Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C7orf46 Gene 0 19.37 35.77 28.80 32.54 53.58 33.58 37.92 37.11 23.92 37.09 13.30 19.88 21.23 6.71 7.79 10.75 13.43 14.86 18.08 36.85 5.46 6.16 9.16 2 409192 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 344962 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 429719 Transcript 0 3.77 5.36 2.29 3.17 6.50 2.53 6.41 2.97 2.51 4.19 1.79 3.95 5.78 2.84 4.63 4.56 5.66 2.91 4.03 8.97 2.50 1.74 4.33 5 462546 Transcript 0 14.60 11.26 11.95 15.39 63.03 21.81 38.05 25.58 20.40 13.79 8.79 15.46 15.47 3.35 5.29 6.41 8.08 14.66 9.93 23.47 3.57 5.59 5.42 6 446234 Transcript 0 473.57 24.83 17.55 29.85 89.18 20.50 114.36 23.99 16.33 9.01 3.95 2.70 15.18 6.98 11.37 17.52 21.04 33.25 15.91 17.96 77.38 131.47 40.97 7 409653 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 409994 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 483090 Transcript 0 0.87 0.65 0.17 5.39 1.84 5.81 2.61 5.23 3.32 0.94 0.09 0.33 3.72 0.18 0.00 0.00 0.30 0.17 1.90 2.24 0.00 0.00 0.27 10 IG10_AR1 ActiveIntergenicRegion 0 3.28 22.86 24.39 6.63 8.99 6.66 6.19 7.54 5.76 5.73 1.72 1.82 5.63 0.13 0.00 0.42 2.29 1.36 9.97 12.50 0.44 0.83 0.00 11 ER1a ExonRegion 0 4.90 10.76 6.16 2.55 7.82 19.45 8.33 4.96 2.34 4.98 4.78 1.03 0.25 0.00 0.00 5.71 18.33 2.72 15.68 5.60 1.10 2.19 2.01 12 E1_Ab KnownBoundary 0 0.00 12.63 5.03 1.56 3.57 16.58 14.04 4.72 0.00 2.98 0.00 0.00 0.00 0.00 0.00 4.27 17.95 7.25 21.37 6.52 0.00 3.12 4.35 13 E1_Ac KnownBoundary 0 0.00 10.06 3.49 0.00 12.99 11.58 2.25 5.05 0.00 0.00 2.68 0.00 0.00 0.00 0.00 4.36 9.54 0.00 4.80 3.26 3.15 0.00 0.00 14 E1_Ad KnownBoundary 0 27.78 41.31 18.18 14.65 32.60 93.75 49.73 17.17 9.58 28.80 18.06 0.00 6.82 0.00 0.00 0.00 21.51 15.09 16.19 26.21 5.25 0.00 0.00 15 ER1b ExonRegion 0 25.57 37.62 17.97 10.34 26.98 81.45 31.22 14.55 6.18 21.03 20.13 4.33 7.43 0.00 0.00 11.89 45.39 8.93 37.16 20.92 4.96 4.17 2.94 16 ER1c ExonRegion 0 28.78 55.31 26.47 13.63 41.21 130.57 59.58 22.47 12.85 29.13 32.09 4.33 9.38 0.00 0.00 14.86 47.53 10.72 41.41 46.81 6.61 4.17 2.94 17 ER1d ExonRegion 0 21.59 69.33 48.84 24.48 46.84 122.18 66.59 35.81 23.68 52.49 19.35 1.40 5.50 2.49 0.00 7.90 17.17 5.34 51.06 47.63 5.28 2.74 3.26 18 E1_Da NovelBoundary 0 11.34 9.41 19.81 7.42 3.99 0.00 4.42 8.58 3.36 2.79 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.61 9.40 0.00 3.12 0.00 19 E1a_E2a KnownJunction 0 7.56 26.31 26.76 23.04 37.35 19.93 10.82 21.65 20.60 31.78 7.21 0.00 6.82 2.12 0.00 0.00 4.77 1.87 78.21 18.79 2.41 0.00 0.00 20 E1a_E4a KnownJunction 0 14.89 3.35 13.07 7.56 12.39 31.29 4.37 12.36 8.71 23.75 2.37 7.05 0.00 0.00 0.00 0.00 0.00 1.95 8.28 6.39 0.00 0.00 0.00 21 Ix Intron 0 10.92 31.94 44.74 12.14 21.33 20.85 17.38 12.99 8.20 14.43 5.44 7.23 11.16 0.00 0.00 3.48 9.29 3.77 17.18 28.93 0.00 0.98 1.38 22 Ix_AR1 ActiveIntronRegion 0 10.97 32.09 44.95 12.20 21.43 20.95 17.47 13.05 8.24 14.49 5.46 7.26 11.21 0.00 0.00 3.50 9.33 3.79 17.26 29.06 0.00 0.98 1.38 23 ER2a ExonRegion 0 6.96 32.40 59.17 50.04 45.92 41.10 19.87 52.11 39.18 75.54 31.30 9.95 9.22 3.95 0.13 13.31 15.92 33.11 68.89 57.41 2.25 3.05 5.96 24 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 3.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E2a_E4a KnownJunction 0 7.56 46.37 70.16 73.38 147.45 125.84 69.51 55.08 29.92 77.09 29.01 6.30 6.82 0.00 0.00 3.85 17.39 44.44 78.59 66.35 2.97 0.00 3.16 27 E3_Aa NovelBoundary 0 61.05 80.05 66.64 105.65 83.36 55.25 132.36 80.67 57.67 77.23 26.48 0.00 6.82 12.30 15.95 30.50 60.68 73.46 48.66 56.06 13.84 11.21 30.65 28 ER3a ExonRegion 0 11.45 13.14 5.30 7.66 11.66 7.50 14.15 5.05 5.39 7.43 4.17 13.44 16.92 8.87 15.31 12.76 10.94 8.44 9.46 18.00 6.31 3.95 11.79 29 E3_Ab KnownBoundary 0 22.67 28.42 14.58 14.45 37.01 19.14 38.77 27.81 15.42 28.72 19.53 5.85 14.12 2.47 15.45 22.47 23.00 34.90 17.98 40.59 8.34 8.51 24.93 30 ER3b ExonRegion 0 20.70 14.81 11.88 7.32 20.11 14.61 24.31 15.61 14.11 13.98 11.74 21.42 19.40 14.70 20.52 25.81 31.86 17.56 20.25 39.01 9.23 11.82 28.07 31 E3_Da KnownBoundary 0 3880.17 3244.95 4588.22 5141.60 3119.70 2623.21 3830.98 4954.93 4371.77 4241.91 1017.57 535.82 724.95 355.06 948.15 2651.95 2497.80 5724.21 1767.96 3593.30 1982.37 1410.76 3502.96 32 E3a_E4a KnownJunction 0 947.13 49.66 35.10 59.70 178.35 41.00 225.36 47.97 32.67 18.02 7.90 5.40 30.36 13.95 22.75 35.03 42.08 66.49 31.81 35.92 154.75 262.94 81.95 33 ER3c ExonRegion 0 7.41 10.85 6.14 2.06 9.40 5.13 15.74 9.81 4.41 7.24 4.75 6.32 11.98 5.31 7.84 10.04 17.35 6.12 10.68 23.58 6.16 4.73 9.84 34 E3b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 4.16 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 E4_Aa NovelBoundary 0 2.89 0.00 0.00 17.21 0.00 0.00 13.38 0.00 5.24 4.30 2.68 0.00 6.33 0.00 0.00 0.00 3.83 0.00 0.00 3.26 0.00 0.00 0.00 36 ER4a ExonRegion 0 18.87 107.45 79.91 82.12 82.21 110.85 65.17 83.13 45.34 108.67 52.15 22.85 9.85 7.31 0.09 9.63 33.30 54.48 68.78 117.03 7.60 7.55 6.01 37 E4a_E5a KnownJunction 1 63.64 151.82 107.00 72.45 108.32 126.92 43.99 99.07 54.25 97.48 58.07 0.00 6.17 4.83 0.00 3.93 22.53 65.70 39.53 143.37 2.72 5.57 12.80 38 ER5a ExonRegion 1 55.24 129.54 97.29 76.32 92.05 125.43 47.27 91.26 55.46 94.39 50.64 10.39 3.28 5.68 0.00 11.89 23.11 63.01 46.82 123.62 2.20 4.79 10.57 39 ER5b ExonRegion 0 47.63 149.84 118.13 121.81 105.32 149.69 87.73 91.34 54.38 133.18 48.49 23.60 15.83 8.94 0.00 7.42 23.83 64.92 61.09 113.77 4.89 5.15 6.86 40 E5_Db NovelBoundary 0 11.11 16.97 14.52 23.47 36.67 0.00 48.58 21.24 13.40 10.80 5.05 0.00 0.00 4.41 4.45 8.72 4.77 7.96 38.21 17.96 0.00 0.00 0.00 41 E5b_E6a KnownJunction 0 3.11 11.45 2.28 8.52 31.92 14.54 1.85 11.83 15.68 6.85 2.53 0.00 0.00 7.12 0.00 0.00 0.00 6.55 0.00 29.40 0.00 0.00 0.00 42 E5b_E7a KnownJunction 0 9.78 11.31 40.57 89.77 11.80 22.20 26.63 25.96 1.22 42.44 10.11 18.76 0.00 2.47 0.00 0.00 22.44 35.40 43.48 23.91 0.00 0.00 7.51 43 E5b_E8a KnownJunction 0 29.93 95.64 91.72 37.49 45.25 37.14 37.76 52.90 22.22 83.49 9.74 5.70 6.66 2.30 0.00 0.00 4.49 10.65 25.60 34.58 0.00 5.57 0.00 44 E6_Aa NovelBoundary 0 7.19 8.55 5.20 9.26 28.86 8.29 35.46 32.74 13.77 16.09 8.05 31.21 13.15 0.00 0.00 0.00 0.00 2.45 4.52 24.10 0.00 3.12 0.00 45 ER6a ExonRegion 0 8.47 16.78 7.44 8.00 35.31 18.70 18.16 25.81 22.81 14.33 13.94 13.35 7.46 1.76 0.00 1.97 3.63 10.28 5.47 35.03 1.96 6.05 5.75 46 E6_Da KnownBoundary 0 3.78 3.42 5.32 5.19 20.20 5.62 24.78 24.23 21.18 16.60 15.32 18.16 11.53 2.18 0.00 3.33 4.77 7.46 8.66 29.21 2.84 12.49 3.50 47 E6a_E8a KnownJunction 0 0.00 2.83 0.00 6.13 7.30 0.00 0.00 0.00 2.78 6.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 48 ER6b ExonRegion 0 18.16 22.52 15.32 24.74 65.95 26.75 46.92 37.11 29.88 26.35 15.16 24.61 30.94 6.71 6.13 12.83 16.16 17.84 15.16 40.87 7.13 8.74 10.84 49 E6_Db NovelBoundary 0 9.71 6.18 5.26 27.04 51.87 24.02 12.81 18.89 25.12 22.99 9.69 24.61 13.15 2.47 0.00 10.60 9.54 14.18 17.32 35.28 0.00 5.08 3.76 50 E6b_E7a KnownJunction 0 11.04 0.00 8.57 6.03 60.10 16.87 29.19 14.05 10.91 1.24 2.42 6.30 0.00 0.00 4.45 0.00 0.00 11.48 4.71 6.07 0.00 2.45 0.00 51 I6 Intron 0 16.94 30.56 10.23 23.84 64.87 28.67 34.73 30.55 21.23 26.30 11.70 10.88 10.22 1.96 0.08 4.34 5.36 10.97 11.64 32.66 1.79 3.30 2.86 52 I6_AR1 ActiveIntronRegion 0 11.79 19.63 8.71 21.95 51.73 28.00 28.87 23.70 22.94 23.72 12.41 9.79 8.48 2.49 0.00 4.67 5.55 16.21 11.76 36.94 2.79 3.76 2.89 53 I6_AR2 ActiveIntronRegion 1 6.01 41.66 12.42 19.71 73.98 10.36 28.34 30.50 15.69 23.16 16.51 3.98 12.80 0.92 0.00 17.51 9.37 10.29 21.69 43.07 1.49 6.08 0.00 54 I6_AR3 ActiveIntronRegion 1 8.47 31.67 12.87 22.68 53.71 18.99 22.89 43.58 14.56 21.55 19.19 4.33 19.43 1.62 0.00 1.49 8.72 7.65 14.33 63.83 3.46 3.27 0.00 55 I6_SR2 SilentIntronRegion 0 25.33 44.78 12.58 28.25 84.92 33.38 45.14 40.50 21.52 31.76 11.19 13.72 12.57 1.58 0.20 3.40 5.14 5.92 11.58 28.51 0.75 2.82 3.36 56 E7_Aa NovelBoundary 0 87.42 30.78 19.31 36.49 189.05 61.50 83.20 79.36 18.61 39.65 9.84 31.66 0.00 0.00 0.00 12.30 4.30 8.62 9.13 40.46 0.00 2.57 0.00 57 ER7a ExonRegion 0 38.37 46.17 51.00 92.87 138.12 85.02 71.71 68.34 40.22 54.51 28.33 29.02 9.77 5.61 1.29 10.46 15.53 29.70 37.72 47.10 1.08 6.73 10.22 58 E7_Da NovelBoundary 0 7.41 25.39 17.15 21.14 28.18 21.81 11.17 46.37 27.81 24.20 0.00 17.71 19.64 0.00 0.00 4.02 4.58 1.58 8.00 15.72 0.00 0.00 0.00 59 E7a_E8a KnownJunction 0 59.79 35.39 52.01 77.95 138.88 74.90 66.64 59.76 27.23 42.09 29.74 31.51 12.17 12.48 4.45 4.27 26.46 7.42 44.33 58.23 0.00 9.00 7.68 60 I7 Intron 0 4.13 20.88 7.13 12.93 26.34 17.58 27.98 26.44 15.62 20.74 3.12 9.64 7.00 0.32 0.00 1.77 1.40 2.26 2.43 12.82 0.37 1.42 1.00 61 I7_SR1 SilentIntronRegion 0 4.38 22.13 7.56 13.71 27.92 18.64 29.66 28.03 16.56 21.99 3.30 10.22 7.42 0.34 0.00 1.87 1.48 2.40 2.58 13.58 0.40 1.50 1.06 62 E8_Aa NovelBoundary 0 22.74 17.17 2.81 21.44 59.00 17.66 27.73 10.19 1.27 11.79 10.27 6.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.46 0.00 2.69 0.00 63 E8_Ab NovelBoundary 0 58.83 84.26 73.65 83.97 93.38 47.76 60.86 81.33 46.21 101.51 18.79 11.25 32.14 4.41 0.00 3.33 10.94 3.23 22.02 52.22 0.00 4.59 0.00 64 ER8a ExonRegion 0 76.99 118.96 143.22 138.16 182.62 106.36 97.64 128.77 67.78 152.97 51.46 35.72 33.42 11.37 2.18 5.94 26.82 23.56 51.76 94.41 0.00 11.98 3.67 65 ER8b ExonRegion 0 105.09 155.34 151.29 146.92 220.84 141.13 125.85 156.04 95.15 174.50 54.92 42.14 42.84 5.78 0.00 7.57 19.28 23.36 50.63 111.57 0.26 10.83 2.15 66 E8_Da NovelBoundary 0 0.00 0.00 6.18 10.99 7.13 2.61 2.25 22.18 3.59 14.59 0.00 0.00 12.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 E8a_E9a KnownJunction 0 115.58 238.44 134.32 152.63 252.80 89.78 125.11 172.43 99.59 170.44 46.43 33.46 6.82 2.47 0.00 7.69 28.61 25.41 43.77 110.13 2.47 2.88 0.00 68 E9_Aa NovelBoundary 0 8.89 14.54 19.13 2.06 0.00 0.00 11.44 7.27 1.53 9.56 0.00 15.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 69 ER9a ExonRegion 0 78.05 215.14 128.56 133.11 250.22 127.93 118.13 182.71 96.82 188.59 49.07 35.54 9.45 7.60 0.00 16.43 27.28 21.17 48.31 97.16 2.57 12.24 2.08 70 E9_Da KnownBoundary 0 62.60 136.09 90.48 83.47 111.80 92.62 73.62 84.74 44.85 107.66 19.32 26.11 5.68 0.00 0.00 7.52 12.25 8.87 49.04 57.72 2.47 8.70 0.00 71 E9_Db KnownBoundary 0 58.53 94.52 42.90 43.62 164.43 130.78 133.90 71.88 52.40 78.68 35.01 25.36 12.99 4.53 0.00 0.00 7.95 2.07 8.56 42.31 0.00 3.06 0.00 72 ER9b ExonRegion 0 86.17 203.94 129.89 126.36 235.47 182.33 157.36 181.98 104.81 203.00 50.53 50.72 21.44 9.28 0.00 6.79 22.63 12.93 54.61 89.36 2.20 13.10 0.00 73 ER9c ExonRegion 0 91.91 216.29 155.44 144.78 312.38 222.98 201.69 210.83 112.40 216.72 51.28 81.06 34.43 7.39 0.00 3.10 15.31 9.87 49.68 92.03 0.28 17.02 0.00 74 E9_Dc KnownBoundary 1 132.84 270.68 196.65 164.28 364.09 264.96 278.36 214.74 98.73 223.36 32.32 119.89 46.43 2.35 0.00 4.36 13.37 10.82 60.99 130.65 0.00 22.29 0.00 75 E9c_E10a KnownJunction 0 0.00 0.00 0.00 3.46 0.00 8.69 0.00 6.70 3.59 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76 ER9d ExonRegion 1 52.84 141.15 159.80 143.43 164.16 95.49 85.66 158.23 61.40 169.36 9.26 48.63 36.06 3.29 0.74 0.87 2.82 3.17 16.53 53.40 1.04 9.20 0.00 77 E9_Dd NovelBoundary 0 16.67 61.96 20.05 24.21 19.35 33.73 22.70 15.44 7.87 11.31 0.00 5.55 12.17 0.00 0.00 3.25 0.00 3.11 0.00 10.55 0.00 0.00 0.00 78 ER9e ExonRegion 0 8.16 42.41 24.68 22.97 22.93 24.10 12.67 8.89 4.06 7.54 0.00 9.28 10.05 0.00 0.00 0.00 0.00 1.58 0.00 2.74 0.00 0.00 0.00 79 ER10a ExonRegion 0 1.75 1.31 0.33 7.33 3.69 2.93 5.23 3.77 3.05 1.88 0.18 0.66 0.62 0.35 0.00 0.00 0.61 0.34 3.80 4.49 0.00 0.00 0.54