Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TMEM196 Gene 0 1.93 38.69 18.12 66.28 45.83 209.82 71.45 26.90 29.25 27.76 0.00 0.00 0.00 0.00 0.05 0.19 0.00 7.00 3.93 18.01 0.00 0.00 0.00 2 396601 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 433641 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 422233 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 309985 Transcript 0 0.00 0.00 0.00 1.36 2.68 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 405764 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 405844 Transcript 0 0.00 3.05 1.23 1.36 0.00 6.11 0.66 3.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 493519 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1a ExonRegion 0 1.85 0.32 0.00 0.64 0.84 30.66 8.69 0.00 0.96 1.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 1.99 0.00 0.00 0.00 10 E1_Da NovelBoundary 0 0.00 8.49 12.24 6.53 7.98 166.32 105.28 7.85 12.99 2.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.30 42.35 31.58 0.00 0.00 0.00 11 I1 Intron 0 1.87 4.20 10.23 5.99 9.47 103.80 28.49 6.07 4.34 9.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.15 10.33 11.92 0.00 0.00 0.00 12 I1_AR1 ActiveIntronRegion 0 1.89 4.25 10.33 6.06 9.58 104.98 28.82 6.15 4.38 9.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.34 10.43 12.06 0.00 0.00 0.00 13 E2_Aa NovelBoundary 0 0.00 6.45 24.90 3.73 0.00 24.82 12.85 8.17 3.94 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.79 4.33 17.07 0.00 0.00 0.00 14 E2_Ab NovelBoundary 0 0.00 0.00 19.99 8.32 0.00 41.51 5.92 15.03 16.93 16.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.64 4.80 14.38 0.00 0.00 0.00 15 ER2a ExonRegion 0 0.00 0.00 0.61 1.36 0.00 0.00 1.32 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.78 1.06 0.00 0.00 0.00 16 ER2b ExonRegion 0 0.66 3.37 23.67 13.53 9.51 127.01 47.14 8.23 8.00 14.63 0.00 0.00 0.00 0.00 0.00 0.77 0.00 21.30 9.41 29.71 0.00 0.00 0.00 17 E2_Ac KnownBoundary 0 3.04 9.27 30.16 22.14 11.38 196.93 54.81 12.40 13.63 14.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.09 18.92 10.42 0.00 0.00 0.00 18 ER2c ExonRegion 0 1.45 7.03 27.18 16.40 15.44 146.03 46.41 10.31 13.36 14.51 0.00 0.00 0.00 0.00 0.00 1.65 0.00 8.01 11.77 20.70 0.00 0.00 0.00 19 E2_Da KnownBoundary 0 3.78 3.16 19.13 12.62 27.33 163.37 66.24 3.82 12.44 22.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.32 4.61 26.46 0.00 0.00 0.00 20 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER2d ExonRegion 0 0.79 8.59 15.88 19.29 10.83 93.29 40.97 10.46 17.02 17.20 0.00 0.00 0.00 0.00 0.00 0.55 0.00 17.40 5.83 24.01 0.00 0.00 0.00 22 E2_Db NovelBoundary 0 0.00 5.20 25.52 21.68 3.14 21.75 23.32 9.78 6.77 12.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.07 8.19 13.10 0.00 0.00 0.00 23 E2b_E3a KnownJunction 0 3.78 9.80 3.28 10.52 8.32 91.99 26.01 6.98 7.67 16.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.05 0.00 16.81 0.00 0.00 0.00 24 I2 Intron 0 0.58 8.18 14.23 14.80 5.78 9.06 26.24 5.30 4.58 4.36 0.00 0.04 0.00 0.00 0.01 0.25 0.02 1.42 1.47 7.93 0.00 0.00 0.00 25 I2_AR1 ActiveIntronRegion 0 1.03 6.34 27.27 15.47 6.64 12.31 44.85 5.38 3.00 6.88 0.00 0.00 0.00 0.00 0.00 0.36 0.00 3.11 3.83 15.66 0.00 0.00 0.00 26 I2_SR2 SilentIntronRegion 0 0.82 9.05 30.74 18.45 5.80 8.49 32.08 5.55 3.13 5.89 0.00 0.20 0.00 0.00 0.00 0.08 0.00 1.14 1.86 13.91 0.00 0.00 0.00 27 I2_AR2 ActiveIntronRegion 0 0.00 8.13 5.72 12.49 4.01 19.56 34.86 0.86 3.50 4.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 6.03 0.00 0.00 0.00 28 I2_AR3 ActiveIntronRegion 0 0.54 7.39 13.24 12.54 3.24 7.13 24.79 2.32 3.31 3.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 1.45 15.47 0.00 0.00 0.00 29 I2_SR3 SilentIntronRegion 0 0.70 9.75 13.04 20.00 5.05 8.31 27.82 5.31 6.26 5.47 0.00 0.00 0.00 0.00 0.00 0.09 0.00 2.22 1.66 10.80 0.00 0.00 0.00 30 I2_AR4 ActiveIntronRegion 0 0.75 18.14 35.37 40.85 13.88 11.15 45.41 14.19 10.40 10.02 0.00 0.00 0.00 0.00 0.00 0.74 0.00 3.79 4.08 11.80 0.00 0.00 0.00 31 I2_SR4 SilentIntronRegion 0 0.41 28.50 16.35 39.53 21.35 14.28 47.42 6.52 10.03 7.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.58 2.48 12.42 0.00 0.00 0.00 32 I2_AR5 ActiveIntronRegion 0 1.51 33.26 37.29 51.38 28.27 17.70 48.29 11.78 11.78 9.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 3.24 12.10 0.00 0.00 0.00 33 I2_SR5 SilentIntronRegion 0 0.45 6.17 6.50 9.90 4.43 8.79 21.20 4.45 4.29 3.08 0.00 0.01 0.00 0.00 0.02 0.29 0.04 1.12 0.96 4.86 0.00 0.00 0.00 34 E3_Aa NovelBoundary 0 0.00 5.53 0.00 3.66 3.90 34.24 54.98 2.55 4.43 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER3a ExonRegion 0 1.82 11.27 2.39 9.04 35.86 191.62 66.66 9.16 11.35 13.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.89 1.23 15.68 0.00 0.00 0.00 36 E3a_E4a KnownJunction 0 0.00 32.17 4.14 13.62 43.12 224.53 80.33 13.80 13.40 16.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.17 4.71 20.33 0.00 0.00 0.00 37 I3_SR1 SilentIntronRegion 0 0.00 2.50 1.60 3.92 3.69 9.87 22.26 1.36 2.06 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.17 1.02 3.61 0.00 0.00 0.00 38 I3_AR2 ActiveIntronRegion 0 0.00 1.85 1.03 3.27 5.78 20.00 17.82 2.15 3.60 2.50 0.00 0.00 0.38 0.00 0.00 0.00 0.66 1.26 1.27 3.06 0.00 0.00 0.00 39 ER4a ExonRegion 0 2.96 28.33 18.99 28.73 28.97 186.65 74.41 25.13 22.12 21.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.88 7.94 23.65 0.00 0.00 0.00 40 E4_Da NovelBoundary 0 0.00 8.49 4.88 7.96 11.63 62.46 34.40 4.39 5.79 12.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.60 9.32 5.05 0.00 0.00 0.00 41 E4a_E5a KnownJunction 0 0.00 3.35 20.08 13.32 4.07 117.66 21.60 6.74 4.48 7.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 E4a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 E4a_E6a KnownJunction 0 0.00 6.45 8.43 27.74 6.54 163.32 37.36 9.82 17.74 13.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.29 0.00 14.70 0.00 0.00 0.00 44 I4 Intron 0 0.19 17.71 2.89 17.86 13.89 53.45 37.74 9.97 9.71 9.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 2.94 7.49 0.00 0.00 0.00 45 I4_SR1 SilentIntronRegion 0 0.00 14.81 2.52 9.61 12.38 44.75 35.42 8.64 8.97 9.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 1.37 10.65 0.00 0.00 0.00 46 I4_AR1 ActiveIntronRegion 0 0.09 17.15 2.62 21.18 13.53 54.90 40.38 10.66 9.31 10.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 3.91 6.83 0.00 0.00 0.00 47 I4_SR2 SilentIntronRegion 0 0.89 25.52 4.58 22.83 18.21 66.15 33.66 10.28 12.67 8.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 2.73 3.60 0.00 0.00 0.00 48 E5_Ab NovelBoundary 0 0.00 20.33 5.26 5.66 7.64 26.80 11.44 0.00 4.63 5.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 4.61 0.00 0.00 0.00 0.00 49 ER5a ExonRegion 0 0.00 12.20 17.16 11.81 4.46 105.75 16.77 6.91 3.71 5.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 50 ER5b ExonRegion 0 0.00 10.60 13.12 16.51 7.73 92.96 25.79 4.04 3.57 5.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.73 0.00 3.27 0.00 0.00 0.00 51 E5_Da NovelBoundary 0 0.00 8.62 3.58 7.89 0.00 25.21 35.15 2.18 0.00 6.21 0.00 0.00 0.00 0.00 0.00 3.85 0.00 1.82 0.00 14.13 0.00 0.00 0.00 52 E5a_E6a KnownJunction 0 0.00 3.03 8.57 20.01 4.33 54.23 15.19 1.93 1.16 10.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.37 0.00 0.00 0.00 0.00 0.00 53 E5_Db NovelBoundary 0 0.00 6.25 3.22 23.77 7.89 48.21 43.68 2.46 7.15 11.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.60 0.00 3.20 0.00 0.00 0.00 54 ER5c ExonRegion 0 0.00 0.00 0.00 1.36 2.68 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 I5 Intron 0 0.38 19.49 6.13 20.57 18.73 67.28 39.34 11.45 7.99 9.94 0.00 0.00 0.00 0.00 0.00 0.08 0.00 2.81 1.65 6.60 0.00 0.00 0.00 56 I5_SR1 SilentIntronRegion 0 0.95 20.42 8.55 16.73 9.29 58.60 28.38 5.82 6.92 10.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.32 1.43 8.73 0.00 0.00 0.00 57 I5_AR1 ActiveIntronRegion 0 0.17 26.75 6.72 26.72 23.91 70.31 45.35 16.91 9.53 13.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.83 2.09 8.59 0.00 0.00 0.00 58 I5_SR2 SilentIntronRegion 0 0.40 26.54 3.91 16.13 14.50 56.05 33.10 9.23 11.22 10.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 1.21 5.85 0.00 0.00 0.00 59 I5_AR2 ActiveIntronRegion 0 0.37 7.23 4.90 16.22 16.10 68.32 34.96 9.84 4.33 6.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 2.21 3.87 0.00 0.00 0.00 60 I5_AR3 ActiveIntronRegion 0 0.00 5.34 1.23 11.24 34.78 35.99 33.26 3.46 5.09 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 1.06 0.00 0.00 0.00 61 I5_AR4 ActiveIntronRegion 0 0.00 10.76 4.39 19.02 43.70 68.31 47.99 7.27 6.18 5.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.62 0.00 5.94 0.00 0.00 0.00 62 I5_SR3 SilentIntronRegion 0 0.11 26.41 10.28 31.69 20.32 106.36 58.25 13.85 12.20 10.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.22 0.00 6.19 0.00 0.00 0.00 63 I5_AR5 ActiveIntronRegion 0 0.97 21.33 6.15 16.48 25.70 47.45 45.35 4.74 9.39 7.47 0.00 0.00 0.00 0.00 0.00 1.58 0.00 3.23 0.00 9.24 0.00 0.00 0.00 64 E6_Aa NovelBoundary 0 0.00 27.43 15.61 46.98 20.03 136.74 71.72 11.50 10.91 11.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.21 0.00 3.13 0.00 0.00 0.00 65 ER6a ExonRegion 0 2.05 47.99 20.82 51.35 51.53 245.27 101.35 32.68 31.96 30.17 0.00 0.00 0.00 0.00 0.00 0.54 0.00 4.80 4.00 20.87 0.00 0.00 0.00 66 E6_Da KnownBoundary 0 5.93 25.65 10.20 55.37 60.61 272.23 125.42 23.91 21.93 40.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 12.08 0.00 0.00 0.00 67 ER6b ExonRegion 0 2.54 23.15 9.03 57.12 56.42 254.90 87.85 30.69 30.07 32.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.36 18.48 0.00 0.00 0.00 68 E6_Db KnownBoundary 0 0.00 6.64 4.44 25.34 21.90 215.90 48.53 24.19 17.59 13.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.74 0.00 0.00 0.00 69 E6_Dc KnownBoundary 0 0.00 8.75 3.67 22.44 38.03 107.84 30.91 16.63 11.98 22.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.94 0.00 0.00 0.00 70 ER6c ExonRegion 0 0.00 19.12 11.03 58.60 59.94 262.23 71.49 39.75 34.83 35.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.23 0.00 0.00 0.00 71 ER6d ExonRegion 0 2.24 52.10 18.54 92.80 60.69 249.19 79.63 33.67 36.39 33.42 0.00 0.00 0.00 0.00 0.08 0.00 0.00 2.67 2.71 15.48 0.00 0.00 0.00 72 ER6e ExonRegion 0 0.00 3.05 1.23 1.36 0.00 6.11 0.66 3.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00