Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CDCA7L Gene 0 61.66 36.30 6.22 15.99 23.69 9.91 5.14 5.38 1.93 16.34 133.70 125.71 151.55 85.93 84.01 42.53 91.80 11.63 13.80 18.58 35.35 30.15 19.05 2 406877 Transcript 0 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 2.23 0.00 0.00 0.00 0.59 0.35 0.00 0.00 0.00 0.69 0.00 0.00 0.00 3 373934 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 457951 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 396561 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 447180 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 356195 Transcript 0 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.66 4.69 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 435031 Transcript 0 0.55 0.26 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.22 0.00 0.46 1.71 0.18 1.06 0.77 0.43 0.00 0.00 0.83 0.00 0.00 0.04 9 405437 Transcript 0 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 465490 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 488845 Transcript 0 6.59 2.47 0.17 1.54 0.30 0.26 1.86 0.13 0.05 0.35 8.73 4.49 8.43 8.00 2.72 3.54 5.52 0.49 0.36 0.43 2.37 5.09 0.52 12 489669 Transcript 0 7.13 2.36 0.54 0.89 0.84 0.80 0.77 0.98 0.96 1.00 7.35 7.22 8.42 4.58 5.04 2.16 14.87 1.27 0.00 4.33 1.60 4.54 2.13 13 435717 Transcript 0 16.31 4.59 1.75 4.05 6.27 2.69 1.65 0.81 0.58 0.27 11.94 7.96 7.18 5.71 7.76 4.03 15.83 1.16 3.51 6.97 4.26 4.80 7.40 14 IG33_SR6 SilentIntergenicRegion 0 2.93 0.56 2.37 2.67 8.59 0.25 2.48 6.07 14.48 3.68 0.00 0.12 1.63 0.54 1.78 0.00 3.38 0.33 0.43 1.63 0.00 0.71 0.60 15 IG33_AR5 ActiveIntergenicRegion 0 5.50 0.52 6.49 4.84 20.13 2.67 3.17 10.96 24.69 9.73 0.00 0.61 3.40 0.79 4.79 0.00 5.19 1.36 1.64 2.60 0.38 0.71 0.50 16 IG33_SR5 SilentIntergenicRegion 0 2.26 1.27 5.91 4.70 16.21 0.38 3.06 9.74 20.73 3.91 0.00 1.71 3.52 0.28 0.65 0.00 4.89 0.14 0.00 1.82 0.00 1.17 0.72 17 IG33_AR4 ActiveIntergenicRegion 0 4.37 1.86 7.68 2.25 25.27 3.19 4.73 15.84 28.69 8.69 0.00 0.55 1.09 1.19 2.53 0.00 3.79 0.00 0.58 0.91 0.00 1.01 0.22 18 IG33_SR4 SilentIntergenicRegion 0 2.55 1.01 6.09 3.02 12.91 0.78 4.97 13.17 23.63 6.66 0.00 1.06 3.01 0.99 3.11 0.00 3.74 1.63 2.93 2.26 0.00 1.92 1.25 19 IG33_AR3 ActiveIntergenicRegion 0 1.26 0.15 4.73 3.31 10.45 1.09 1.47 9.69 15.08 5.13 0.00 0.26 0.62 1.08 1.64 0.00 3.07 0.00 0.46 1.42 0.00 1.25 0.10 20 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 2.23 0.00 0.00 0.00 0.59 0.35 0.00 0.00 0.00 0.69 0.00 0.00 0.00 21 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E1_Ad KnownBoundary 0 0.00 3.03 0.00 0.00 4.07 0.00 4.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.05 3.20 0.00 0.00 0.00 24 ER1b ExonRegion 0 1.21 2.32 0.00 0.00 4.46 0.00 2.14 0.00 0.00 0.00 5.80 0.00 0.00 1.08 0.41 4.67 0.00 0.00 1.37 3.75 1.36 0.00 0.00 25 E1_Ae KnownBoundary 0 37.49 26.64 0.00 6.03 29.46 2.78 1.90 1.64 0.00 2.31 34.75 0.00 6.33 84.82 59.34 39.90 69.94 8.66 11.01 16.04 28.97 17.51 13.32 26 ER1c ExonRegion 0 4.23 4.07 0.00 0.00 6.69 0.00 2.65 0.00 0.00 0.00 5.80 0.00 0.00 4.87 0.00 9.66 3.30 0.00 3.19 4.26 6.06 0.00 0.00 27 ER1d ExonRegion 0 20.46 14.62 0.41 1.49 20.00 2.71 3.47 0.82 0.00 1.42 23.56 0.00 0.00 37.05 24.87 23.21 38.67 7.22 7.28 11.55 16.06 10.42 6.15 28 ER1e ExonRegion 1 74.95 59.29 3.75 5.00 35.64 17.73 4.24 3.78 0.00 14.72 136.20 14.86 38.15 74.34 70.35 65.48 126.52 26.23 18.78 33.43 62.11 29.79 33.18 29 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.70 0.00 2.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E1a_E4c KnownJunction 0 8.96 0.00 0.00 3.03 16.38 0.00 0.00 7.15 0.00 8.76 22.69 31.06 44.96 27.43 22.25 19.40 36.93 3.86 13.74 0.00 24.28 14.82 11.95 31 E1a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER2a ExonRegion 0 1.10 0.53 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.44 0.01 0.92 3.43 0.35 2.12 1.54 0.85 0.00 0.00 1.65 0.00 0.00 0.07 33 E2a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.36 2.33 0.17 1.56 0.00 0.00 0.86 0.00 0.00 1.22 0.04 0.00 0.00 35 E3a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.69 0.00 0.00 2.41 0.00 0.00 4.21 0.00 0.00 3.26 0.00 0.00 0.00 36 ER4a ExonRegion 0 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER4b ExonRegion 0 3.53 0.00 0.00 0.91 7.14 0.00 0.00 1.73 0.00 4.59 14.82 7.22 21.89 11.37 5.80 7.93 15.40 1.23 3.19 0.71 11.02 4.17 4.89 38 ER4c ExonRegion 0 12.71 6.10 4.63 10.74 9.42 4.27 2.86 7.67 0.01 22.41 211.24 72.12 77.89 113.89 83.49 71.90 164.24 23.14 17.68 31.79 89.12 37.64 36.37 39 E4a_E5a KnownJunction 0 9.48 12.04 7.39 13.25 16.30 13.63 4.33 2.42 0.00 19.99 86.76 30.46 69.48 60.92 93.83 79.98 59.00 21.97 27.77 11.25 28.17 13.59 75.29 40 E4a_E5b KnownJunction 0 9.04 8.49 0.00 6.39 3.65 9.37 1.85 4.52 0.00 10.61 52.59 53.72 18.83 48.97 37.21 46.23 30.29 13.80 8.47 7.99 14.15 24.80 15.96 41 E4a_E6a KnownJunction 0 3.11 0.00 0.00 0.00 4.33 0.00 0.00 1.89 0.00 6.53 31.48 17.86 19.80 35.73 4.45 52.72 20.48 4.93 0.00 5.18 5.68 12.74 12.21 42 ER5a ExonRegion 0 18.52 20.34 7.35 11.93 12.71 18.34 2.98 4.32 0.31 22.08 126.12 41.13 102.01 76.33 94.29 77.28 62.72 28.18 36.63 14.36 27.00 19.27 67.54 43 ER5b ExonRegion 0 27.75 52.99 6.47 22.28 56.61 23.77 6.47 5.46 1.82 27.93 214.81 145.55 171.89 126.34 81.82 64.26 140.12 23.48 29.52 25.39 51.43 38.62 30.68 44 E5a_E6a KnownJunction 0 40.16 98.80 6.92 29.53 22.16 2.84 0.00 7.35 2.92 32.37 240.17 234.68 268.33 157.63 125.72 64.26 182.14 14.92 7.91 24.67 55.72 53.95 55.83 45 ER6a ExonRegion 0 75.27 88.80 11.11 35.48 33.65 9.27 4.67 11.03 4.03 35.90 335.99 272.61 286.95 192.43 115.52 79.39 228.48 18.14 38.59 33.60 93.90 56.06 41.48 46 E6_Da KnownBoundary 0 120.98 91.37 9.25 42.62 29.80 14.08 8.35 17.74 1.68 35.30 357.20 343.76 452.08 227.27 134.50 68.36 234.41 19.61 50.17 45.38 86.55 79.54 38.33 47 ER6b ExonRegion 0 68.83 43.68 8.60 36.92 27.80 12.56 4.63 17.86 2.81 35.77 301.42 359.59 333.51 197.09 123.30 95.27 177.88 21.97 34.98 38.34 96.27 78.98 35.08 48 E6_Db KnownBoundary 0 84.83 29.01 7.39 42.55 27.33 23.62 10.11 16.18 5.12 32.69 304.60 401.08 283.10 193.95 104.09 101.08 185.88 19.32 17.69 24.29 99.65 77.28 46.44 49 ER6c ExonRegion 0 76.67 61.69 13.28 41.60 34.08 22.24 6.71 12.83 7.41 43.67 398.40 456.92 393.54 239.12 157.96 131.27 254.03 23.59 31.34 47.05 94.60 83.08 57.49 50 E6_Dc KnownBoundary 0 71.12 82.22 11.47 32.86 57.98 32.20 12.63 18.20 8.85 45.13 330.24 516.02 338.45 186.47 193.96 131.42 223.66 18.70 56.19 40.14 80.00 64.48 63.08 51 ER6d ExonRegion 0 42.00 70.75 10.22 29.56 52.35 13.28 10.22 15.24 5.57 35.23 340.90 380.93 276.51 211.09 136.15 103.82 247.99 25.76 22.43 36.44 85.98 67.44 39.62 52 E6d_E7a KnownJunction 1 51.71 70.84 5.23 31.26 60.02 13.00 10.16 8.21 2.98 34.41 369.94 445.35 181.16 221.38 123.74 68.44 305.28 27.19 13.27 31.26 109.84 64.97 34.66 53 ER7a ExonRegion 0 42.98 53.35 9.31 28.26 33.52 15.89 5.79 8.04 5.35 31.16 319.33 356.28 271.50 214.59 152.15 98.86 215.43 33.05 28.09 39.69 90.11 39.99 38.34 54 E7a_E8a KnownJunction 0 50.08 46.83 13.25 32.53 30.39 5.79 0.00 13.27 9.23 23.29 246.38 342.41 301.93 219.97 196.92 69.13 193.45 44.11 43.86 34.20 84.82 39.99 41.83 55 ER8a ExonRegion 0 49.39 39.32 9.21 28.77 13.18 7.06 2.94 13.25 6.68 26.17 215.55 303.86 318.05 209.21 153.55 75.40 185.34 35.59 48.61 38.30 95.90 50.78 33.17 56 ER8b ExonRegion 0 50.37 43.52 10.29 21.81 8.56 5.50 5.30 13.14 2.96 28.67 208.37 298.73 317.05 210.16 161.31 98.67 182.21 31.78 51.60 38.30 99.61 49.59 38.18 57 ER8c ExonRegion 0 58.53 48.89 8.63 22.81 14.43 10.92 7.66 11.05 1.66 30.27 216.65 291.58 273.25 203.01 161.97 91.23 173.51 30.45 50.13 34.32 92.36 54.44 39.96 58 ER8d ExonRegion 0 59.04 39.32 6.89 25.86 22.54 13.71 7.64 4.56 3.85 29.71 205.40 222.64 183.53 193.85 129.35 78.54 168.70 30.41 18.80 23.22 77.58 46.78 46.73 59 E8c_E9b KnownJunction 0 113.43 38.61 6.59 34.63 36.59 22.15 19.52 12.73 3.85 29.82 262.17 203.62 261.18 201.07 225.35 114.16 194.95 37.72 30.87 34.64 74.32 40.17 43.28 60 ER9a ExonRegion 0 6.59 2.47 0.17 1.54 0.30 0.26 1.86 0.13 0.05 0.35 8.73 4.49 8.43 8.00 2.72 3.54 5.52 0.49 0.36 0.43 2.37 5.09 0.52 61 E9_Ab KnownBoundary 0 14.60 3.35 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 11.85 0.00 6.01 4.59 0.00 0.00 4.68 0.00 0.00 0.00 0.00 3.12 0.00 62 ER9b ExonRegion 0 77.48 43.50 13.54 34.22 21.74 18.01 9.34 12.10 3.71 27.77 233.02 118.83 152.93 210.67 167.55 113.79 203.06 28.94 36.06 37.61 70.05 49.71 31.36 63 E9_Ac KnownBoundary 1 105.65 77.62 14.84 34.96 31.41 15.84 8.04 9.45 2.23 31.64 244.27 68.57 140.09 231.56 144.88 61.78 177.47 17.16 16.47 24.42 90.32 57.68 22.88 64 ER9c ExonRegion 0 106.87 61.60 9.93 39.90 44.56 25.22 7.56 6.76 1.25 29.30 291.17 136.54 169.05 220.22 161.76 97.65 167.63 20.11 24.47 36.26 94.34 41.52 55.88 65 E9a_E10a KnownJunction 0 153.66 74.00 9.79 43.42 47.71 19.48 6.76 7.68 3.15 32.26 284.02 114.94 133.27 230.27 252.92 116.38 120.99 23.92 21.55 49.28 80.62 40.97 67.78 66 ER10a ExonRegion 0 57.42 62.43 9.70 30.52 26.37 14.14 5.49 13.10 4.57 27.64 239.87 95.25 133.24 181.09 220.18 93.22 179.15 31.23 26.32 37.95 84.80 40.93 36.73 67 E10_Da KnownBoundary 0 45.27 67.62 15.29 38.39 10.95 5.56 2.25 9.90 4.40 21.06 233.27 112.99 171.09 190.07 176.77 73.48 143.90 25.04 4.14 53.37 68.94 25.90 35.25 68 ER10b ExonRegion 0 48.20 49.72 11.79 37.00 21.07 6.10 10.62 5.83 3.92 21.68 223.35 109.86 138.12 186.25 182.05 80.10 123.87 24.71 11.07 38.24 69.36 25.63 37.00 69 E10_Db KnownBoundary 0 7.56 0.00 0.00 0.00 3.31 0.00 0.00 2.51 1.77 0.00 2.11 0.00 0.00 10.07 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.18 70 E10b_E11a KnownJunction 0 64.16 54.79 13.84 37.62 32.26 8.52 14.09 7.97 3.53 27.48 229.43 111.94 143.01 223.91 201.74 93.48 118.00 23.01 20.89 33.11 66.23 29.09 24.67 71 ER10c ExonRegion 0 7.13 2.36 0.54 0.89 0.84 0.80 0.77 0.98 0.96 1.00 7.35 7.22 8.42 4.58 5.04 2.16 14.87 1.27 0.00 4.33 1.60 4.54 2.13 72 I10 Intron 0 10.13 4.68 1.01 1.50 2.46 0.17 0.37 1.42 0.51 0.63 6.76 4.64 7.85 3.76 5.31 2.46 4.25 2.88 1.17 2.94 7.91 2.88 2.70 73 I10_SR1 SilentIntronRegion 0 10.16 4.70 1.01 1.50 2.47 0.17 0.37 1.43 0.51 0.63 6.79 4.66 7.88 3.77 5.33 2.47 4.27 2.89 1.18 2.95 7.94 2.89 2.71 74 E11_Aa NovelBoundary 0 15.78 16.44 0.00 1.43 12.48 6.81 2.25 0.00 1.68 1.42 18.00 6.30 8.28 7.06 14.71 3.93 18.05 0.00 4.71 2.62 13.16 13.53 10.93 75 ER11a ExonRegion 0 83.12 66.71 11.23 29.50 40.00 26.76 10.87 9.85 3.24 28.48 234.47 101.22 139.26 177.36 219.25 82.74 166.49 21.44 20.04 40.97 74.15 46.63 30.91 76 E11_Da KnownBoundary 0 17.71 8.35 0.00 5.49 0.00 4.32 6.23 0.00 0.00 0.00 12.85 0.00 0.00 10.07 14.09 4.36 8.32 0.00 0.00 2.88 8.65 3.12 0.00 77 E11a_E12a KnownJunction 0 199.15 60.38 11.06 43.22 57.56 37.02 13.87 15.36 2.31 35.83 256.06 125.89 221.74 176.64 161.32 39.90 127.63 14.30 17.79 26.33 53.31 35.33 15.62 78 ER11b ExonRegion 0 16.31 4.59 1.75 4.05 6.27 2.69 1.65 0.81 0.58 0.27 11.94 7.96 7.18 5.71 7.76 4.03 15.83 1.16 3.51 6.97 4.26 4.80 7.40 79 E11_Db NovelBoundary 0 31.86 8.68 1.83 7.19 4.33 2.27 0.00 0.00 0.00 4.27 7.21 17.26 6.66 9.95 5.19 0.00 12.34 2.20 0.00 2.88 5.62 9.37 3.33 80 I11 Intron 0 18.30 3.10 1.24 4.13 6.80 0.93 1.12 3.49 0.31 1.17 10.81 17.65 8.69 2.98 6.54 1.01 8.95 1.41 0.54 7.23 4.11 6.35 0.50 81 I11_SR1 SilentIntronRegion 0 18.48 3.13 1.25 4.17 6.85 0.94 1.13 3.53 0.32 1.18 10.91 17.83 8.78 3.01 6.60 1.02 9.04 1.42 0.55 7.30 4.15 6.42 0.50 82 E12_Aa NovelBoundary 0 31.86 18.35 3.25 2.06 0.00 2.67 0.00 6.04 0.00 1.67 18.74 26.56 6.82 5.36 25.59 3.93 4.77 0.00 0.00 8.63 0.00 2.76 0.00 83 ER12a ExonRegion 0 110.68 49.02 8.23 17.01 33.46 11.23 7.36 5.60 1.75 16.94 118.94 151.42 228.55 66.82 96.26 31.53 72.78 7.61 12.45 14.78 19.54 34.43 12.90 84 ER12b ExonRegion 0 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.66 18.76 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85 ER12c ExonRegion 0 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.66 4.69 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00