Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C7orf30 Gene 0 21.11 22.24 36.44 28.67 30.55 25.04 22.84 26.61 15.33 24.74 38.42 26.53 24.25 36.39 56.22 26.33 34.27 12.72 14.30 18.79 26.69 32.37 19.49 2 479974 Transcript 0 0.00 0.00 0.00 0.00 0.03 0.23 0.00 0.00 0.00 0.00 0.24 2.75 0.00 0.17 0.01 0.00 0.01 0.00 0.21 0.00 0.27 0.00 0.00 3 466681 Transcript 0 4.37 4.95 4.47 2.83 5.18 4.65 6.05 4.48 1.09 3.72 3.10 4.54 3.07 3.02 4.63 1.78 2.99 1.53 1.63 3.93 2.59 1.92 1.74 4 287543 Transcript 0 14.09 22.52 6.22 13.06 31.46 5.10 18.12 7.55 3.65 9.34 16.45 8.76 1.14 6.22 4.74 4.06 23.11 1.62 0.00 7.68 8.17 4.37 4.30 5 481564 Transcript 0 6.06 10.42 11.53 24.03 26.46 11.56 22.06 20.48 17.33 12.65 11.54 26.66 23.13 19.77 7.32 23.19 12.05 10.37 13.28 14.69 10.52 9.24 14.70 6 476623 Transcript 0 53.59 59.08 15.81 40.12 51.41 29.27 38.58 24.85 8.45 15.18 10.84 14.28 16.42 17.41 17.80 24.08 18.23 7.85 10.97 13.50 12.36 15.57 18.35 7 IG50_SR1 SilentIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.19 7.09 15.87 8 ER1a ExonRegion 0 0.00 0.00 0.01 0.00 0.05 0.47 0.01 0.00 0.00 0.00 0.48 5.50 0.00 0.33 0.01 0.00 0.02 0.00 0.41 0.01 0.55 0.01 0.00 9 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 0 5.55 2.19 1.04 0.27 2.29 2.36 2.87 0.06 0.22 0.72 4.02 1.30 0.00 2.87 6.07 1.42 1.16 0.78 1.21 2.08 2.61 0.73 2.18 11 E2_Ab KnownBoundary 0 11.19 3.35 0.00 0.00 4.16 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 4.10 0.00 0.00 0.00 0.00 2.90 2.88 4.35 12 E2_Ac KnownBoundary 0 62.31 32.23 20.55 5.39 23.85 32.08 44.03 1.60 6.13 11.50 24.01 0.00 0.00 11.12 41.66 0.00 19.35 19.23 0.00 16.30 25.45 0.00 21.68 13 ER2b ExonRegion 1 63.50 32.54 20.83 4.09 48.16 64.18 48.99 1.73 2.47 9.18 36.73 0.00 0.00 42.23 101.54 8.92 23.11 9.24 3.19 19.15 39.67 4.17 29.37 14 ER2c ExonRegion 1 47.65 38.73 68.65 30.14 28.49 50.96 37.08 21.87 20.45 45.64 85.00 12.06 17.69 91.84 174.82 96.02 78.57 51.86 35.33 36.86 107.49 63.11 97.26 15 E2a_E3a KnownJunction 1 22.97 98.47 191.00 101.95 100.68 59.68 62.53 92.54 74.28 123.78 183.26 32.11 46.75 131.09 250.08 238.14 176.34 139.24 90.36 74.53 210.23 208.32 182.25 16 E3_Aa NovelBoundary 0 10.67 5.92 14.43 1.33 16.38 15.33 30.56 7.23 0.00 2.87 2.68 0.00 6.33 2.47 0.00 11.36 8.42 4.39 0.00 6.52 2.84 10.72 0.00 17 ER3a ExonRegion 0 59.83 67.18 188.98 98.08 254.10 195.36 130.72 109.17 78.46 121.23 266.81 96.05 95.82 194.12 278.12 141.66 198.67 87.34 75.30 84.09 152.31 177.41 85.37 18 E3_Da KnownBoundary 0 91.35 103.27 251.23 141.11 355.69 243.78 179.83 137.72 109.37 148.28 280.07 130.24 244.14 249.99 302.00 144.24 233.19 84.03 97.89 129.75 150.61 171.21 80.92 19 ER3b ExonRegion 0 90.28 132.90 309.00 203.16 130.80 184.48 116.21 157.21 123.22 172.64 367.56 223.97 207.92 355.07 512.12 211.21 321.32 84.38 120.60 141.89 233.74 265.79 149.39 20 E3_Db KnownBoundary 0 0.00 0.00 14.46 28.57 4.33 0.00 4.33 11.05 18.08 18.21 7.21 18.01 19.32 19.60 15.20 15.38 20.76 9.58 8.00 6.01 8.90 20.45 31.76 21 E3b_E4b KnownJunction 0 173.81 93.27 309.16 206.17 75.04 116.98 55.51 174.61 113.25 162.38 382.25 227.02 170.61 326.86 551.58 206.27 359.61 74.08 133.56 168.87 216.84 328.09 136.32 22 E3b_E5a NovelJunction 0 0.00 0.00 29.63 0.00 0.00 0.00 0.00 1.93 4.08 1.45 0.00 6.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER3c ExonRegion 1 6.06 10.42 11.53 24.03 26.46 11.56 22.06 20.48 17.33 12.65 11.54 26.66 23.13 19.77 7.32 23.19 12.05 10.37 13.28 14.69 10.52 9.24 14.70 24 E3_Dc NovelBoundary 0 6.37 8.95 0.00 9.02 23.43 11.53 9.41 7.06 9.84 9.11 7.05 0.00 0.00 9.95 0.00 6.92 3.74 6.80 3.86 15.72 3.15 0.00 7.00 25 I3 Intron 0 25.41 28.45 17.30 26.80 34.78 19.74 29.16 12.65 12.14 15.86 11.32 19.82 17.62 14.40 7.10 12.24 12.12 6.47 9.32 15.52 8.53 12.09 10.64 26 I3_SR1 SilentIntronRegion 0 11.11 10.03 13.66 15.67 21.50 10.51 22.02 6.97 7.61 8.97 8.92 18.32 14.40 13.23 4.21 7.09 10.77 3.29 7.35 14.39 4.91 10.94 7.24 27 I3_AR1 ActiveIntronRegion 0 49.34 59.26 23.45 45.47 57.05 35.22 41.21 22.18 19.75 27.39 15.36 22.40 23.07 16.44 11.94 20.87 14.43 11.81 12.66 17.47 14.60 14.08 16.34 28 E4_Aa NovelBoundary 0 132.62 103.67 30.84 90.33 147.62 93.13 104.67 48.18 30.64 37.26 37.64 12.90 32.14 21.66 13.35 74.42 43.67 17.49 11.29 23.39 27.68 32.21 35.43 29 ER4a ExonRegion 0 53.59 59.08 15.81 40.12 51.41 29.27 38.58 24.85 8.45 15.18 10.84 14.28 16.42 17.41 17.80 24.08 18.23 7.85 10.97 13.50 12.36 15.57 18.35 30 E4_Ab KnownBoundary 0 90.24 77.95 25.25 97.12 64.01 24.99 37.14 40.50 20.25 19.31 17.00 31.51 39.12 13.89 8.90 19.05 27.02 10.61 27.95 14.76 14.27 19.96 17.24 31 ER4b ExonRegion 0 136.01 107.25 253.17 235.73 122.39 102.51 78.51 179.20 111.18 168.65 322.17 168.53 175.79 227.64 387.73 138.52 231.31 62.98 78.61 103.81 154.31 244.75 79.91 32 E4_Da KnownBoundary 0 44.01 64.66 29.12 57.60 78.95 13.46 45.75 35.36 10.59 25.95 38.38 25.21 0.00 4.77 9.52 11.19 56.85 7.13 3.67 22.12 19.52 11.14 8.11 33 E4a_E5a KnownJunction 0 88.02 43.08 240.77 223.41 44.06 52.58 34.01 149.22 106.16 146.69 196.89 133.99 99.18 163.64 368.13 150.05 107.71 29.35 21.18 113.13 94.03 214.26 74.18 34 ER4c ExonRegion 0 14.09 22.52 6.22 13.06 31.46 5.10 18.12 7.55 3.65 9.34 16.45 8.76 1.14 6.22 4.74 4.06 23.11 1.62 0.00 7.68 8.17 4.37 4.30 35 E4_Db NovelBoundary 1 58.83 56.24 38.29 82.67 53.57 50.71 37.05 35.24 13.74 24.04 2.11 25.06 12.99 12.01 4.45 19.91 36.93 6.88 24.85 17.71 11.74 25.84 7.77 36 I4 Intron 0 36.11 29.05 21.61 42.77 44.25 28.73 38.14 22.64 12.81 21.57 12.62 16.11 16.45 8.08 8.67 10.09 18.67 5.28 8.87 14.44 7.28 8.52 5.89 37 I4_AR1 ActiveIntronRegion 0 36.23 29.14 21.68 42.91 44.39 28.82 38.27 22.72 12.86 21.64 12.66 16.17 16.50 8.11 8.70 10.12 18.74 5.30 8.90 14.49 7.30 8.55 5.91 38 E5_Aa NovelBoundary 0 66.83 52.95 47.43 109.08 59.00 40.94 43.99 121.37 34.26 62.48 29.06 49.07 6.17 18.19 17.80 11.54 17.86 7.63 13.08 61.17 8.59 30.13 15.19 39 ER5a ExonRegion 0 113.82 82.91 155.42 146.97 150.61 79.45 80.62 138.90 79.05 104.58 144.77 133.47 120.73 150.70 246.71 87.76 128.81 28.67 56.87 70.84 73.44 166.35 55.29 40 E5_Da KnownBoundary 0 13.48 40.85 51.45 21.64 69.27 35.55 71.28 59.35 13.17 23.56 12.21 30.76 6.98 25.84 10.14 4.02 37.03 7.88 3.76 30.04 17.98 27.80 4.35 41 ER5b ExonRegion 0 3.19 7.70 7.90 5.39 8.07 6.94 9.23 8.89 1.95 6.72 2.18 7.78 6.13 3.17 3.19 2.14 4.82 2.29 2.05 5.78 2.56 3.10 1.29