Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SEC61G Gene 0 102.26 152.53 233.88 170.08 334.20 173.39 147.54 157.74 83.11 144.74 282.50 150.27 82.71 201.46 406.01 246.63 209.02 87.42 172.16 161.06 100.58 338.57 178.23 2 415949 Transcript 0 1.37 0.76 0.82 0.94 1.76 1.54 2.03 1.40 1.33 1.35 0.64 1.72 0.36 1.10 1.39 1.67 1.22 0.43 2.56 0.99 0.88 0.77 0.54 3 352861 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 395535 Transcript 0 65.61 79.31 2.45 0.00 5.35 1.83 3.97 1.73 3.71 0.00 7.73 8.66 0.00 8.12 0.00 2.97 13.20 0.00 0.00 8.51 0.00 4.17 0.00 5 480303 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 461536 Transcript 0 0.00 0.00 1.66 1.47 0.00 0.00 2.25 0.00 1.22 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 460484 Transcript 0 3.28 3.58 4.11 4.42 6.45 7.69 11.42 3.89 2.79 3.18 6.51 7.33 8.37 1.56 2.44 2.71 2.34 0.40 0.82 0.89 0.76 4.87 2.40 8 450622 Transcript 0 6.06 7.35 2.25 4.51 2.78 8.29 4.52 2.60 3.62 9.17 6.42 0.00 0.90 9.32 14.22 12.74 11.11 11.91 5.52 8.26 5.41 6.76 6.40 9 ER1a ExonRegion 0 4.11 2.27 1.52 2.81 4.46 4.61 5.15 0.94 1.09 2.37 1.07 5.15 1.07 3.31 4.16 3.30 3.66 1.28 5.31 2.96 1.83 2.32 1.63 10 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER2a ExonRegion 0 0.00 0.00 0.95 0.00 0.81 0.00 0.95 1.01 1.72 1.68 0.85 0.00 0.00 0.00 0.00 1.70 0.00 0.00 2.36 0.00 0.82 0.00 0.00 12 E2_Ab KnownBoundary 0 0.00 0.00 1.18 0.00 0.00 0.00 4.46 0.00 1.45 0.00 2.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 0.00 0.00 13 E2_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 7.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E2_Ad KnownBoundary 0 18.15 9.93 1.83 0.00 17.15 8.69 17.93 0.00 0.00 1.67 8.05 0.00 0.00 32.14 26.70 21.62 4.77 0.00 4.61 6.52 6.30 21.62 8.71 15 ER2b ExonRegion 0 1.69 0.81 3.43 0.00 5.35 0.00 2.65 0.00 1.73 2.29 3.09 0.00 0.00 1.30 1.16 1.19 1.32 2.22 9.56 0.00 2.20 2.50 0.00 16 ER2c ExonRegion 1 62.84 61.48 31.77 19.34 137.08 105.94 87.23 23.27 15.30 36.44 132.03 0.00 0.00 50.29 108.91 141.18 64.62 26.51 40.06 65.63 52.21 142.88 75.56 17 E2_Ae KnownBoundary 1 392.14 347.24 34.39 20.64 846.94 676.71 519.13 18.20 9.43 23.05 756.93 0.00 0.00 176.94 890.91 743.31 371.67 157.48 249.61 365.54 258.54 824.14 413.50 18 ER2d ExonRegion 1 480.08 470.59 339.07 218.06 1348.58 1017.00 912.68 192.06 112.83 194.43 909.71 4.33 0.00 497.55 1299.25 978.88 610.67 118.80 439.58 452.31 433.87 1064.92 578.35 19 E2_Af NovelBoundary 1 913.87 938.06 561.98 382.57 2603.48 1633.32 1629.82 336.15 198.00 308.46 1045.58 0.00 0.00 684.51 1574.64 1378.53 983.26 261.78 865.34 730.45 601.90 1519.88 966.65 20 ER2e ExonRegion 1 886.42 956.93 633.29 451.54 2408.01 1665.55 1465.05 378.96 219.00 366.08 1276.20 5.68 5.28 1070.90 2360.89 1608.29 1111.16 178.65 796.94 865.56 678.60 1843.13 1057.74 21 E2a_E3a KnownJunction 1 169.96 204.57 141.69 106.38 547.62 156.33 175.24 101.12 30.50 89.48 111.13 5.70 20.13 271.71 468.76 234.90 245.44 67.53 128.19 206.32 84.02 199.93 167.99 22 E2b_E3a KnownJunction 1 1855.22 2054.11 1491.64 1140.41 3938.54 1933.77 1548.26 919.36 482.87 834.71 1269.11 103.83 304.04 2460.84 3709.14 2027.76 1567.83 409.89 1122.86 1483.45 751.03 2612.04 1686.52 23 E2b_E4a KnownJunction 0 0.00 0.00 1.66 1.47 0.00 0.00 2.25 0.00 1.22 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER2f ExonRegion 1 1379.55 1579.79 1100.63 799.60 3527.04 2181.85 1842.03 673.41 351.51 630.97 1520.42 43.73 114.20 1924.18 3380.68 2125.96 1650.78 268.85 1093.06 1340.00 847.33 2680.14 1567.14 25 ER2g ExonRegion 1 1223.88 1480.45 1235.79 926.76 2515.20 1475.29 1134.97 768.73 432.91 727.42 1155.39 112.57 302.51 2039.49 3557.66 1722.35 1380.60 312.27 966.76 1215.42 618.69 2354.38 1339.11 26 ER2h ExonRegion 0 8.71 14.69 4.50 9.03 5.55 11.25 9.05 3.63 2.98 10.20 12.84 0.00 1.80 16.17 28.43 25.49 13.89 23.82 11.04 13.51 5.01 13.53 12.80 27 E2c_E3a KnownJunction 0 3.41 0.00 0.00 0.00 0.00 5.34 0.00 1.56 4.25 8.14 0.00 0.00 0.00 2.47 0.00 0.00 8.32 0.00 0.00 3.00 5.81 0.00 0.00 28 ER3a ExonRegion 0 481.55 748.48 1217.16 888.64 962.60 430.50 359.40 808.78 466.69 772.61 1237.69 414.46 413.61 856.04 1626.62 928.05 1084.34 358.20 683.99 717.66 586.54 1083.78 734.51 29 E3a_E4a KnownJunction 1 18.89 84.66 1039.17 533.13 391.34 140.09 124.14 596.07 333.01 754.74 2071.68 904.79 231.48 375.01 919.71 234.98 1396.16 175.60 283.49 482.51 915.17 473.52 194.20 30 E4_Aa NovelBoundary 1 0.00 9.67 15.52 10.16 12.14 0.00 17.00 20.74 11.78 8.73 18.90 32.56 55.19 19.66 16.56 10.42 0.00 0.00 4.52 3.26 2.72 16.78 3.76 31 ER4a ExonRegion 0 12.78 71.73 1574.65 1109.67 270.25 104.46 71.61 1093.12 559.94 1014.75 2297.02 834.03 350.16 1576.28 3024.99 1893.56 1534.79 698.14 1495.14 1209.52 740.53 2608.26 1324.91 32 E4_Da KnownBoundary 1 3.70 3.22 10.29 15.82 11.71 5.56 20.80 6.70 14.64 4.59 4.58 49.67 36.85 5.18 0.00 0.00 3.83 10.24 4.80 14.19 0.00 11.63 11.61 33 E4a_E5a KnownJunction 1 9.78 128.60 1701.36 1358.04 667.32 232.48 118.75 1113.19 497.88 848.46 622.05 642.51 443.32 1447.59 3919.66 2279.06 344.18 893.36 1624.52 857.32 77.78 2754.53 1672.69 34 ER4b ExonRegion 1 9.72 10.90 13.82 18.24 24.93 23.91 27.84 15.69 10.23 8.59 16.30 45.87 29.84 5.38 7.03 6.20 16.49 4.56 1.99 11.24 4.61 15.08 4.25 35 E4_Db KnownBoundary 0 3.26 16.12 17.56 17.48 33.87 9.54 36.83 11.62 15.62 10.77 8.63 36.76 19.80 4.94 0.00 11.96 25.90 3.32 0.00 6.52 11.06 19.29 6.83 36 ER4c ExonRegion 1 3.33 11.18 17.56 15.56 19.99 14.91 26.53 16.09 12.94 8.06 20.57 50.45 34.41 4.67 1.07 9.01 10.51 2.90 6.50 3.47 5.19 15.39 7.34 37 E4_Dc KnownBoundary 0 3.63 0.00 20.08 16.58 20.03 5.45 10.29 12.03 16.35 5.64 21.22 24.61 12.82 14.60 0.00 15.55 20.29 2.53 0.00 6.52 5.25 10.23 11.87 38 ER4d ExonRegion 0 3.28 3.58 4.11 4.42 6.45 7.69 11.42 3.89 2.79 3.18 6.51 7.33 8.37 1.56 2.44 2.71 2.34 0.40 0.82 0.89 0.76 4.87 2.40 39 Ix Intron 0 13.11 12.05 18.53 17.87 26.19 12.02 24.13 25.44 14.38 19.33 18.40 46.60 52.91 9.15 11.43 5.87 8.00 3.06 7.15 9.93 3.36 20.20 10.55 40 Ix_SR1 SilentIntronRegion 0 13.16 12.09 18.59 17.93 26.28 12.06 24.22 25.53 14.43 19.40 18.46 46.77 53.09 9.19 11.47 5.89 8.03 3.08 7.18 9.97 3.38 20.28 10.58 41 I4 Intron 0 26.55 19.13 25.00 22.60 27.27 14.66 23.04 17.36 7.21 9.73 11.61 29.14 23.30 7.41 10.84 5.59 5.52 4.41 6.33 7.12 2.99 10.67 3.99 42 I4_SR1 SilentIntronRegion 0 23.60 18.06 19.98 20.42 29.61 16.11 26.26 15.29 5.70 7.76 9.50 29.04 26.64 7.78 8.86 4.61 4.40 4.43 6.00 5.99 3.08 11.69 3.47 43 I4_AR1 ActiveIntronRegion 0 32.02 21.17 34.21 26.68 23.19 12.12 17.35 21.20 9.98 13.37 15.50 29.51 17.41 6.77 14.46 7.40 7.58 4.41 6.95 9.19 2.86 8.87 4.96 44 ER5a ExonRegion 1 440.18 762.57 574.00 414.92 2018.87 939.87 770.07 375.06 168.01 317.86 444.46 758.74 329.42 267.76 737.68 382.84 246.82 220.72 264.97 238.08 49.03 739.90 291.10 45 ER5b ExonRegion 0 691.04 550.08 23.28 15.33 83.62 47.68 28.80 22.90 15.44 26.67 92.78 95.25 39.87 43.04 91.39 26.75 52.81 2.31 3.98 42.02 4.41 46.88 2.94 46 ER5c ExonRegion 0 293.14 234.88 8.58 4.77 34.78 24.76 12.58 9.51 8.03 10.32 28.99 41.13 9.38 17.05 15.96 8.92 24.76 0.92 1.59 20.21 0.00 11.46 1.47 47 ER5d ExonRegion 0 65.61 79.31 2.45 0.00 5.35 1.83 3.97 1.73 3.71 0.00 7.73 8.66 0.00 8.12 0.00 2.97 13.20 0.00 0.00 8.51 0.00 4.17 0.00 48 IG38_SR3 SilentIntergenicRegion 0 2.73 10.07 4.51 12.87 6.91 5.64 11.16 4.40 15.63 6.83 0.82 5.24 2.55 0.85 1.03 1.20 0.85 5.74 5.33 8.05 0.85 1.32 3.17 49 IG38_AR2 ActiveIntergenicRegion 0 3.37 18.26 5.34 14.43 10.89 9.48 16.24 6.90 31.92 9.69 2.75 5.58 2.70 1.54 0.59 0.85 1.19 7.51 4.11 7.24 0.96 5.28 2.31