Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C7orf20 Gene 0 12.05 11.33 40.77 13.39 12.50 36.88 11.03 21.12 35.29 22.91 19.59 9.39 8.37 34.15 22.99 18.07 16.32 41.96 27.05 28.39 22.44 6.50 10.30 2 265857 Transcript 0 9.92 16.07 87.48 43.87 10.21 26.35 26.41 45.06 47.49 56.44 153.52 22.25 4.43 162.57 112.01 145.73 80.79 122.54 91.31 62.55 44.87 30.31 37.81 3 412734 Transcript 0 1.90 4.85 9.86 6.97 3.68 6.36 3.17 5.12 11.28 7.35 10.05 1.98 2.68 14.12 8.27 4.98 7.72 13.27 13.97 8.68 6.08 1.74 2.11 4 407192 Transcript 0 16.94 19.91 46.43 16.31 28.68 63.64 15.79 26.87 42.98 26.22 17.16 18.41 16.38 38.26 28.71 18.34 17.23 50.32 38.30 32.38 29.69 7.92 13.02 5 441491 Transcript 0 17.56 5.72 31.02 1.73 7.56 16.18 2.08 9.00 2.37 3.79 2.26 5.55 7.14 4.77 4.45 7.69 3.93 17.16 3.76 3.13 6.12 0.00 0.00 6 426056 Transcript 0 0.48 0.92 5.17 1.38 0.00 1.47 0.90 0.88 3.36 2.91 2.19 0.40 0.97 3.93 3.20 0.67 1.12 7.28 1.81 8.68 0.75 0.24 0.67 7 483469 Transcript 0 0.34 0.00 7.18 2.26 5.83 3.08 5.46 1.98 1.26 2.85 4.59 0.00 12.23 18.39 13.16 4.88 1.30 5.94 9.16 9.69 0.00 2.53 4.61 8 464468 Transcript 0 21.29 3.56 29.04 15.59 10.48 11.00 9.39 22.22 35.85 27.76 33.99 4.28 2.68 37.59 23.00 23.81 21.53 46.04 8.91 41.84 4.22 1.54 16.68 9 ER1a ExonRegion 0 10.42 13.79 29.67 13.16 4.21 19.38 16.39 13.86 17.72 22.07 98.15 2.19 2.03 65.02 54.04 48.96 53.86 40.00 36.36 27.51 32.36 8.75 16.12 10 E1_Da NovelBoundary 0 0.00 0.00 1.57 0.00 0.00 0.00 0.00 2.51 1.42 1.56 2.68 0.00 0.00 2.35 4.45 4.36 0.00 10.61 17.60 0.00 5.50 2.27 4.35 11 E1a_E3c KnownJunction 0 9.41 18.35 145.29 74.58 16.21 33.33 36.43 76.27 77.26 90.82 208.90 42.31 6.82 260.11 169.97 242.50 107.71 205.07 146.26 97.60 57.39 51.86 59.50 12 ER2a ExonRegion 0 3.81 6.22 14.67 8.35 7.36 12.72 6.35 10.24 17.47 11.72 8.94 3.96 5.35 28.24 16.55 9.97 15.45 21.41 17.97 17.36 12.16 3.48 4.23 13 E2_Da NovelBoundary 0 31.86 15.19 33.80 17.25 18.68 37.31 11.88 27.15 35.45 22.08 41.01 12.00 6.66 38.02 31.65 4.36 17.77 34.20 28.05 38.41 24.03 8.94 8.28 14 E2a_E3c KnownJunction 0 0.00 3.49 5.06 5.59 0.00 0.00 0.00 0.00 5.09 2.98 11.16 0.00 0.00 0.00 0.00 0.00 0.00 5.14 9.98 0.00 0.00 0.00 0.00 15 Ix Intron 0 16.69 18.05 39.41 17.28 21.51 49.87 17.68 24.47 46.15 22.11 18.12 21.91 22.44 44.28 21.71 19.87 19.32 40.06 40.88 34.66 30.38 9.88 11.27 16 Ix_SR1 SilentIntronRegion 0 18.93 20.38 35.94 18.43 23.52 46.67 20.60 24.82 42.79 20.59 16.45 24.78 27.46 43.43 21.11 17.59 17.93 34.61 43.35 33.86 28.01 10.47 10.99 17 Ix_AR1 ActiveIntronRegion 0 11.99 13.17 46.81 14.91 17.33 56.71 11.58 23.77 53.34 25.38 21.70 15.92 11.91 46.15 23.03 24.70 22.27 51.61 35.76 36.40 35.42 8.66 11.89 18 E3_Aa NovelBoundary 0 7.48 17.76 89.23 30.50 26.66 52.36 34.01 49.86 85.21 38.22 17.43 11.70 6.82 38.73 40.67 40.93 34.88 96.38 68.99 55.35 39.48 16.90 20.40 19 ER3a ExonRegion 0 10.26 12.48 53.49 18.22 14.58 68.03 13.94 34.40 60.06 30.81 20.92 13.67 8.75 49.39 24.53 17.91 22.12 65.11 45.36 39.73 40.79 11.01 15.66 20 E3_Ab KnownBoundary 0 14.30 14.54 64.46 32.00 4.33 73.76 3.44 39.31 50.98 39.54 16.53 40.96 12.66 33.73 15.20 23.50 16.92 56.50 44.52 37.71 25.51 5.94 4.01 21 ER3b ExonRegion 0 13.73 12.26 64.66 20.52 19.63 59.03 12.49 35.21 54.41 38.14 25.27 12.17 11.45 44.65 19.25 18.07 22.57 64.39 33.01 40.73 35.41 10.27 14.06 22 E3_Da KnownBoundary 0 19.78 20.00 53.25 10.62 25.21 83.76 13.38 35.57 59.58 27.59 12.42 0.00 0.00 42.09 22.75 8.20 8.79 79.59 17.51 49.98 25.21 8.94 19.21 23 E3a_E3c KnownJunction 0 17.56 5.72 31.02 1.73 7.56 16.18 2.08 9.00 2.37 3.79 2.26 5.55 7.14 4.77 4.45 7.69 3.93 17.16 3.76 3.13 6.12 0.00 0.00 24 ER3c ExonRegion 0 21.51 20.82 73.53 19.82 23.29 66.05 17.55 35.85 65.17 38.68 20.90 19.90 16.93 52.39 35.47 28.20 19.67 71.07 47.26 48.90 39.45 10.66 17.53 25 E3_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER3d ExonRegion 0 13.68 13.30 130.89 48.49 13.52 58.28 20.59 48.40 68.20 62.43 70.75 12.43 16.60 85.33 65.43 80.82 52.05 130.98 55.50 51.53 47.01 14.93 21.76 27 E3b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER4a ExonRegion 0 7.98 9.50 90.77 33.64 14.55 41.31 26.59 36.23 43.36 35.69 65.06 9.98 2.75 67.32 66.76 28.20 55.43 41.62 34.92 39.15 38.35 10.95 9.38 29 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E5_Aa NovelBoundary 0 0.00 3.35 16.94 1.50 4.07 8.06 3.97 3.49 14.35 10.53 6.90 0.00 0.00 4.89 8.90 0.00 8.98 24.95 13.08 13.68 2.72 2.76 0.00 31 ER5a ExonRegion 0 0.96 1.84 10.35 2.76 0.00 2.94 1.80 1.75 6.71 5.83 4.38 0.81 1.94 7.86 6.40 1.35 2.24 14.56 3.61 17.36 1.50 0.47 1.33 32 E5_Da NovelBoundary 0 0.00 3.16 11.00 3.23 0.00 7.84 6.18 4.15 13.80 18.08 2.68 0.00 0.00 23.43 9.64 4.36 0.00 21.76 3.48 17.96 0.00 0.00 0.00 33 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER6a ExonRegion 0 21.69 19.81 29.94 21.03 5.69 31.08 18.22 13.78 11.00 10.87 6.01 4.33 0.12 34.22 33.65 21.47 4.37 38.57 23.36 11.15 2.45 10.72 10.32 35 E6_Ab KnownBoundary 0 62.75 28.42 47.07 26.10 38.37 81.20 20.01 22.63 35.47 18.96 36.54 0.00 0.00 8.83 11.87 39.31 4.58 59.20 7.72 5.50 4.76 2.69 7.85 36 ER6b ExonRegion 0 36.94 10.17 1.23 0.66 8.35 44.51 25.44 0.37 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 Ix_AR1 ActiveIntronRegion 0 2.88 4.52 13.47 5.98 4.73 7.35 4.56 4.63 14.50 13.02 7.17 4.51 3.32 13.78 8.94 3.39 4.93 23.79 7.42 26.59 1.42 0.45 1.70 39 Ix_AR2 ActiveIntronRegion 0 2.42 4.89 10.41 6.19 0.25 0.52 3.82 1.12 6.39 6.58 2.48 1.15 0.00 6.98 11.62 2.01 2.49 26.71 8.14 19.77 1.90 0.00 1.64 40 Ix_SR3 SilentIntronRegion 0 7.76 6.01 10.97 6.23 3.93 3.39 3.78 5.73 10.96 7.66 5.10 4.38 9.89 10.30 7.25 5.57 3.13 22.53 6.19 27.94 1.76 0.12 2.68 41 ER7a ExonRegion 0 23.43 8.15 1.92 1.22 4.32 18.92 8.83 1.02 0.00 0.69 0.78 0.00 0.00 2.40 0.82 0.00 0.00 1.16 0.00 0.85 0.00 0.00 0.00 42 E7_Da NovelBoundary 0 12.82 9.21 16.00 7.26 4.07 2.56 0.00 20.33 11.00 16.04 12.11 5.25 5.68 4.94 5.56 3.85 0.00 30.51 8.28 12.78 2.41 6.25 3.50 43 E7b_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 ER7b ExonRegion 0 20.28 0.51 4.90 2.73 2.68 2.14 0.99 1.73 0.21 3.44 0.32 0.00 0.00 3.25 0.73 1.98 0.00 3.70 1.33 0.53 0.00 0.00 0.73 45 Ix_SR1 SilentIntronRegion 0 7.37 7.37 20.27 6.43 4.97 6.10 3.79 7.16 10.61 9.18 15.13 5.62 1.89 14.26 18.36 4.03 8.95 14.52 8.94 22.65 0.34 4.75 7.17 46 E8_Ab NovelBoundary 0 40.97 18.48 22.41 6.76 8.06 36.80 20.62 13.39 8.13 11.90 49.07 5.40 0.00 26.49 13.35 31.36 29.45 30.14 32.47 24.74 12.79 3.00 7.51 47 ER8a ExonRegion 0 23.37 5.57 5.38 3.97 1.98 3.11 1.32 2.25 2.47 5.34 5.29 0.00 0.00 8.19 7.19 8.92 2.15 5.38 4.57 2.13 0.00 0.00 2.94 48 ER8b ExonRegion 0 5.74 1.50 12.07 4.68 4.17 3.06 2.20 7.63 7.21 8.12 12.11 0.00 5.80 13.08 14.41 11.16 8.84 11.98 4.27 17.74 2.78 1.50 2.24 49 E8_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 ER8c ExonRegion 0 0.34 0.00 7.18 2.26 5.83 3.08 5.46 1.98 1.26 2.85 4.59 0.00 12.23 18.39 13.16 4.88 1.30 5.94 9.16 9.69 0.00 2.53 4.61 52 E8_Db NovelBoundary 0 25.12 6.71 29.69 16.08 40.41 22.09 12.23 7.43 26.36 5.91 7.63 0.00 19.48 47.50 27.32 12.13 0.00 36.85 17.79 36.18 5.93 12.19 3.84 53 ER9a ExonRegion 0 4.60 2.73 22.09 12.64 4.37 7.55 3.38 12.69 23.01 20.00 22.15 0.00 2.41 11.33 7.44 10.60 16.77 25.29 6.16 22.79 4.18 1.54 4.52 54 E9_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 E9a_E9b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 ER9b ExonRegion 0 21.29 3.56 29.04 15.59 10.48 11.00 9.39 22.22 35.85 27.76 33.99 4.28 2.68 37.59 23.00 23.81 21.53 46.04 8.91 41.84 4.22 1.54 16.68 57 E9_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 ER9c ExonRegion 0 6.29 3.05 19.55 12.04 4.01 3.87 4.23 19.11 26.49 20.29 26.58 0.06 0.39 14.73 11.85 10.03 12.70 19.17 1.15 21.51 1.71 2.84 0.77 59 E9b_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 Ix_SR1 SilentIntronRegion 0 3.01 2.75 9.42 3.15 4.08 4.28 4.77 4.66 15.14 8.04 8.71 5.56 2.86 10.92 8.60 5.98 2.94 13.58 4.98 27.18 0.00 0.62 3.31 61 ER10a ExonRegion 0 0.60 0.93 3.60 2.05 0.42 0.86 1.25 3.50 3.90 4.19 4.30 0.00 0.00 4.25 4.30 3.61 1.73 3.75 3.00 1.52 0.00 0.58 2.76 62 E10_Da KnownBoundary 0 35.41 9.60 44.97 26.17 23.34 25.84 9.89 22.92 30.67 16.71 36.06 5.25 6.49 27.19 16.19 4.19 8.79 41.00 15.81 22.95 7.97 3.12 8.11 63 ER10b ExonRegion 0 2.62 3.28 2.38 2.11 4.98 6.96 1.96 2.00 0.72 1.85 1.25 1.80 2.48 1.32 2.73 1.15 1.28 2.62 3.08 1.10 1.14 0.27 0.76 64 ER10c ExonRegion 0 19.05 26.44 12.25 10.90 48.16 56.85 15.89 10.37 3.71 9.18 9.66 21.65 23.45 12.99 26.11 8.92 9.90 14.78 22.30 8.51 8.81 2.08 5.87 65 IG14 Intergenic 0 3.51 6.59 25.92 3.80 3.28 5.61 3.00 3.90 13.14 8.07 7.31 1.42 2.42 7.92 7.20 2.47 1.79 15.39 4.59 24.45 0.08 0.75 0.95 66 IG14_SR1 SilentIntergenicRegion 0 3.51 6.63 26.04 3.82 3.29 5.64 3.02 3.91 13.20 8.11 7.35 1.43 2.44 7.96 7.24 2.48 1.79 15.46 4.60 24.56 0.08 0.76 0.96