Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GS1-18A18.3 Gene 0 1.39 24.81 11.09 36.46 53.00 29.22 33.93 34.72 56.49 18.81 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.06 5.14 24.17 0.00 0.00 0.00 2 456049 Transcript 0 0.55 13.03 5.93 17.36 25.79 15.97 15.82 18.02 34.48 12.17 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.01 3.24 11.51 0.00 0.00 0.00 3 ER1a ExonRegion 0 1.32 12.41 12.86 20.64 34.33 15.49 27.52 23.38 34.20 12.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.96 33.29 0.00 0.00 0.00 4 E1_Da NovelBoundary 0 0.00 3.03 4.38 12.69 44.48 37.02 34.84 27.52 44.85 4.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.60 64.81 0.00 0.00 0.00 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 Ix Intron 0 1.09 5.24 3.76 6.28 26.19 8.50 13.64 7.96 5.69 1.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.92 19.73 0.00 0.00 0.00 7 Ix_SR1 SilentIntronRegion 0 1.10 5.29 3.80 6.34 26.46 8.59 13.77 8.02 5.75 1.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.97 19.93 0.00 0.00 0.00 8 E2_Aa NovelBoundary 0 0.00 18.29 9.99 41.35 18.85 10.73 6.36 29.41 42.77 10.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.76 41.03 0.00 0.00 0.00 9 ER2a ExonRegion 0 1.58 21.16 9.78 34.51 49.40 23.58 33.45 31.07 38.89 11.71 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.09 3.98 24.45 0.00 0.00 0.00 10 E2_Da NovelBoundary 0 0.00 30.32 23.18 36.23 116.04 13.63 51.76 29.20 47.08 15.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.91 0.00 0.00 0.00 11 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 Ix Intron 0 0.50 19.15 7.30 24.67 66.59 45.71 33.63 38.86 72.64 20.39 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.29 5.38 25.19 0.00 0.00 0.00 13 Ix_SR1 SilentIntronRegion 0 0.93 19.32 11.40 30.47 46.89 24.47 29.78 25.87 46.17 12.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 3.57 22.18 0.00 0.00 0.00 14 Ix_AR1 ActiveIntronRegion 0 0.00 10.64 5.24 21.65 25.94 21.07 28.89 26.78 31.34 6.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 13.97 0.00 0.00 0.00 15 Ix_AR2 ActiveIntronRegion 0 1.85 8.13 1.68 16.35 24.08 25.67 22.18 21.39 42.46 4.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.37 21.28 0.00 0.00 0.00 16 Ix_SR2 SilentIntronRegion 0 0.26 10.82 3.06 12.32 25.26 21.21 22.29 14.24 31.68 9.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.02 20.58 0.00 0.00 0.00 17 Ix_AR3 ActiveIntronRegion 0 0.00 14.65 2.55 14.10 20.59 26.37 18.50 17.08 53.86 12.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 3.37 20.27 0.00 0.00 0.00 18 Ix_SR3 SilentIntronRegion 0 0.00 9.91 4.51 14.73 39.43 32.38 27.93 24.15 67.18 15.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.05 28.14 0.00 0.00 0.00 19 Ix_SR5 SilentIntronRegion 0 0.31 17.83 4.44 13.94 48.00 35.44 23.15 27.45 67.65 13.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 5.49 32.08 0.00 0.00 0.00 20 Ix_AR6 ActiveIntronRegion 0 0.39 12.62 6.17 26.24 72.55 51.40 37.62 48.83 88.63 20.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 5.84 30.17 0.00 0.00 0.00 21 Ix_SR6 SilentIntronRegion 0 0.55 25.43 10.04 34.69 115.89 72.27 46.82 71.70 120.31 36.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 7.88 33.70 0.00 0.00 0.00 22 Ix_AR7 ActiveIntronRegion 0 0.72 24.71 11.15 36.10 127.96 81.57 50.80 71.70 105.49 44.94 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.93 7.55 19.51 0.00 0.00 0.00 23 Ix_SR7 SilentIntronRegion 0 2.03 42.42 17.20 56.93 166.12 126.93 60.18 79.13 144.18 47.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.64 9.88 29.15 0.00 0.00 0.00 24 Ix_AR8 ActiveIntronRegion 0 3.08 74.40 15.75 45.54 281.14 233.52 101.21 76.55 182.92 50.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.19 28.72 0.00 0.00 0.00 25 E3_Aa NovelBoundary 0 3.19 161.88 73.18 305.79 584.30 475.64 179.70 466.97 765.18 358.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.20 58.61 0.00 0.00 0.00 26 ER3a ExonRegion 0 0.00 0.93 0.05 0.13 0.00 0.11 0.17 0.64 0.09 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 27 E3_Da NovelBoundary 0 3.63 110.44 76.49 181.70 311.29 239.12 135.36 409.10 619.26 262.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 39.15 62.57 0.00 0.00 0.00 28 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 I3 Intron 0 4.08 59.42 13.09 47.59 106.22 74.83 47.81 51.84 95.40 37.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.15 12.90 0.00 0.00 0.00 30 I3_AR1 ActiveIntronRegion 0 4.13 60.04 13.22 48.10 107.38 75.63 48.33 52.41 96.41 38.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.21 13.03 0.00 0.00 0.00 31 E4_Aa NovelBoundary 0 0.00 71.30 26.70 97.76 101.70 59.45 38.07 61.61 229.51 62.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.27 32.28 0.00 0.00 0.00 32 ER4a ExonRegion 0 0.94 56.69 18.79 66.27 96.80 72.62 49.62 68.53 168.18 61.04 0.00 1.97 0.00 0.00 0.00 0.00 0.00 0.00 7.75 22.83 0.00 0.00 0.00 33 IG35 Intergenic 0 0.92 12.34 7.15 29.72 46.38 33.54 17.57 33.27 72.81 26.20 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.04 5.46 8.92 0.00 0.00 0.00 34 IG35_AR1 ActiveIntergenicRegion 0 1.58 22.89 14.13 55.08 87.95 64.69 32.83 62.37 132.54 47.80 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.09 10.15 15.00 0.00 0.00 0.00