Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC005083.1 Gene 0 8.51 0.35 0.21 0.57 3.18 2.39 1.42 1.60 0.63 0.19 30.51 30.47 15.58 51.07 76.71 34.65 48.58 0.00 0.00 0.00 0.00 0.00 0.00 2 439058 Transcript 0 0.21 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 6.19 0.00 0.47 8.28 10.73 4.16 2.97 0.00 0.00 0.00 0.00 0.00 0.00 3 430859 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 432971 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 453460 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 439446 Transcript 0 1.59 0.00 0.01 0.00 0.00 0.00 0.48 0.00 0.00 0.00 1.04 8.28 0.17 8.27 9.87 0.65 1.28 0.00 0.00 0.00 0.00 0.00 0.00 7 IG16 Intergenic 0 2.51 0.00 0.00 0.00 0.00 2.17 1.57 0.00 0.00 0.00 4.59 4.46 9.16 18.10 7.03 5.29 15.66 0.00 0.00 0.00 0.00 0.00 0.87 8 IG16_SR1 SilentIntergenicRegion 0 2.53 0.00 0.00 0.00 0.00 2.20 1.59 0.00 0.00 0.00 4.64 4.51 9.27 18.31 7.12 5.33 15.81 0.00 0.00 0.00 0.00 0.00 0.88 9 ER1a ExonRegion 0 0.21 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 6.19 0.00 0.47 8.28 10.73 4.16 2.97 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 1 8.47 0.00 0.00 0.00 4.91 0.00 0.00 0.00 0.00 0.00 43.49 0.00 4.69 55.76 49.32 50.53 23.66 0.00 0.00 0.00 0.00 0.00 0.00 11 E1_Da NovelBoundary 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.30 0.00 14.89 14.46 39.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E2a KnownJunction 0 7.48 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 39.96 0.00 0.00 55.68 64.16 71.61 53.95 0.00 0.00 0.00 0.00 0.00 0.00 13 E1a_E3a KnownJunction 1 28.60 0.00 0.00 0.00 7.22 0.00 2.12 0.00 0.00 0.00 89.60 11.25 8.28 61.57 65.39 104.16 57.97 0.00 0.00 0.00 0.00 0.00 0.00 14 ER1c ExonRegion 1 14.82 0.00 0.00 0.00 5.35 0.00 0.00 0.00 0.00 0.00 71.52 0.00 9.38 81.21 60.93 62.41 36.31 0.00 0.00 0.00 0.00 0.00 0.00 15 ER1d ExonRegion 1 20.65 0.00 0.00 0.00 5.35 0.00 1.19 0.00 0.00 0.00 89.38 3.43 9.38 102.94 102.74 108.53 59.64 0.00 0.00 0.00 0.00 0.00 0.00 16 I1_SR1 SilentIntronRegion 0 2.04 0.00 0.00 0.00 1.72 0.54 0.42 0.00 0.00 0.00 1.86 3.68 2.74 10.35 11.55 4.75 8.32 0.00 0.00 0.00 0.00 0.00 0.94 17 E2_Aa NovelBoundary 1 0.00 0.00 1.42 0.00 0.00 0.00 4.50 0.00 1.16 0.00 2.68 0.00 0.00 63.57 18.17 29.65 9.54 0.00 0.00 0.00 0.00 0.00 0.00 18 ER2a ExonRegion 0 3.22 0.00 0.00 0.00 0.00 1.24 0.47 0.00 0.00 0.00 15.19 15.92 5.81 37.10 64.73 26.71 71.83 0.00 0.00 0.00 0.00 0.00 0.00 19 E2a_E3a KnownJunction 0 6.82 0.00 0.00 0.00 0.00 7.95 0.00 0.00 0.00 0.00 18.43 43.66 7.14 19.60 59.09 15.47 51.52 0.00 0.00 0.00 0.00 0.00 0.00 20 I2 Intron 0 0.82 0.00 0.00 0.00 0.34 0.71 1.53 0.00 0.00 0.00 1.49 18.75 11.98 4.26 2.10 1.53 2.97 0.00 0.00 0.00 0.00 0.00 0.00 21 I2_SR1 SilentIntronRegion 0 0.82 0.00 0.00 0.00 0.35 0.71 1.54 0.00 0.00 0.00 1.50 18.85 12.07 4.29 2.12 1.54 2.99 0.00 0.00 0.00 0.00 0.00 0.00 22 E3_Aa NovelBoundary 1 0.00 0.00 0.00 0.00 8.66 11.19 0.00 1.93 1.79 0.00 0.00 36.16 13.64 10.71 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER3a ExonRegion 0 6.92 0.96 0.84 0.00 1.29 2.60 1.78 0.96 0.05 0.00 51.97 44.26 26.19 67.15 79.49 49.43 85.73 0.00 0.00 0.00 0.00 0.00 0.00 24 E3_Da NovelBoundary 1 0.00 0.00 0.00 0.00 0.00 0.00 2.12 2.18 0.00 0.00 4.79 43.36 0.00 9.89 0.00 12.39 18.61 0.00 0.00 0.00 0.00 0.00 0.00 25 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.21 6.30 0.00 12.66 19.78 16.06 31.23 0.00 0.00 0.00 0.00 0.00 0.00 26 E3a_E4c KnownJunction 0 3.11 0.00 0.00 0.00 4.33 8.69 1.72 1.93 0.00 0.00 64.54 18.31 19.15 58.10 43.51 45.80 96.49 0.00 0.00 0.00 0.00 0.00 0.00 27 I3 Intron 0 2.01 0.00 0.00 0.19 0.63 1.22 0.25 0.49 0.26 0.00 2.84 18.23 17.81 13.39 7.82 9.17 8.14 0.00 0.00 0.00 0.00 0.00 0.00 28 I3_SR1 SilentIntronRegion 0 2.01 0.00 0.00 0.19 0.64 1.22 0.25 0.49 0.26 0.00 2.85 18.27 17.84 13.42 7.84 9.18 8.16 0.00 0.00 0.00 0.00 0.00 0.00 29 ER4a ExonRegion 0 0.00 0.00 0.02 0.00 0.00 0.00 0.96 0.00 0.00 0.00 2.08 11.14 0.35 11.67 4.14 0.94 0.49 0.00 0.00 0.00 0.00 0.00 0.00 30 E4_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.00 0.00 5.37 6.15 0.00 27.02 0.00 3.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER4b ExonRegion 0 3.47 0.00 0.53 0.00 0.03 2.10 0.93 1.46 0.11 0.59 10.54 24.69 10.26 42.94 33.25 25.67 16.43 0.00 0.00 0.00 0.00 0.00 0.00 32 E4_Ac KnownBoundary 0 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 2.11 18.91 6.33 13.95 4.82 14.78 3.74 0.00 0.00 0.00 0.00 0.00 0.00 33 E4_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 2.32 0.00 0.00 7.59 5.07 8.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER4c ExonRegion 0 4.23 0.00 1.23 0.00 2.68 3.67 1.32 5.19 2.47 1.15 67.65 43.29 28.14 112.06 101.54 71.33 108.93 0.00 0.00 0.00 0.00 0.00 0.00 35 ER4d ExonRegion 0 9.38 0.00 0.26 1.81 6.66 4.10 2.36 3.29 1.91 0.69 35.99 38.44 13.63 75.06 115.88 47.35 51.13 0.00 0.00 0.00 0.00 0.00 0.00 36 E4b_E5a KnownJunction 0 10.52 0.00 0.00 0.00 0.00 6.93 0.00 7.15 1.45 0.00 27.74 6.30 0.00 77.29 136.72 36.06 53.02 0.00 0.00 0.00 0.00 0.00 0.00 37 I4_AR1 ActiveIntronRegion 0 5.81 0.00 0.00 0.00 4.50 0.00 0.74 1.01 0.30 0.00 3.25 7.33 9.43 8.35 7.49 2.19 12.37 0.00 0.00 0.00 0.00 0.00 0.00 38 E5_Aa NovelBoundary 0 13.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.50 0.00 2.00 12.60 0.00 10.07 8.90 10.42 4.68 0.00 0.00 0.00 0.00 0.00 0.00 39 ER5a ExonRegion 0 12.45 0.42 0.00 1.22 4.01 3.60 0.45 1.81 1.26 0.00 39.79 39.81 27.12 62.47 107.77 42.80 65.03 0.00 0.00 0.00 0.00 0.00 0.00 40 E5_Da KnownBoundary 0 21.49 3.09 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 34.59 25.36 35.87 59.74 96.42 35.46 87.24 0.00 0.00 0.00 0.00 0.00 0.00 41 ER5b ExonRegion 0 11.15 0.81 0.00 0.00 4.04 1.60 2.39 1.95 0.02 0.00 21.89 29.79 15.07 25.70 62.01 14.91 35.16 0.00 0.00 0.00 0.00 0.00 0.00 42 ER5c ExonRegion 0 5.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.76 8.66 0.43 7.23 25.58 2.97 3.60 0.00 0.00 0.00 0.00 0.00 0.00 43 ER5d ExonRegion 0 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 4.87 15.59 0.37 2.06 0.00 0.00 0.00 0.00 0.00 0.00