Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC005682.2 Gene 0 12.29 1.51 2.24 3.60 7.34 0.84 2.95 2.95 4.68 1.32 19.91 81.40 39.92 40.82 35.68 51.07 37.84 0.24 0.09 0.97 4.72 37.11 35.77 2 432668 Transcript 0 10.93 1.94 2.63 3.97 10.18 1.31 5.33 2.89 4.54 1.50 11.97 85.71 49.98 33.17 33.68 25.33 18.76 0.77 1.30 1.84 3.20 29.89 13.18 3 415611 Transcript 0 4.12 0.40 1.60 1.30 4.25 0.51 0.48 1.43 2.21 0.81 9.69 45.84 28.77 21.05 15.10 28.62 16.14 0.00 0.00 0.24 2.57 20.88 21.23 4 422542 Transcript 0 6.07 0.18 1.75 2.11 3.69 0.00 0.69 1.35 1.76 0.00 7.40 34.82 14.97 14.05 21.92 20.96 12.35 0.00 0.00 0.19 1.73 17.39 17.76 5 IG40_AR3 ActiveIntergenicRegion 0 5.08 0.79 1.06 1.13 3.68 0.97 0.47 0.96 3.25 0.08 9.22 20.88 12.64 40.11 18.32 38.58 18.16 0.00 0.00 0.00 2.74 15.65 30.64 6 IG40_SR6 SilentIntergenicRegion 0 9.50 0.47 1.16 2.26 10.94 4.30 4.22 2.72 8.19 1.43 16.72 104.69 42.56 63.67 39.03 49.63 30.99 0.00 0.00 0.00 3.42 39.75 39.32 7 IG40_AR4 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 3.37 15.37 26.68 5.80 11.12 6.24 0.00 0.00 0.00 0.00 3.90 2.77 8 ER1a ExonRegion 0 18.27 1.10 0.87 3.58 13.20 0.61 3.19 2.74 5.36 1.11 12.73 74.78 43.60 48.47 32.64 34.45 28.23 0.00 0.00 0.00 2.60 37.03 20.25 9 E1_Ab KnownBoundary 1 3.63 3.35 4.88 1.86 16.81 2.33 2.25 0.00 2.84 3.28 6.84 127.09 101.62 95.18 50.07 82.54 34.03 0.00 0.00 0.00 0.00 40.23 49.68 10 ER1b ExonRegion 0 18.75 6.97 3.85 2.34 13.38 1.83 6.24 3.46 4.06 2.29 73.45 126.79 92.46 142.23 99.47 145.21 111.76 0.53 0.00 4.26 2.52 32.15 80.13 11 E1_Da NovelBoundary 1 10.45 0.00 0.00 2.06 29.37 0.00 0.00 2.55 5.01 0.00 22.58 116.59 21.75 44.44 34.49 79.30 47.50 0.00 0.00 0.00 3.15 45.68 30.90 12 E1a_E2a KnownJunction 1 86.24 28.88 12.71 18.61 10.61 2.90 41.82 14.46 18.17 3.04 291.13 74.87 34.58 176.35 162.56 429.29 562.04 10.78 0.00 9.40 38.05 65.03 180.88 13 ER1c ExonRegion 0 41.88 17.14 6.78 9.73 11.18 1.96 23.03 4.75 7.06 3.07 180.17 90.92 64.32 195.76 147.96 251.78 328.79 3.43 0.00 6.99 21.41 43.75 113.06 14 I1 Intron 1 3.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.76 21.11 12.01 9.64 0.00 0.00 0.00 0.00 0.00 2.01 9.49 2.67 15 I1_SR1 SilentIntronRegion 1 3.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.83 21.89 12.36 9.99 0.00 0.00 0.00 0.00 0.00 2.08 9.72 2.77 16 I1 Intron 0 3.91 0.00 1.35 2.25 8.90 1.69 1.22 1.43 3.06 0.00 3.57 49.22 39.15 17.74 16.71 14.29 9.76 0.00 0.00 0.00 1.63 21.56 7.60 17 I1_SR1 SilentIntronRegion 0 3.94 0.00 1.36 2.27 8.96 1.71 1.23 1.44 3.08 0.00 3.60 49.58 39.44 17.87 16.84 14.39 9.83 0.00 0.00 0.00 1.64 21.72 7.65 18 E2_Aa NovelBoundary 0 6.96 0.00 1.77 5.86 0.00 0.00 1.68 2.34 8.07 0.00 20.16 23.26 13.31 11.71 10.01 7.09 34.41 0.00 0.00 0.00 2.90 23.33 27.91 19 ER2a ExonRegion 0 30.16 15.81 10.39 15.67 24.81 2.50 33.19 6.99 11.26 3.96 91.81 108.63 118.64 74.86 76.75 121.38 177.50 5.25 0.22 17.02 16.33 37.27 62.94 20 E2_Da KnownBoundary 1 18.15 18.62 8.43 11.22 23.68 2.56 19.48 6.28 11.20 3.12 6.63 124.69 96.26 22.90 44.13 10.68 22.25 6.80 0.00 0.00 2.97 35.21 0.00 21 E2a_E3a KnownJunction 0 0.00 0.00 1.39 0.00 3.57 0.00 0.00 0.00 0.00 0.00 2.63 6.30 19.97 6.53 0.00 3.33 0.00 0.00 0.00 0.00 0.00 3.12 0.00 22 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 0.00 4.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.18 23 ER2b ExonRegion 1 3.59 2.79 4.38 4.37 7.17 2.02 7.47 3.05 3.73 1.89 11.20 96.64 56.36 17.87 34.72 16.22 9.29 1.53 2.59 3.68 3.81 22.74 6.12 24 E2_Db NovelBoundary 1 3.56 0.00 0.00 1.47 0.00 0.00 0.00 0.00 4.14 0.00 31.64 91.08 11.69 42.79 11.74 0.00 27.86 0.00 0.00 0.00 5.19 5.33 0.00 25 I2 Intron 0 21.66 0.00 0.00 2.92 18.74 2.31 4.04 3.71 1.98 0.92 27.07 145.48 51.82 160.07 106.13 59.24 28.45 0.00 0.00 0.00 1.18 38.54 21.62 26 I2_SR1 SilentIntronRegion 0 21.66 0.00 0.00 2.92 18.74 2.31 4.04 3.71 1.98 0.92 27.07 145.45 51.82 160.07 106.12 59.23 28.44 0.00 0.00 0.00 1.18 38.54 21.61 27 E3_Aa NovelBoundary 1 6.74 0.00 0.00 1.63 0.00 0.00 0.00 4.07 2.49 1.13 14.90 149.00 20.45 13.01 43.64 39.82 69.94 0.00 0.00 0.00 3.15 11.27 35.60 28 ER3a ExonRegion 0 8.24 0.79 1.82 2.61 4.94 1.02 0.96 2.87 4.41 1.62 16.76 85.37 37.57 35.57 30.20 53.91 32.29 0.00 0.00 0.47 5.15 38.64 42.46 29 E3_Da NovelBoundary 0 6.37 3.22 0.00 1.63 8.40 0.00 0.00 1.85 0.00 3.28 18.27 72.77 32.95 20.25 6.18 54.17 31.14 0.00 0.00 0.00 5.44 39.68 28.08 30 I3 Intron 0 15.75 0.49 0.98 2.07 3.12 0.98 1.54 0.88 4.74 0.42 15.79 87.54 50.87 21.33 25.05 41.04 25.20 0.00 0.00 0.10 3.00 43.25 25.27 31 I3_SR1 SilentIntronRegion 0 14.87 0.29 0.32 1.33 3.50 1.60 0.53 0.90 5.07 0.60 16.93 79.03 53.45 23.81 23.00 68.53 26.73 0.00 0.00 0.00 5.43 45.97 33.17 32 I3_AR1 ActiveIntronRegion 0 17.52 0.41 1.75 2.92 3.48 0.34 1.72 1.41 6.29 0.47 18.75 114.34 62.97 25.96 28.51 37.35 30.13 0.00 0.00 0.29 1.42 57.90 24.64 33 I3_SR2 SilentIntronRegion 0 14.76 0.74 0.73 1.82 2.50 1.13 2.16 0.34 3.01 0.23 12.10 68.34 37.36 15.02 23.36 23.85 19.33 0.00 0.00 0.00 2.70 27.11 19.97 34 E4_Aa NovelBoundary 0 21.71 0.00 1.48 2.06 4.33 0.00 6.76 2.22 7.73 0.00 15.64 48.77 39.28 40.97 19.66 82.80 41.05 0.00 0.00 0.00 4.82 40.23 15.19 35 ER4a ExonRegion 0 12.14 0.35 3.50 4.22 3.04 0.00 1.38 2.69 3.52 0.00 14.80 69.64 23.11 28.11 39.15 41.92 24.71 0.00 0.00 0.37 3.45 34.77 31.34 36 IG41 Intergenic 0 8.78 0.55 0.77 1.47 2.57 0.72 0.44 0.70 2.21 0.05 7.32 26.42 11.19 8.76 16.28 16.80 10.12 0.00 0.00 0.13 1.39 16.04 16.16 37 IG41_SR1 SilentIntergenicRegion 0 17.55 0.00 0.00 0.00 7.34 0.00 1.11 1.06 0.00 0.00 9.85 24.16 5.90 16.50 18.25 26.37 10.65 0.00 0.00 0.75 0.00 19.96 15.25 38 IG41_AR1 ActiveIntergenicRegion 0 13.80 1.23 1.66 3.39 4.59 1.11 0.90 1.86 1.96 0.26 26.38 63.64 10.19 33.22 44.48 46.75 28.58 0.00 0.00 0.25 2.34 38.64 28.90 39 IG41_SR2 SilentIntergenicRegion 0 7.32 0.39 0.56 1.01 1.95 0.63 0.31 0.40 2.33 0.00 2.45 17.09 11.59 2.40 9.12 9.02 5.46 0.00 0.00 0.08 1.19 10.25 12.98