Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 JAZF1 Gene 0 60.77 103.74 65.78 68.12 176.19 227.32 171.83 180.31 94.96 129.02 75.08 26.92 31.84 46.66 11.76 43.14 67.47 96.07 62.24 107.05 65.12 106.34 52.01 2 283928 Transcript 0 2.68 1.20 0.38 0.00 1.24 11.38 2.03 0.00 0.66 0.00 1.54 0.00 0.42 5.73 0.00 0.90 3.33 0.00 1.54 2.56 2.26 2.73 1.49 3 454041 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.03 2.62 1.70 0.59 0.00 0.00 0.96 0.00 0.61 3.68 1.23 0.00 0.53 0.58 2.00 1.42 4 452993 Transcript 0 0.00 0.00 0.01 0.00 0.00 0.00 0.58 0.00 0.00 0.01 0.00 0.00 0.06 0.00 0.00 0.64 0.71 0.02 1.37 0.51 0.00 0.00 0.63 5 430432 Transcript 0 0.00 0.77 0.05 0.02 1.02 0.00 1.47 0.01 0.00 0.00 0.01 0.00 2.73 0.44 0.00 0.00 0.02 0.00 0.00 0.81 0.00 0.00 1.95 6 420835 Transcript 0 1.42 0.31 0.28 0.04 0.81 1.01 1.57 2.37 0.00 1.41 0.00 0.22 0.03 0.00 0.00 0.31 0.34 0.57 2.64 1.84 0.56 0.00 0.30 7 447620 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.01 0.00 0.51 0.00 1.10 1.19 0.00 0.00 0.91 0.00 0.57 0.00 0.00 0.00 0.00 0.00 8 427814 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 9 444222 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 466516 Transcript 0 0.91 0.88 0.20 0.22 3.47 0.20 3.15 0.00 0.80 0.54 0.21 0.73 0.00 0.30 0.22 0.32 0.37 1.29 0.69 1.59 3.82 0.45 0.32 11 ER1a ExonRegion 0 2.68 1.20 0.38 0.00 1.24 11.38 2.03 0.00 0.66 0.00 1.54 0.00 0.42 5.73 0.00 0.90 3.33 0.00 1.54 2.56 2.26 2.73 1.49 12 E1_Ab KnownBoundary 0 7.19 9.87 1.77 0.00 6.54 49.23 8.13 0.00 4.54 1.58 4.90 0.00 0.00 31.90 0.00 15.47 0.00 4.97 9.13 5.94 10.81 5.82 8.62 13 ER1b ExonRegion 1 3.84 17.70 5.45 4.09 67.69 248.14 116.70 21.13 15.00 17.18 34.79 0.00 2.78 37.23 1.72 7.21 47.13 72.88 41.70 39.09 73.38 29.52 39.32 14 E1_Ac KnownBoundary 1 6.22 28.48 11.56 5.99 217.66 664.16 331.71 44.40 23.81 34.65 70.02 0.00 11.69 42.97 0.00 11.19 98.18 139.12 76.52 95.11 135.11 70.17 71.36 15 ER1c ExonRegion 0 4.51 13.49 9.72 9.80 53.63 171.56 82.43 50.02 38.46 57.36 50.61 9.79 15.42 45.91 5.42 55.33 56.34 207.98 58.11 53.82 93.61 50.51 71.99 16 E1a_E5c KnownJunction 1 14.37 9.54 26.94 27.34 4.33 49.86 28.88 112.50 86.66 118.41 95.87 18.91 0.00 55.09 22.99 185.68 107.06 312.19 208.95 95.30 214.06 140.22 196.16 17 I1_AR4 ActiveIntronRegion 0 6.85 8.82 7.46 7.70 13.59 5.42 36.21 27.85 13.86 16.70 1.54 4.77 6.43 0.97 0.96 11.76 12.75 9.86 4.27 15.29 3.29 0.45 3.63 18 I1_AR6 ActiveIntronRegion 0 2.12 4.07 3.72 1.87 17.94 1.83 27.07 10.05 5.35 6.12 0.00 1.28 0.00 0.00 2.90 5.61 13.81 11.57 3.19 11.19 4.82 0.00 4.68 19 I1_SR6 SilentIntronRegion 0 2.04 1.09 0.75 1.63 4.93 4.00 20.87 4.65 3.81 1.81 0.97 2.15 1.03 0.68 0.00 5.78 16.26 4.46 4.87 7.68 3.71 0.00 2.21 20 I1_AR9 ActiveIntronRegion 0 2.12 5.20 0.00 5.30 22.74 3.46 40.97 14.12 0.00 0.45 0.00 4.33 13.55 0.00 0.00 19.98 17.60 5.44 0.00 10.17 3.80 0.00 0.00 21 I1_AR10 ActiveIntronRegion 0 8.20 8.46 5.91 3.16 12.80 6.35 36.57 14.52 3.85 6.30 1.48 4.92 3.86 0.58 1.23 5.97 11.31 5.09 2.83 10.24 5.20 0.82 2.47 22 I1_AR11 ActiveIntronRegion 0 17.13 12.64 5.00 6.15 11.64 1.10 33.73 12.47 7.64 5.84 0.58 1.70 1.16 0.05 0.91 5.72 5.60 6.00 1.83 7.41 4.10 1.33 1.66 23 I1_AR1 ActiveIntronRegion 0 9.34 10.77 8.29 10.90 0.94 9.17 43.38 9.56 6.61 10.32 1.93 0.00 0.00 0.00 0.00 11.89 9.90 17.93 0.37 8.39 11.02 0.00 13.13 24 I1_AR2 ActiveIntronRegion 0 12.70 9.83 8.58 8.86 2.68 7.64 39.72 8.64 6.18 11.47 1.93 0.00 0.00 0.00 0.00 11.89 9.90 17.86 0.00 6.38 11.02 0.00 14.68 25 I1_AR4 ActiveIntronRegion 0 8.18 3.51 5.96 13.94 20.80 3.67 34.36 4.56 4.94 8.65 0.00 0.00 6.18 1.62 2.51 3.78 16.35 8.48 1.59 11.12 2.80 0.00 2.94 26 I1_AR5 ActiveIntronRegion 1 3.99 2.77 3.93 11.77 16.78 4.00 40.59 3.81 5.59 7.04 1.85 1.18 4.69 0.26 1.05 4.39 18.38 10.58 2.82 4.50 0.90 0.00 3.14 27 I1_AR6 ActiveIntronRegion 0 3.31 4.83 2.57 11.29 13.21 4.58 38.11 6.05 6.29 3.23 2.36 3.92 9.23 0.00 0.00 0.00 1.65 12.93 0.00 3.39 0.00 0.00 4.13 28 I1_AR11 ActiveIntronRegion 0 5.47 1.88 1.79 6.32 5.87 1.83 44.50 12.06 2.80 5.18 1.13 7.92 7.66 0.40 0.00 3.33 9.90 5.23 0.70 11.36 0.86 0.00 0.00 29 I1_AR14 ActiveIntronRegion 0 7.41 9.15 2.74 2.03 21.41 5.50 37.73 11.59 2.76 1.71 0.00 0.00 0.00 0.67 1.02 2.97 4.95 5.04 3.19 2.13 1.10 0.00 0.00 30 I1_AR17 ActiveIntronRegion 0 4.23 2.03 1.23 2.73 5.35 0.00 15.23 39.75 17.09 15.29 1.93 0.00 0.00 0.00 0.00 17.83 6.60 3.70 0.00 10.64 11.02 0.00 5.38 31 I1_AR18 ActiveIntronRegion 0 22.39 11.39 6.47 2.65 16.00 1.96 28.62 21.29 10.76 19.16 0.24 1.35 3.67 0.17 0.93 4.37 4.11 2.07 2.43 10.25 1.33 0.00 1.30 32 ER2a ExonRegion 0 0.00 1.55 0.11 0.04 2.04 0.00 2.94 0.03 0.00 0.00 0.03 0.00 5.46 0.87 0.00 0.00 0.05 0.00 0.00 1.62 0.00 0.00 0.57 33 E2a_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 34 I2_SR3 SilentIntronRegion 0 12.69 8.50 2.94 5.06 8.83 0.83 13.87 9.61 3.24 4.91 0.24 1.81 1.89 0.19 0.27 4.79 4.57 9.05 2.73 4.66 3.22 0.16 1.48 35 ER3a ExonRegion 0 0.87 1.26 1.13 0.00 0.55 0.38 6.29 3.19 0.00 1.76 0.00 0.89 0.00 0.00 0.00 1.23 1.36 2.27 1.32 2.64 2.26 0.00 1.21 36 E3a_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.02 0.00 1.02 0.00 2.19 2.37 0.00 0.00 1.83 0.00 1.14 0.00 0.00 0.00 0.00 0.00 38 E4a_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 40 ER5b ExonRegion 0 0.14 0.53 0.25 0.34 0.04 0.60 0.98 1.28 1.13 1.54 1.62 0.24 4.11 1.27 0.20 1.95 1.81 3.85 2.62 1.14 4.92 1.77 2.49 41 E5_Ac KnownBoundary 0 0.00 2.83 0.00 0.00 0.00 0.00 5.39 0.00 0.00 0.00 0.00 0.00 12.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 42 ER5c ExonRegion 1 11.17 17.29 21.80 28.72 16.72 56.52 30.91 120.44 91.04 143.35 164.27 16.06 16.61 92.48 15.80 83.92 173.94 241.95 166.17 148.23 238.15 121.13 115.96 43 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.24 3.25 0.00 0.00 0.00 0.00 0.00 0.00 9.35 2.32 0.00 0.00 0.00 6.25 4.35 45 E5a_E8a KnownJunction 1 10.52 22.04 26.26 21.58 35.74 75.81 24.51 106.63 82.15 136.06 163.30 0.00 6.82 98.59 4.45 33.67 120.62 223.31 96.94 136.02 221.16 98.52 65.56 46 I5_AR1 ActiveIntronRegion 0 19.51 9.74 6.92 6.25 19.56 7.65 34.94 18.28 4.01 11.93 1.05 1.83 2.36 0.66 1.41 5.08 6.38 5.15 3.98 9.57 2.31 0.63 1.53 47 I5_SR2 SilentIntronRegion 0 13.47 4.94 1.82 4.02 11.70 6.46 23.84 2.50 0.00 1.74 0.00 0.00 6.03 0.56 3.15 2.89 0.00 2.23 1.55 5.17 0.00 0.00 1.43 48 I5_AR2 ActiveIntronRegion 0 45.59 14.93 11.18 18.23 39.52 9.73 45.05 36.15 6.46 14.92 3.15 1.08 1.01 0.68 3.22 16.73 11.85 18.23 7.02 16.67 2.88 1.36 2.88 49 ER6a ExonRegion 0 0.00 0.00 0.02 0.00 0.00 0.00 1.74 0.00 0.00 0.03 0.00 0.00 0.18 0.00 0.00 1.92 2.13 0.07 4.11 1.54 0.00 0.00 1.90 50 E6a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.11 4.24 2.48 0.00 0.00 0.00 0.84 0.00 2.44 5.38 0.75 0.00 0.00 0.11 1.75 1.33 52 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.01 1.07 2.37 0.00 0.00 3.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 ER8a ExonRegion 0 10.67 31.37 24.19 18.43 68.31 218.08 97.97 98.29 89.51 123.46 101.97 25.76 20.38 82.48 14.86 89.95 124.09 240.71 100.75 121.42 211.97 94.71 100.13 54 E8a_E10a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 4.89 0.00 2.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.71 3.20 0.00 0.00 0.00 55 E8a_E11a KnownJunction 1 20.60 87.55 25.28 11.55 48.81 194.43 64.30 71.43 87.53 73.82 87.29 0.00 6.82 99.24 10.14 57.51 88.45 140.07 33.88 124.57 147.65 61.29 29.62 56 ER8b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 2.13 2.20 0.00 0.00 57 ER9a ExonRegion 0 1.83 1.76 0.39 0.44 6.94 0.40 6.29 0.00 1.60 1.08 0.42 1.47 0.00 0.59 0.44 0.64 0.74 2.58 1.38 3.17 7.64 0.90 0.63 58 E9a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 E10_Aa NovelBoundary 0 33.56 9.41 0.00 12.49 0.00 8.52 41.91 9.12 6.39 10.45 2.68 5.85 0.00 0.00 0.00 0.00 0.00 6.72 4.42 3.26 2.66 0.00 0.00 60 ER10a ExonRegion 0 1.03 0.00 0.00 0.15 2.68 3.67 0.00 1.38 0.00 1.02 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 4.53 1.51 0.00 0.00 0.00 61 ER11a ExonRegion 1 22.62 37.10 23.10 15.16 18.41 65.55 21.04 56.39 64.48 80.63 71.32 3.98 15.54 49.35 7.88 32.18 71.22 137.22 41.38 87.88 153.26 35.29 29.78 62 E11_Da KnownBoundary 1 27.71 68.94 24.39 34.06 45.33 73.20 32.55 86.87 56.45 90.31 36.22 13.50 18.83 49.74 10.14 25.72 88.92 170.83 28.52 74.27 118.24 57.31 77.60 63 ER11b ExonRegion 1 18.81 60.55 55.19 55.71 69.38 201.67 109.52 132.82 116.64 131.26 136.96 10.43 15.19 92.94 10.09 69.45 145.80 334.94 110.55 197.24 199.76 98.69 88.60 64 E11b_E12a KnownJunction 1 22.89 69.26 60.82 80.21 142.02 312.15 155.14 162.94 161.98 185.80 207.26 18.31 39.77 139.91 18.54 121.76 162.69 386.22 182.03 269.79 246.00 102.75 132.06 65 Ix_SR3 SilentIntronRegion 0 3.63 1.18 4.86 5.86 11.43 17.38 10.80 7.32 7.60 11.38 7.97 2.41 3.42 5.06 2.07 9.04 12.80 23.07 1.33 11.27 18.42 4.70 8.02 66 Ix_SR2 SilentIntronRegion 0 7.63 5.38 7.00 3.43 17.52 27.15 18.32 22.49 8.48 10.64 10.68 4.71 2.56 9.62 5.28 12.11 10.76 20.61 3.90 11.87 21.03 9.51 14.80 67 Ix_SR1 SilentIntronRegion 0 9.43 6.56 6.13 9.08 8.45 37.89 35.99 17.39 11.01 4.84 7.34 5.20 2.44 6.31 2.69 5.38 3.65 6.15 0.07 8.99 3.16 11.42 7.25 68 E12_Aa NovelBoundary 0 7.41 18.35 8.04 6.96 72.75 45.94 72.74 29.00 30.84 12.76 5.21 0.00 0.00 13.42 14.09 10.51 13.84 13.18 19.20 8.12 33.24 6.25 0.00 69 ER12a ExonRegion 1 35.57 73.18 37.79 44.87 90.46 210.24 132.03 111.76 93.83 110.40 87.11 13.20 12.18 48.80 5.94 56.81 55.74 299.01 91.50 107.55 96.22 52.86 72.33 70 E12_Da KnownBoundary 0 19.11 37.43 21.47 9.69 15.11 46.56 52.11 36.39 23.64 26.86 4.90 6.15 0.00 2.47 0.00 10.60 8.88 101.44 8.28 3.07 2.29 2.94 11.44 71 E12_Db KnownBoundary 0 9.56 26.25 8.63 14.22 11.80 69.34 32.33 48.47 35.59 37.15 14.32 5.85 0.00 7.77 0.00 10.85 11.78 77.02 4.42 20.45 16.00 16.72 29.71 72 ER12b ExonRegion 0 38.10 77.28 32.47 29.30 53.51 172.38 103.27 91.61 59.29 64.80 15.46 8.66 4.69 8.12 2.90 26.75 16.50 204.18 9.56 37.23 33.06 13.54 32.30 73 ER12c ExonRegion 1 31.57 102.56 40.62 53.81 69.89 247.02 119.51 132.77 89.85 97.81 79.12 8.74 10.47 58.44 5.51 45.82 77.69 227.55 86.18 129.47 115.84 89.65 51.06 74 E12_Dc KnownBoundary 1 39.64 164.25 58.51 85.97 135.31 335.83 178.59 181.38 100.98 120.99 78.02 13.50 45.13 106.78 17.06 120.99 41.14 283.50 162.64 168.36 93.59 179.23 136.84 75 ER12d ExonRegion 0 103.63 171.96 109.42 113.59 297.58 346.83 278.20 293.49 144.49 198.16 103.95 43.70 51.92 60.98 17.94 56.28 87.46 94.92 81.40 153.81 61.74 165.73 67.58 76 ER12e ExonRegion 0 0.47 8.81 1.77 5.45 9.22 12.43 4.12 9.03 2.33 7.26 0.43 2.89 0.52 0.00 0.97 0.00 0.73 0.82 0.00 5.67 0.00 2.55 0.00