30 14.29 2.91 11.98 7.15 0.54 5.21 8.57 9.50 2.28 2.79 5.06 64 Ix_SR1 SilentIntronRegion 0 5.73 13.68 10.19 20.33 12.95 16.13 7.73 9.60 8.59 8.95 2.17 3.95 7.75 3.18 7.99 5.80 0.87 6.75 8.69 7.58 1.60 3.01 6.56 65 E18_Aa NovelBoundary 0 873.56 646.13 335.00 370.22 774.79 527.08 878.18 386.34 293.08 325.57 192.21 78.93 138.14 42.09 89.38 511.40 436.18 316.12 343.07 582.16 320.19 233.67 495.96 66 ER18a ExonRegion 0 58.33 52.23 18.17 15.42 46.29 81.55 59.05 19.73 14.58 11.10 23.38 38.37 50.10 27.07 37.01 71.89 42.40 22.82 68.14 43.78 23.90 32.66 77.43 67 E18a_E19a KnownJunction 0 12.74 20.00 15.29 12.85 0.00 30.55 3.80 15.73 6.19 1.67 7.16 0.00 0.00 4.77 13.35 15.30 0.00 9.87 4.05 9.20 4.82 0.00 7.43 68 E18a_E20a NovelJunction 0 17.71 8.49 8.87 5.49 11.63 15.16 4.20 16.84 0.00 5.56 12.63 0.00 0.00 7.30 8.90 7.52 0.00 1.78 9.60 6.01 0.00 5.02 0.00 69 ER19a ExonRegion 0 6.45 8.60 15.56 21.19 4.80 23.55 4.19 12.62 16.10 4.27 10.74 1.24 0.00 4.99 12.55 6.20 4.01 15.44 4.78 8.07 0.73 2.91 6.53 70 E19a_E20a KnownJunction 1 11.04 6.58 23.57 20.71 12.31 23.57 12.81 12.45 0.00 5.48 9.16 0.00 0.00 0.00 28.68 7.78 0.00 17.99 0.00 11.25 0.00 5.57 0.00 71 E20_Aa NovelBoundary 1 88.46 194.44 26.05 55.57 247.03 326.57 151.74 44.03 67.24 57.32 68.70 201.82 175.15 64.57 32.14 66.05 55.17 55.92 66.26 97.79 35.83 61.36 71.88 72 ER20a ExonRegion 0 2.84 9.63 16.92 24.08 10.45 35.93 4.10 21.56 0.84 11.45 11.78 3.27 4.46 11.86 16.90 8.92 3.65 19.84 14.29 5.81 0.01 7.70 11.29 73 E20_Da NovelBoundary 1 79.94 265.54 140.09 162.95 212.82 196.36 112.97 160.44 117.07 140.81 146.88 182.31 250.47 135.32 45.99 81.09 129.69 88.59 155.49 159.98 76.05 125.83 99.53 74 E20a_E21a KnownJunction 0 7.56 11.12 17.39 33.73 11.71 41.96 17.22 20.17 3.01 9.51 7.69 6.30 19.48 14.48 25.09 15.47 4.39 21.97 3.58 5.69 0.00 21.98 0.00 75 Ix Intron 0 5.34 4.38 11.13 14.29 15.18 9.54 12.93 8.25 5.22 6.91 6.40 9.79 15.58 4.54 4.45 4.84 2.95 1.64 3.68 4.92 1.04 5.80 5.55 76 Ix_SR1 SilentIntronRegion 0 5.34 4.38 11.14 14.31 15.19 9.55 12.94 8.26 5.23 6.92 6.40 9.80 15.59 4.54 4.46 4.84 2.95 1.65 3.68 4.92 1.04 5.81 5.56 77 E21_Aa NovelBoundary 0 451.49 357.70 451.99 562.17 334.21 329.98 618.23 474.24 392.91 477.01 104.97 100.98 115.09 68.46 131.90 345.89 280.97 476.88 302.50 390.28 181.75 173.05 353.92 78 ER21a ExonRegion 1 46.65 61.75 29.82 39.22 36.08 49.08 60.48 51.07 22.07 28.93 14.47 26.58 47.46 21.36 46.01 38.73 37.16 47.39 44.77 61.45 14.41 27.67 37.92 79 E21_Da NovelBoundary 0 230.63 204.11 100.62 124.49 210.78 131.52 286.00 138.42 86.05 69.71 51.49 32.71 89.77 28.37 60.33 180.55 112.30 165.44 111.25 270.82 77.65 32.94 158.78 80 E21a_E22a KnownJunction 0 0.00 11.64 2.60 5.86 15.37 20.95 5.30 12.28 11.05 5.91 0.00 0.00 0.00 2.47 4.45 4.36 0.00 2.16 9.41 3.00 0.00 2.88 4.35 81 E22_Aa NovelBoundary 0 22.30 36.90 35.51 31.00 24.11 15.50 28.53 32.53 17.42 16.25 2.68 0.00 20.29 2.35 19.66 7.43 4.58 0.00 4.42 15.02 5.81 17.64 7.34 82 ER22a ExonRegion 1 15.21 32.84 15.52 35.19 25.00 28.42 17.77 29.50 14.14 20.05 8.78 13.32 30.03 5.46 9.47 5.56 6.33 2.83 7.12 14.70 1.53 9.36 6.61