Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC073343.4 Gene 0 8.60 22.67 23.17 21.25 35.16 22.21 38.32 11.96 10.53 8.97 0.31 0.83 2.15 0.50 1.12 0.59 0.66 5.92 8.37 10.42 1.31 4.48 4.09 2 401847 Transcript 0 2.91 6.86 7.10 5.26 9.41 6.89 13.32 5.14 3.55 2.99 0.09 0.22 0.40 0.10 0.25 0.18 0.14 2.38 2.43 2.56 0.56 1.06 1.05 3 328239 Transcript 0 1.96 2.71 3.23 2.79 4.44 1.94 6.13 3.56 2.34 2.62 0.00 0.39 1.08 0.00 0.51 0.11 0.72 0.83 1.06 2.90 0.40 0.52 0.66 4 ER1a ExonRegion 0 0.00 0.00 0.41 0.25 0.24 0.00 0.40 0.05 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 E1_Da NovelBoundary 0 11.26 36.24 51.42 48.65 81.58 35.21 76.14 16.72 13.34 35.73 0.00 0.00 6.01 0.00 0.00 0.00 0.00 25.54 23.53 4.86 6.30 12.31 7.94 6 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 Ix Intron 0 1.38 27.92 0.00 0.00 17.50 7.19 13.85 1.68 0.00 0.00 0.00 0.00 5.59 0.87 1.34 0.00 0.00 1.21 6.25 2.78 1.44 1.36 13.44 8 Ix_SR1 SilentIntronRegion 0 1.42 28.63 0.00 0.00 17.96 7.38 14.13 1.71 0.00 0.00 0.00 0.00 5.74 0.90 1.37 0.00 0.00 1.24 6.41 2.86 1.48 1.40 13.76 9 E2_Aa NovelBoundary 0 16.23 69.66 60.55 45.35 60.53 31.00 60.50 31.54 33.48 29.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.55 13.74 17.32 0.00 11.02 21.26 10 ER2a ExonRegion 0 6.94 26.67 35.02 30.16 34.06 12.02 32.22 12.11 8.69 12.97 0.70 0.00 4.22 0.00 0.87 1.02 0.00 10.04 9.28 11.63 1.61 3.79 5.35 11 E2_Da NovelBoundary 0 8.82 36.51 83.14 77.98 33.19 20.90 48.45 27.03 45.51 33.44 0.00 0.00 0.00 2.30 0.00 4.36 0.00 22.63 3.76 11.57 0.00 4.90 3.59 12 Ix Intron 0 8.15 28.37 11.42 10.75 41.20 23.82 43.32 11.15 7.08 10.69 0.93 1.72 4.11 0.64 0.00 1.43 0.00 2.65 12.26 11.26 0.00 6.01 2.83 13 Ix_SR1 SilentIntronRegion 0 8.28 28.88 11.64 10.94 41.96 24.24 44.12 11.35 7.20 10.88 0.95 1.71 4.19 0.66 0.00 1.46 0.00 2.70 12.50 11.48 0.00 6.11 2.85 14 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER3a ExonRegion 0 0.00 0.00 1.50 1.59 0.00 0.20 0.15 0.58 0.00 2.10 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 Ix Intron 0 9.81 22.29 14.62 14.55 36.09 17.78 30.69 8.69 8.53 7.92 0.00 0.00 1.63 1.69 1.73 2.51 0.00 2.72 5.37 8.97 0.93 4.39 0.00 17 Ix_SR1 SilentIntronRegion 0 9.98 22.63 14.87 14.77 36.61 18.08 31.20 8.83 8.67 8.06 0.00 0.00 1.66 1.72 1.76 2.55 0.00 2.76 5.46 9.12 0.94 4.46 0.00 18 E4_Aa NovelBoundary 0 7.41 81.10 58.63 44.42 11.29 15.84 57.59 28.71 22.92 18.00 4.79 0.00 0.00 0.00 0.00 0.00 4.58 12.52 18.35 17.39 5.31 8.45 3.93 19 ER4a ExonRegion 0 7.56 12.72 31.18 22.49 22.74 23.96 25.89 11.77 12.01 14.37 0.00 1.17 2.35 0.00 1.45 0.00 0.00 4.22 7.29 13.22 4.24 2.04 1.92 20 E4_Da NovelBoundary 0 10.00 19.47 25.63 15.95 39.98 7.95 31.09 11.95 10.13 15.23 0.00 0.00 6.01 0.00 0.00 0.00 0.00 7.17 9.51 21.99 2.29 0.00 0.00 21 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E5_Aa NovelBoundary 0 115.50 106.76 56.98 30.73 41.09 42.42 60.81 37.09 18.87 19.77 0.00 0.00 6.49 0.00 0.00 0.00 0.00 1.82 3.95 13.04 0.00 8.70 20.23 23 ER5a ExonRegion 0 3.23 19.07 12.31 5.04 23.98 15.69 47.35 8.89 3.68 4.28 0.00 0.00 0.27 0.66 1.01 0.00 0.00 1.36 3.15 2.11 0.13 1.01 0.00 24 E5_Da NovelBoundary 0 2.96 30.26 23.95 24.31 76.83 34.24 35.95 15.16 8.91 18.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.40 7.91 3.26 0.00 2.88 11.35 25 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E6_Aa NovelBoundary 0 0.00 5.79 34.21 22.41 28.78 0.00 20.18 9.98 11.63 10.50 0.00 0.00 12.99 0.00 0.00 0.00 0.00 5.97 0.00 0.00 0.00 9.37 3.59 27 ER6a ExonRegion 0 1.85 3.40 0.00 0.00 2.19 1.67 1.23 0.00 0.00 0.00 0.00 0.00 7.16 0.00 1.90 0.00 0.00 0.00 2.66 5.61 0.00 1.70 2.40 28 E6_Da NovelBoundary 0 7.11 13.88 53.66 67.52 48.98 28.11 23.80 26.29 27.92 24.04 0.00 0.00 27.27 2.47 5.56 0.00 0.00 4.85 17.88 37.01 3.15 13.96 24.41 29 E6a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E7_Aa NovelBoundary 0 3.78 9.34 41.66 25.87 14.52 36.97 50.61 6.12 12.24 14.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.88 0.00 2.94 0.00 6.18 18.87 31 ER7a ExonRegion 0 0.00 9.26 0.18 0.00 2.28 15.11 9.73 0.13 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.49 3.13 2.13 2.08 1.89 0.00 32 E7_Da NovelBoundary 0 9.26 50.98 37.58 53.87 7.47 28.79 45.71 13.60 29.86 18.29 0.00 0.00 6.82 0.00 4.45 0.00 8.79 8.50 4.42 8.18 0.00 5.63 4.18 33 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 Ix Intron 0 17.99 18.73 0.00 0.00 20.85 14.29 23.45 0.00 0.00 0.00 0.00 0.00 13.68 2.84 1.45 2.11 0.00 0.00 2.26 6.03 1.56 1.48 0.00 35 Ix_SR1 SilentIntronRegion 0 18.47 19.17 0.00 0.00 21.33 14.57 24.02 0.00 0.00 0.00 0.00 0.00 14.07 2.90 1.49 2.17 0.00 0.00 2.32 6.17 1.61 1.52 0.00 36 E8_Aa NovelBoundary 0 42.30 32.82 33.00 31.23 52.29 29.13 49.64 7.60 10.91 8.89 0.00 0.00 0.00 2.41 0.00 0.00 0.00 1.74 8.56 17.64 0.00 0.00 0.00 37 E8_Ab NovelBoundary 0 7.26 28.48 19.81 12.99 47.03 5.39 12.85 4.76 1.79 6.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.81 19.11 9.40 0.00 3.12 4.10 38 ER8a ExonRegion 0 4.13 10.88 8.70 2.45 7.63 1.93 2.71 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 8.44 4.36 0.00 0.42 2.79 39 ER8b ExonRegion 0 4.32 13.91 13.48 4.09 9.63 9.98 9.43 1.73 0.00 0.00 0.00 0.00 0.00 1.17 0.00 0.00 0.00 1.85 15.10 2.81 0.00 1.75 6.81 40 E8_Da NovelBoundary 0 7.19 6.51 9.08 5.23 17.32 19.36 15.28 2.09 4.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 4.52 3.26 0.00 2.76 4.35 41 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 E8b_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER8c ExonRegion 0 1.67 2.89 9.35 3.37 3.24 6.56 4.81 1.82 0.00 0.12 0.00 0.00 0.00 0.51 0.00 0.00 0.00 1.94 3.19 0.00 0.00 1.54 3.40 44 E9a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 ER9a ExonRegion 0 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 E10_Aa NovelBoundary 0 9.04 67.82 31.28 19.94 31.83 29.53 39.17 19.35 17.42 15.31 0.00 7.05 0.00 0.00 0.00 0.00 0.00 12.60 13.46 10.35 0.00 3.06 0.00 47 ER10a ExonRegion 0 12.02 20.58 4.79 4.53 32.97 35.78 67.89 7.14 4.03 3.80 1.10 0.00 0.00 0.00 0.00 1.59 1.87 8.15 5.42 5.89 0.00 4.72 3.39 48 E10_Da NovelBoundary 0 5.78 47.03 40.77 30.50 60.36 34.87 42.57 18.32 21.15 16.52 0.00 0.00 6.49 3.00 0.00 0.00 0.00 12.23 9.60 14.32 5.37 5.51 4.18 49 E10a_E11b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 E11_Aa NovelBoundary 0 18.67 39.53 68.48 39.29 50.51 24.93 26.90 34.75 8.30 30.43 2.58 0.00 0.00 0.00 0.00 8.63 0.00 11.07 62.78 5.75 2.53 15.49 4.18 51 E11_Ab NovelBoundary 0 11.26 15.66 19.87 18.45 36.76 8.69 47.30 15.28 8.91 13.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.52 9.65 0.00 14.70 0.00 52 ER11a ExonRegion 0 0.94 0.68 5.04 5.07 4.61 1.73 7.80 5.28 2.88 4.91 0.00 0.00 0.00 0.00 0.81 0.17 0.00 0.10 4.78 2.36 0.00 1.97 0.00 53 E11_Da NovelBoundary 0 10.67 6.45 7.33 6.03 8.23 5.17 17.14 7.48 1.79 3.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.05 6.14 0.00 0.00 0.00 54 E11a_E11c KnownJunction 0 6.74 9.41 16.56 7.92 4.07 2.61 10.82 17.91 7.99 11.95 0.00 0.00 0.00 0.00 0.00 0.00 4.58 4.68 0.00 9.01 0.00 0.00 0.00 55 ER11b ExonRegion 0 7.20 11.66 14.99 16.17 14.63 9.90 30.23 18.72 18.44 12.27 0.00 4.04 3.13 0.00 2.90 0.20 2.97 6.34 6.37 11.42 1.84 3.54 2.45 56 E11b_E11d KnownJunction 0 7.11 6.12 13.60 11.45 16.38 13.57 29.94 25.22 22.11 10.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.95 0.00 3.00 0.00 0.00 0.00 57 E11_Ad NovelBoundary 0 10.59 15.00 13.81 7.59 31.24 10.62 31.84 14.01 4.66 9.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.97 0.00 5.75 2.35 0.00 0.00 58 ER11c ExonRegion 0 5.64 12.20 18.38 17.26 9.81 9.17 22.07 26.50 14.82 9.94 0.00 1.44 1.56 0.00 1.93 0.00 1.10 6.16 2.12 4.96 1.47 1.39 0.98 59 ER11d ExonRegion 0 13.40 21.69 24.51 27.26 31.22 20.17 53.84 31.69 22.23 17.20 0.00 4.33 4.69 0.00 2.90 0.00 3.30 7.39 6.37 14.89 4.41 4.17 2.94 60 ER11e ExonRegion 0 11.99 16.27 13.89 17.26 37.46 15.28 47.22 15.56 14.82 11.85 0.00 4.33 4.69 0.00 2.90 0.99 3.30 4.31 4.25 14.89 4.41 2.08 4.89 61 ER11f ExonRegion 0 11.47 36.32 27.13 25.07 89.98 25.72 78.73 30.67 23.04 14.99 0.00 3.12 1.42 1.17 1.96 2.97 1.46 9.02 15.33 12.96 3.95 8.19 7.03 62 E11_Dc KnownBoundary 0 14.89 63.28 27.05 26.07 121.22 45.03 88.41 16.22 15.19 6.02 0.00 6.30 0.00 3.00 0.00 3.25 0.00 2.57 29.37 11.76 2.90 13.23 6.49 63 E11c_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 ER11g ExonRegion 0 1.57 20.34 12.39 8.64 35.32 10.01 24.55 10.82 5.36 3.90 0.00 1.98 0.00 0.93 0.00 0.59 0.00 2.16 9.10 4.32 2.20 3.33 1.26 65 E11_Dd NovelBoundary 0 6.96 52.89 37.76 24.57 31.66 14.99 57.76 27.85 3.12 13.94 0.00 0.00 13.31 0.00 0.00 0.00 4.02 2.57 4.14 15.47 3.03 3.12 4.35 66 E11d_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 E12_Aa NovelBoundary 0 52.82 106.43 54.97 52.67 189.47 133.96 233.18 39.92 40.68 28.98 2.32 0.00 0.00 0.00 4.45 3.25 4.49 12.85 35.39 36.18 6.05 24.37 8.11 68 ER12a ExonRegion 0 0.00 0.06 0.00 0.12 0.47 0.00 0.39 0.05 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 E12_Da NovelBoundary 0 13.11 11.51 0.00 0.00 14.86 19.82 34.58 0.00 0.00 0.00 0.00 0.00 6.01 0.00 0.00 0.00 0.00 0.00 12.33 14.06 0.00 2.88 7.68 70 E12a_E13a NovelJunction 0 3.63 19.34 35.54 27.54 8.32 10.85 38.91 24.97 27.57 14.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.28 4.61 12.46 0.00 3.00 4.18 71 E12a_E13b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72 E13_Ab NovelBoundary 0 0.00 3.09 6.48 5.49 23.68 9.60 26.19 1.93 4.92 6.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.36 0.00 2.43 0.00 0.00 4.18 73 ER13a ExonRegion 0 11.29 3.39 1.23 3.18 8.92 0.61 11.92 2.30 3.71 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 2.13 0.00 2.08 2.94 74 ER13b ExonRegion 0 16.72 41.17 40.55 43.94 66.84 40.22 61.86 20.51 21.06 14.34 0.54 1.42 3.24 1.15 1.84 0.83 1.38 9.86 13.35 19.31 0.92 9.30 7.76